RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 FAM19A3Q7Z5A8 133 aa8.3□□□□□ -1.08
CCDC40-216ENST00000576241 PRR26Q8N8Z3 221 aa8.3□□□□□ -1.08
CCDC40-216ENST00000576241 GEMIN7Q9H840 131 aaKnown RBP8.3□□□□□ -1.08
CCDC40-216ENST00000576241 TIMM17AQ99595 171 aa8.29□□□□□ -1.08
CCDC40-216ENST00000576241 TOMM6Q96B49 74 aa8.28□□□□□ -1.08
CCDC40-216ENST00000576241 CDKN2A-AS1Q9UH64 79 aa8.28□□□□□ -1.08
CCDC40-216ENST00000576241 IGLV1-50A0A075B6I6 118 aa8.27□□□□□ -1.09
CCDC40-216ENST00000576241 F8VRH5 84 aa8.27□□□□□ -1.09
CCDC40-216ENST00000576241 CLLU1Q5K131 121 aa8.27□□□□□ -1.09
CCDC40-216ENST00000576241 LINC00469Q8N7U9 141 aa8.27□□□□□ -1.09
CCDC40-216ENST00000576241 KIAA1644Q3SXP7 199 aa8.26□□□□□ -1.09
CCDC40-216ENST00000576241 LBHQ53QV2 105 aaPredicted RBP8.26□□□□□ -1.09
CCDC40-216ENST00000576241 LCE2AQ5TA79 106 aaPredicted RBP8.26□□□□□ -1.09
CCDC40-216ENST00000576241 ERASQ7Z444 233 aa8.26□□□□□ -1.09
CCDC40-216ENST00000576241 SCGB3A1Q96QR1 104 aa8.26□□□□□ -1.09
CCDC40-216ENST00000576241 XAGE1AQ9HD64 81 aa8.26□□□□□ -1.09
CCDC40-216ENST00000576241 TRAV9-1A0A075B6T8 112 aa8.25□□□□□ -1.09
CCDC40-216ENST00000576241 A0A0U1RQV1 116 aa8.25□□□□□ -1.09
CCDC40-216ENST00000576241 CXCL5P42830 114 aa8.25□□□□□ -1.09
CCDC40-216ENST00000576241 LINC01549A6NIU2 74 aa8.24□□□□□ -1.09
CCDC40-216ENST00000576241 KRTAP1-4P0C5Y4 121 aa8.24□□□□□ -1.09
CCDC40-216ENST00000576241 S100PP25815 95 aa8.24□□□□□ -1.09
CCDC40-216ENST00000576241 RPL13AP40429 203 aaKnown RBP8.24□□□□□ -1.09
CCDC40-216ENST00000576241 UQCC3Q6UW78 93 aa8.24□□□□□ -1.09
CCDC40-216ENST00000576241 C22orf24Q9Y442 160 aa8.24□□□□□ -1.09
CCDC40-216ENST00000576241 NUPR1O60356 82 aa8.23□□□□□ -1.09
CCDC40-216ENST00000576241 ADCYAP1P18509 176 aa8.23□□□□□ -1.09
CCDC40-216ENST00000576241 TINCRA0A1B0GVN0 87 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 TMEM218A2RU14 115 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 SMIM1B2RUZ4 78 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 ZNF861PO60384 105 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 GNB1LQ9BYB4 327 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 FSIP2Q5CZC0 6907 aa8.22□□□□□ -1.09
CCDC40-216ENST00000576241 PDZD11Q5EBL8 140 aa8.21□□□□□ -1.1
CCDC40-216ENST00000576241 MRPL55Q7Z7F7 128 aaKnown RBP8.21□□□□□ -1.1
CCDC40-216ENST00000576241 COX7B2Q8TF08 81 aa8.21□□□□□ -1.1
CCDC40-216ENST00000576241 TP73-AS1Q9UF72 201 aa8.21□□□□□ -1.1
CCDC40-216ENST00000576241 CST9LQ9H4G1 147 aa8.2□□□□□ -1.1
CCDC40-216ENST00000576241 CARHSP1Q9Y2V2 147 aaKnown RBP8.2□□□□□ -1.1
CCDC40-216ENST00000576241 IGLV5-45A0A087WSX0 123 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 LINC01546A6NGU7 62 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 RPL28P46779 137 aaKnown RBP8.19□□□□□ -1.1
CCDC40-216ENST00000576241 COX19Q49B96 90 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 FA2HQ7L5A8 372 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 SEC11CQ9BY50 192 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 SMCO4Q9NRQ5 59 aa8.19□□□□□ -1.1
CCDC40-216ENST00000576241 PMVKQ15126 192 aa8.18□□□□□ -1.1
CCDC40-216ENST00000576241 H3BRM9 83 aa8.17□□□□□ -1.1
CCDC40-216ENST00000576241 BCE1O60756 84 aa8.17□□□□□ -1.1
CCDC40-216ENST00000576241 SPINK8P0C7L1 97 aa8.17□□□□□ -1.1
CCDC40-216ENST00000576241 FABP9Q0Z7S8 132 aa8.17□□□□□ -1.1
CCDC40-216ENST00000576241 MRPL18Q9H0U6 180 aaKnown RBP8.17□□□□□ -1.1
CCDC40-216ENST00000576241 ATP5LO75964 103 aa8.16□□□□□ -1.1
CCDC40-216ENST00000576241 RAB5BP61020 215 aa8.16□□□□□ -1.1
CCDC40-216ENST00000576241 GAGE10A6NGK3 116 aa8.15□□□□□ -1.1
CCDC40-216ENST00000576241 RPL37AP8A6NKH3 93 aa8.15□□□□□ -1.1
CCDC40-216ENST00000576241 PRR4Q16378 134 aa8.15□□□□□ -1.1
CCDC40-216ENST00000576241 NKAPP1Q8N9T2 125 aa8.15□□□□□ -1.1
CCDC40-216ENST00000576241 LINC00167Q96N53 147 aa8.15□□□□□ -1.1
CCDC40-216ENST00000576241 COMMD7Q86VX2 200 aa8.14□□□□□ -1.11
CCDC40-216ENST00000576241 CRCT1Q9UGL9 99 aa8.14□□□□□ -1.11
CCDC40-216ENST00000576241 IGLV5-37A0A075B6J1 123 aa8.13□□□□□ -1.11
CCDC40-216ENST00000576241 NDUFA6P56556 154 aa8.13□□□□□ -1.11
CCDC40-216ENST00000576241 IFITM2Q01629 132 aa8.13□□□□□ -1.11
CCDC40-216ENST00000576241 RHEBQ15382 184 aa8.13□□□□□ -1.11
CCDC40-216ENST00000576241 RPS10P5Q9NQ39 176 aa8.13□□□□□ -1.11
CCDC40-216ENST00000576241 CRYGAP11844 174 aa8.12□□□□□ -1.11
CCDC40-216ENST00000576241 UBE2AP49459 152 aa8.12□□□□□ -1.11
CCDC40-216ENST00000576241 IGLC3P0DOY3 106 aa8.11□□□□□ -1.11
CCDC40-216ENST00000576241 PFN2P35080 140 aa8.11□□□□□ -1.11
CCDC40-216ENST00000576241 IGLV5-39A0A0G2JS06 123 aa8.1□□□□□ -1.11
CCDC40-216ENST00000576241 TSPAN13O95857 204 aa8.1□□□□□ -1.11
CCDC40-216ENST00000576241 TYMSOSQ8TAI1 123 aa8.1□□□□□ -1.11
CCDC40-216ENST00000576241 IGKV2-28A0A075B6P5 120 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 A0A087X002 238 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 IGKV2D-28P01615 120 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 HBDP02042 147 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 LINC00614P0C842 121 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 ZNF22P17026 224 aaPredicted RBP8.09□□□□□ -1.11
CCDC40-216ENST00000576241 C10orf91Q5T1B1 145 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 TRAPPC1Q9Y5R8 145 aa8.09□□□□□ -1.11
CCDC40-216ENST00000576241 A0A096LNJ9 63 aa8.08□□□□□ -1.12
CCDC40-216ENST00000576241 C18orf32Q8TCD1 76 aa8.08□□□□□ -1.12
CCDC40-216ENST00000576241 ERG28Q9UKR5 140 aa8.08□□□□□ -1.12
CCDC40-216ENST00000576241 SCO1O75880 301 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 COX17Q14061 63 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 PMCHL1Q16048 86 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 SFTA2Q6UW10 78 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 KRTAP13-1Q8IUC0 172 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 SND1-IT1Q9HBX3 110 aa8.07□□□□□ -1.12
CCDC40-216ENST00000576241 RPL24P83731 157 aaKnown RBP8.06□□□□□ -1.12
CCDC40-216ENST00000576241 ANAPC11Q9NYG5 84 aa8.06□□□□□ -1.12
CCDC40-216ENST00000576241 VPREB1P12018 145 aa8.05□□□□□ -1.12
CCDC40-216ENST00000576241 TMEM170BQ5T4T1 132 aa8.05□□□□□ -1.12
CCDC40-216ENST00000576241 BAGE3Q86Y29 109 aa8.05□□□□□ -1.12
CCDC40-216ENST00000576241 URB1-AS1Q96HZ7 61 aa8.05□□□□□ -1.12
CCDC40-216ENST00000576241 ZNF625Q96I27 306 aaPredicted RBP8.05□□□□□ -1.12
CCDC40-216ENST00000576241 C11orf86A6NJI1 115 aa8.04□□□□□ -1.12
CCDC40-216ENST00000576241 FAM229BQ4G0N7 80 aa8.04□□□□□ -1.12
CCDC40-216ENST00000576241 PRLHP81277 87 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms