RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMEM262E9PQX1 116 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 PAX4O43316 350 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 APOC4P55056 127 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 C5orf38Q86SI9 138 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 MIR7-3HGQ8N6C7 128 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 COX7A2LO14548 114 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 TMEM126AQ9H061 195 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 OTOGQ6ZRI0 2925 aa6.99□□□□□ -1.29
VPS53-220ENST00000576149 HECTD1Q9ULT8 2610 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 TEX49A0A1B0GTD5 131 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 GCN1Q92616 2671 aaKnown RBP6.98□□□□□ -1.29
VPS53-220ENST00000576149 FN1P02751 2386 aaKnown RBP6.98□□□□□ -1.29
VPS53-220ENST00000576149 A0A096LPF7 62 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 IGHV4-28A0A0C4DH34 117 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 IBA57-AS1B1ANH7 110 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 DEFB4AO15263 64 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 UBE2WQ96B02 151 aa6.98□□□□□ -1.29
VPS53-220ENST00000576149 SS18Q15532 418 aa6.97□□□□□ -1.29
VPS53-220ENST00000576149 C1orf195Q5TG92 126 aa6.97□□□□□ -1.29
VPS53-220ENST00000576149 MT-ATP8P03928 68 aa6.97□□□□□ -1.29
VPS53-220ENST00000576149 LINC00158P58513 81 aa6.97□□□□□ -1.29
VPS53-220ENST00000576149 TRAV13-2A0A0B4J235 113 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 XCL1P47992 114 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 DAD1P61803 113 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 WFDC9Q8NEX5 89 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 SND1-IT1Q9HBX3 110 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 IGKV2-28A0A075B6P5 120 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 LOC107984640A0A0U1RRK4 108 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 IGKV2D-28P01615 120 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 Q8NAQ8 132 aa6.96□□□□□ -1.3
VPS53-220ENST00000576149 MIFP14174 115 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 CCL18P55774 89 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 LINC01561Q8N1V8 128 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 LINC00337Q8N6G1 96 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 NOTCH2Q04721 2471 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 VWFP04275 2813 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 CRPP02741 224 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 CLPSL2Q6UWE3 100 aa6.95□□□□□ -1.3
VPS53-220ENST00000576149 NSD1Q96L73 2696 aaPredicted RBP6.94□□□□□ -1.3
VPS53-220ENST00000576149 ATP5G1P05496 136 aa6.94□□□□□ -1.3
VPS53-220ENST00000576149 RPL28P46779 137 aaKnown RBP6.94□□□□□ -1.3
VPS53-220ENST00000576149 Q8IZM0 81 aa6.94□□□□□ -1.3
VPS53-220ENST00000576149 CELA1Q9UNI1 258 aa6.94□□□□□ -1.3
VPS53-220ENST00000576149 TRACP01848 142 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 PFN2P35080 140 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 DEFB121Q5J5C9 76 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 KRTAP3-3Q9BYR6 98 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 KRTAP3-2Q9BYR7 98 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 TRAV8-4A0A0B4J246 113 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 J3KT08 172 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 CD164L2Q6UWJ8 174 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 LINC00269Q8N2A0 174 aa6.93□□□□□ -1.3
VPS53-220ENST00000576149 NHLRC4P0CG21 123 aaPredicted RBP6.92□□□□□ -1.3
VPS53-220ENST00000576149 SPART-AS1P0CW21 52 aa6.92□□□□□ -1.3
VPS53-220ENST00000576149 IGHV4-30-4P0DP06 118 aa6.92□□□□□ -1.3
VPS53-220ENST00000576149 C11orf68Q9H3H3 251 aaKnown RBP6.92□□□□□ -1.3
VPS53-220ENST00000576149 C11orf45Q8TAV5 145 aa6.92□□□□□ -1.3
VPS53-220ENST00000576149 FAM218AQ96MZ4 157 aa6.92□□□□□ -1.3
VPS53-220ENST00000576149 NBEAL2Q6ZNJ1 2754 aa6.92□□□□□ -1.3
VPS53-220ENST00000576149 FAM236DA0A1B0GTK5 79 aa6.91□□□□□ -1.3
VPS53-220ENST00000576149 CCDC179H3BU77 68 aa6.91□□□□□ -1.3
VPS53-220ENST00000576149 FAM236CP0DP71 79 aa6.91□□□□□ -1.3
VPS53-220ENST00000576149 Q8N3U1 123 aa6.91□□□□□ -1.3
VPS53-220ENST00000576149 ANGP03950 147 aaKnown RBP6.91□□□□□ -1.3
VPS53-220ENST00000576149 REG3AQ06141 175 aa6.91□□□□□ -1.3
VPS53-220ENST00000576149 CHCHD10Q8WYQ3 142 aaPredicted RBP6.91□□□□□ -1.3
VPS53-220ENST00000576149 KIAA0087Q14695 138 aa6.9□□□□□ -1.3
VPS53-220ENST00000576149 SMIM11BQ8TCY0 68 aa6.9□□□□□ -1.3
VPS53-220ENST00000576149 TENM1Q9UKZ4 2725 aa6.9□□□□□ -1.3
VPS53-220ENST00000576149 A0A1B0GX51 115 aa6.9□□□□□ -1.31
VPS53-220ENST00000576149 IGLV10-54A0A075B6I4 117 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 FAM240AA0A1B0GVK7 77 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 CD164Q04900 197 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 HRCT1Q6UXD1 115 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 HIVEP1P15822 2718 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 J3QL48 77 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 BAALC-AS2P0C853 105 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 RPS28P62857 69 aaKnown RBP6.89□□□□□ -1.31
VPS53-220ENST00000576149 LELP1Q5T871 98 aa6.89□□□□□ -1.31
VPS53-220ENST00000576149 HTN3P15516 51 aa6.88□□□□□ -1.31
VPS53-220ENST00000576149 CXCL5P42830 114 aa6.88□□□□□ -1.31
VPS53-220ENST00000576149 C22orf24Q9Y442 160 aa6.88□□□□□ -1.31
VPS53-220ENST00000576149 PRR26Q8N8Z3 221 aa6.88□□□□□ -1.31
VPS53-220ENST00000576149 TRRAPQ9Y4A5 3859 aa6.87□□□□□ -1.31
VPS53-220ENST00000576149 H0YGX0 51 aa6.87□□□□□ -1.31
VPS53-220ENST00000576149 SNCGO76070 127 aa6.87□□□□□ -1.31
VPS53-220ENST00000576149 COX17Q14061 63 aa6.87□□□□□ -1.31
VPS53-220ENST00000576149 A0A087WYN8 130 aa6.86□□□□□ -1.31
VPS53-220ENST00000576149 C15orf53Q8NAA6 179 aa6.86□□□□□ -1.31
VPS53-220ENST00000576149 Q9HAA7 133 aa6.86□□□□□ -1.31
VPS53-220ENST00000576149 ATRQ13535 2644 aa6.86□□□□□ -1.31
VPS53-220ENST00000576149 TEP1Q99973 2627 aaKnown RBP6.86□□□□□ -1.31
VPS53-220ENST00000576149 PRR34Q9NV39 138 aa6.85□□□□□ -1.31
VPS53-220ENST00000576149 KLK5Q9Y337 293 aaPredicted RBP6.85□□□□□ -1.31
VPS53-220ENST00000576149 NDUFC2O95298 119 aa6.85□□□□□ -1.31
VPS53-220ENST00000576149 ACYP1P07311 99 aa6.85□□□□□ -1.31
VPS53-220ENST00000576149 C2orf48Q96LS8 159 aa6.85□□□□□ -1.31
VPS53-220ENST00000576149 DNAL4O96015 105 aa6.84□□□□□ -1.31
VPS53-220ENST00000576149 GAGE2BQ13066 116 aa6.84□□□□□ -1.31
VPS53-220ENST00000576149 GAGE2EQ4V326 116 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms