RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 C9orf118A6NHY6 69 aa13.36□□□□□ -0.27
TRIM47-204ENST00000587339 APOMO95445 188 aa13.36□□□□□ -0.27
TRIM47-204ENST00000587339 NPC2P61916 151 aa13.35□□□□□ -0.27
TRIM47-204ENST00000587339 UBE2V1Q13404 147 aa13.35□□□□□ -0.27
TRIM47-204ENST00000587339 CKS1BP61024 79 aa13.35□□□□□ -0.27
TRIM47-204ENST00000587339 H3BUT2 72 aa13.34□□□□□ -0.27
TRIM47-204ENST00000587339 IFITM1P13164 125 aa13.34□□□□□ -0.27
TRIM47-204ENST00000587339 KIAA0087Q14695 138 aa13.34□□□□□ -0.27
TRIM47-204ENST00000587339 CFAP161Q6P656 301 aa13.34□□□□□ -0.27
TRIM47-204ENST00000587339 UPK3BQ9BT76 320 aa13.34□□□□□ -0.27
TRIM47-204ENST00000587339 CFC1BP0CG36 223 aa13.33□□□□□ -0.28
TRIM47-204ENST00000587339 CFC1P0CG37 223 aa13.33□□□□□ -0.28
TRIM47-204ENST00000587339 NAA38Q9BRA0 125 aaKnown RBP13.33□□□□□ -0.28
TRIM47-204ENST00000587339 KLK5Q9Y337 293 aaPredicted RBP13.33□□□□□ -0.28
TRIM47-204ENST00000587339 C2orf82Q6UX34 121 aa13.33□□□□□ -0.28
TRIM47-204ENST00000587339 C1orf43Q9BWL3 253 aa13.33□□□□□ -0.28
TRIM47-204ENST00000587339 CXCL5P42830 114 aa13.32□□□□□ -0.28
TRIM47-204ENST00000587339 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.31□□□□□ -0.28
TRIM47-204ENST00000587339 IBA57-AS1B1ANH7 110 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 VAMP3Q15836 100 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 LINC00308Q8TCZ7 52 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 PRKDCP78527 4128 aaKnown RBP13.31□□□□□ -0.28
TRIM47-204ENST00000587339 KRTAP26-1Q6PEX3 210 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 COPS9Q8WXC6 57 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 APLNQ9ULZ1 77 aa13.31□□□□□ -0.28
TRIM47-204ENST00000587339 NUPR2A6NF83 97 aa13.3□□□□□ -0.28
TRIM47-204ENST00000587339 SPAG11BQ08648 103 aa13.3□□□□□ -0.28
TRIM47-204ENST00000587339 IGKV2D-24A0A075B6R9 120 aa13.29□□□□□ -0.28
TRIM47-204ENST00000587339 EIF4EBP3O60516 100 aaPredicted RBP13.29□□□□□ -0.28
TRIM47-204ENST00000587339 LINC00158P58513 81 aa13.29□□□□□ -0.28
TRIM47-204ENST00000587339 ERG28Q9UKR5 140 aa13.29□□□□□ -0.28
TRIM47-204ENST00000587339 Q9HAA7 133 aa13.29□□□□□ -0.28
TRIM47-204ENST00000587339 PFN2P35080 140 aa13.28□□□□□ -0.28
TRIM47-204ENST00000587339 MIR7-3HGQ8N6C7 128 aa13.28□□□□□ -0.28
TRIM47-204ENST00000587339 PGPEP1Q9NXJ5 209 aa13.28□□□□□ -0.28
TRIM47-204ENST00000587339 A0A0B4J2C4 111 aa13.27□□□□□ -0.28
TRIM47-204ENST00000587339 PRO1854Q9UHT4 67 aa13.27□□□□□ -0.28
TRIM47-204ENST00000587339 A0A1W2PPM0 123 aa13.27□□□□□ -0.29
TRIM47-204ENST00000587339 SOSTDC1Q6X4U4 206 aa13.26□□□□□ -0.29
TRIM47-204ENST00000587339 UBE2DNLQ8IWF7 75 aa13.25□□□□□ -0.29
TRIM47-204ENST00000587339 C6orf223Q8N319 242 aa13.25□□□□□ -0.29
TRIM47-204ENST00000587339 LINC00526Q96FQ7 95 aa13.25□□□□□ -0.29
TRIM47-204ENST00000587339 FABP2P12104 132 aa13.24□□□□□ -0.29
TRIM47-204ENST00000587339 TSPAN13O95857 204 aa13.23□□□□□ -0.29
TRIM47-204ENST00000587339 PPDPFQ9H3Y8 114 aa13.23□□□□□ -0.29
TRIM47-204ENST00000587339 ZNF561-AS1K7EIQ3 104 aa13.22□□□□□ -0.29
TRIM47-204ENST00000587339 COX17Q14061 63 aa13.22□□□□□ -0.29
TRIM47-204ENST00000587339 UNQ6190/PRO20217Q6UXQ8 127 aa13.21□□□□□ -0.29
TRIM47-204ENST00000587339 NTN5Q8WTR8 489 aaPredicted RBP13.21□□□□□ -0.29
TRIM47-204ENST00000587339 HIGD2BQ4VC39 106 aa13.21□□□□□ -0.3
TRIM47-204ENST00000587339 GAGE10A6NGK3 116 aa13.2□□□□□ -0.3
TRIM47-204ENST00000587339 C10orf25Q5T742 122 aa13.2□□□□□ -0.3
TRIM47-204ENST00000587339 C15orf56Q8N910 161 aa13.2□□□□□ -0.3
TRIM47-204ENST00000587339 C9orf116Q5BN46 136 aaPredicted RBP13.19□□□□□ -0.3
TRIM47-204ENST00000587339 RMI2Q96E14 147 aa13.19□□□□□ -0.3
TRIM47-204ENST00000587339 SPCS1Q9Y6A9 102 aa13.19□□□□□ -0.3
TRIM47-204ENST00000587339 CSMD3Q7Z407 3707 aa13.19□□□□□ -0.3
TRIM47-204ENST00000587339 H7C2G1 150 aa13.19□□□□□ -0.3
TRIM47-204ENST00000587339 GTF2H5Q6ZYL4 71 aa13.18□□□□□ -0.3
TRIM47-204ENST00000587339 SND1-IT1Q9HBX3 110 aa13.17□□□□□ -0.3
TRIM47-204ENST00000587339 K7EP34 96 aa13.17□□□□□ -0.3
TRIM47-204ENST00000587339 Q1RN00 199 aa13.16□□□□□ -0.3
TRIM47-204ENST00000587339 CAMK2N2Q96S95 79 aa13.16□□□□□ -0.3
TRIM47-204ENST00000587339 DYNC2H1Q8NCM8 4307 aaKnown RBP13.15□□□□□ -0.3
TRIM47-204ENST00000587339 GVQW2A0A096LPI5 108 aaPredicted RBP13.15□□□□□ -0.3
TRIM47-204ENST00000587339 LOC107984156A0A0G2JMH3 177 aa13.15□□□□□ -0.3
TRIM47-204ENST00000587339 ARL17AQ8IVW1 177 aa13.15□□□□□ -0.3
TRIM47-204ENST00000587339 C2orf48Q96LS8 159 aa13.14□□□□□ -0.31
TRIM47-204ENST00000587339 LYSTQ99698 3801 aa13.14□□□□□ -0.31
TRIM47-204ENST00000587339 FBN3Q75N90 2809 aa13.14□□□□□ -0.31
TRIM47-204ENST00000587339 KRTAP1-5Q9BYS1 174 aa13.13□□□□□ -0.31
TRIM47-204ENST00000587339 C6orf48Q9UBA6 75 aa13.13□□□□□ -0.31
TRIM47-204ENST00000587339 RPL13AP40429 203 aaKnown RBP13.13□□□□□ -0.31
TRIM47-204ENST00000587339 PSMB2P49721 201 aa13.13□□□□□ -0.31
TRIM47-204ENST00000587339 TRBV30A0A0K0K1B3 111 aa13.12□□□□□ -0.31
TRIM47-204ENST00000587339 LYRM7Q5U5X0 104 aa13.12□□□□□ -0.31
TRIM47-204ENST00000587339 MUC7Q8TAX7 377 aa13.12□□□□□ -0.31
TRIM47-204ENST00000587339 RNF151Q2KHN1 245 aa13.11□□□□□ -0.31
TRIM47-204ENST00000587339 OCIAD2Q56VL3 154 aa13.11□□□□□ -0.31
TRIM47-204ENST00000587339 CASC10Q5T4H9 136 aa13.11□□□□□ -0.31
TRIM47-204ENST00000587339 TENM2Q9NT68 2774 aa13.1□□□□□ -0.31
TRIM47-204ENST00000587339 F8WDY8 70 aa13.1□□□□□ -0.31
TRIM47-204ENST00000587339 Q6ZRU5 148 aa13.1□□□□□ -0.31
TRIM47-204ENST00000587339 IGKV2-28A0A075B6P5 120 aa13.09□□□□□ -0.31
TRIM47-204ENST00000587339 IGKV2D-28P01615 120 aa13.09□□□□□ -0.31
TRIM47-204ENST00000587339 SCGB1C2P0DMR2 95 aa13.09□□□□□ -0.31
TRIM47-204ENST00000587339 TRAV13-2A0A0B4J235 113 aa13.09□□□□□ -0.31
TRIM47-204ENST00000587339 USP17L23D6RBM5 183 aa13.09□□□□□ -0.31
TRIM47-204ENST00000587339 DNAH1Q9P2D7 4330 aa13.07□□□□□ -0.32
TRIM47-204ENST00000587339 DNAH7Q8WXX0 4024 aa13.07□□□□□ -0.32
TRIM47-204ENST00000587339 TRIAP1O43715 76 aa13.07□□□□□ -0.32
TRIM47-204ENST00000587339 LINC00337Q8N6G1 96 aa13.07□□□□□ -0.32
TRIM47-204ENST00000587339 PLECQ15149 4684 aaKnown RBP13.07□□□□□ -0.32
TRIM47-204ENST00000587339 SYCNQ0VAF6 134 aa13.06□□□□□ -0.32
TRIM47-204ENST00000587339 TTC32Q5I0X7 151 aa13.06□□□□□ -0.32
TRIM47-204ENST00000587339 VPS25Q9BRG1 176 aa13.06□□□□□ -0.32
TRIM47-204ENST00000587339 H3BMG7 143 aa13.05□□□□□ -0.32
TRIM47-204ENST00000587339 K7ERU9 68 aa13.05□□□□□ -0.32
TRIM47-204ENST00000587339 STARD9Q9P2P6 4700 aa13.05□□□□□ -0.32
TRIM47-204ENST00000587339 TRBV20-1A0A075B6N2 111 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms