RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 DIRC1Q969H9 104 aa13.72□□□□□ -0.21
CLN3-232ENST00000568443 SEC11CQ9BY50 192 aa13.72□□□□□ -0.21
CLN3-232ENST00000568443 CDKN2A-AS1Q9UH64 79 aa13.72□□□□□ -0.21
CLN3-232ENST00000568443 UBE2BP63146 152 aa13.71□□□□□ -0.21
CLN3-232ENST00000568443 C9orf129Q5T035 196 aaKnown RBP13.71□□□□□ -0.21
CLN3-232ENST00000568443 ERASQ7Z444 233 aa13.71□□□□□ -0.21
CLN3-232ENST00000568443 KRTAP7-1Q8IUC3 87 aa13.71□□□□□ -0.21
CLN3-232ENST00000568443 SCGB3A1Q96QR1 104 aa13.71□□□□□ -0.21
CLN3-232ENST00000568443 GNB1LQ9BYB4 327 aa13.71□□□□□ -0.21
CLN3-232ENST00000568443 LRP2P98164 4655 aa13.68□□□□□ -0.22
CLN3-232ENST00000568443 LINC01549A6NIU2 74 aa13.67□□□□□ -0.22
CLN3-232ENST00000568443 COX19Q49B96 90 aa13.66□□□□□ -0.22
CLN3-232ENST00000568443 LINC00469Q8N7U9 141 aa13.66□□□□□ -0.22
CLN3-232ENST00000568443 F8VRH5 84 aa13.65□□□□□ -0.22
CLN3-232ENST00000568443 COMMD7Q86VX2 200 aa13.65□□□□□ -0.22
CLN3-232ENST00000568443 LINC01546A6NGU7 62 aa13.64□□□□□ -0.23
CLN3-232ENST00000568443 H0Y9J4 135 aa13.64□□□□□ -0.23
CLN3-232ENST00000568443 TINCRA0A1B0GVN0 87 aa13.63□□□□□ -0.23
CLN3-232ENST00000568443 FABP9Q0Z7S8 132 aa13.63□□□□□ -0.23
CLN3-232ENST00000568443 XAGE1AQ9HD64 81 aa13.63□□□□□ -0.23
CLN3-232ENST00000568443 CXCL5P42830 114 aa13.62□□□□□ -0.23
CLN3-232ENST00000568443 FA2HQ7L5A8 372 aa13.62□□□□□ -0.23
CLN3-232ENST00000568443 MRPL18Q9H0U6 180 aaKnown RBP13.62□□□□□ -0.23
CLN3-232ENST00000568443 SMCO4Q9NRQ5 59 aa13.62□□□□□ -0.23
CLN3-232ENST00000568443 PDZD11Q5EBL8 140 aa13.61□□□□□ -0.23
CLN3-232ENST00000568443 PRR26Q8N8Z3 221 aa13.61□□□□□ -0.23
CLN3-232ENST00000568443 CST9LQ9H4G1 147 aa13.61□□□□□ -0.23
CLN3-232ENST00000568443 RPS10P5Q9NQ39 176 aa13.61□□□□□ -0.23
CLN3-232ENST00000568443 SMIM1B2RUZ4 78 aa13.6□□□□□ -0.23
CLN3-232ENST00000568443 C22orf24Q9Y442 160 aa13.6□□□□□ -0.23
CLN3-232ENST00000568443 RHEBQ15382 184 aa13.59□□□□□ -0.23
CLN3-232ENST00000568443 LBHQ53QV2 105 aaPredicted RBP13.59□□□□□ -0.23
CLN3-232ENST00000568443 C10orf91Q5T1B1 145 aa13.59□□□□□ -0.23
CLN3-232ENST00000568443 COX7B2Q8TF08 81 aa13.59□□□□□ -0.23
CLN3-232ENST00000568443 IGLV5-45A0A087WSX0 123 aa13.58□□□□□ -0.24
CLN3-232ENST00000568443 PMVKQ15126 192 aa13.58□□□□□ -0.24
CLN3-232ENST00000568443 CARHSP1Q9Y2V2 147 aaKnown RBP13.56□□□□□ -0.24
CLN3-232ENST00000568443 SPINK8P0C7L1 97 aa13.55□□□□□ -0.24
CLN3-232ENST00000568443 IGLV1-50A0A075B6I6 118 aa13.54□□□□□ -0.24
CLN3-232ENST00000568443 H3BRM9 83 aa13.53□□□□□ -0.24
CLN3-232ENST00000568443 NUPR1O60356 82 aa13.53□□□□□ -0.24
CLN3-232ENST00000568443 TP73-AS1Q9UF72 201 aa13.53□□□□□ -0.24
CLN3-232ENST00000568443 ZNF861PO60384 105 aa13.52□□□□□ -0.25
CLN3-232ENST00000568443 KRTAP1-4P0C5Y4 121 aa13.52□□□□□ -0.25
CLN3-232ENST00000568443 RAB5BP61020 215 aa13.52□□□□□ -0.25
CLN3-232ENST00000568443 MRPL55Q7Z7F7 128 aaKnown RBP13.52□□□□□ -0.25
CLN3-232ENST00000568443 NDUFA6P56556 154 aa13.51□□□□□ -0.25
CLN3-232ENST00000568443 TRAPPC1Q9Y5R8 145 aa13.51□□□□□ -0.25
CLN3-232ENST00000568443 LINC00614P0C842 121 aa13.49□□□□□ -0.25
CLN3-232ENST00000568443 C18orf32Q8TCD1 76 aa13.48□□□□□ -0.25
CLN3-232ENST00000568443 RNF213Q63HN8 5207 aa13.48□□□□□ -0.25
CLN3-232ENST00000568443 ATP5LO75964 103 aa13.47□□□□□ -0.25
CLN3-232ENST00000568443 RPL13AP40429 203 aaKnown RBP13.47□□□□□ -0.25
CLN3-232ENST00000568443 A0A096LNJ9 63 aa13.46□□□□□ -0.25
CLN3-232ENST00000568443 IGLC3P0DOY3 106 aa13.46□□□□□ -0.25
CLN3-232ENST00000568443 URB1-AS1Q96HZ7 61 aa13.46□□□□□ -0.25
CLN3-232ENST00000568443 LINC00167Q96N53 147 aa13.46□□□□□ -0.25
CLN3-232ENST00000568443 RPL37AP8A6NKH3 93 aa13.45□□□□□ -0.26
CLN3-232ENST00000568443 HBDP02042 147 aa13.45□□□□□ -0.26
CLN3-232ENST00000568443 APOC3P02656 99 aa13.45□□□□□ -0.26
CLN3-232ENST00000568443 BCE1O60756 84 aa13.44□□□□□ -0.26
CLN3-232ENST00000568443 RPL28P46779 137 aaKnown RBP13.44□□□□□ -0.26
CLN3-232ENST00000568443 IGLV5-39A0A0G2JS06 123 aa13.43□□□□□ -0.26
CLN3-232ENST00000568443 GAGE10A6NGK3 116 aa13.43□□□□□ -0.26
CLN3-232ENST00000568443 PMCHL1Q16048 86 aa13.43□□□□□ -0.26
CLN3-232ENST00000568443 NKAPP1Q8N9T2 125 aa13.43□□□□□ -0.26
CLN3-232ENST00000568443 ZNF22P17026 224 aaPredicted RBP13.42□□□□□ -0.26
CLN3-232ENST00000568443 PFN2P35080 140 aa13.42□□□□□ -0.26
CLN3-232ENST00000568443 NDUFA5Q16718 116 aa13.42□□□□□ -0.26
CLN3-232ENST00000568443 IGLV5-37A0A075B6J1 123 aa13.41□□□□□ -0.26
CLN3-232ENST00000568443 SNAPINO95295 136 aa13.41□□□□□ -0.26
CLN3-232ENST00000568443 BAGE3Q86Y29 109 aa13.4□□□□□ -0.26
CLN3-232ENST00000568443 SVBPQ8N300 66 aa13.4□□□□□ -0.26
CLN3-232ENST00000568443 C11orf86A6NJI1 115 aa13.36□□□□□ -0.27
CLN3-232ENST00000568443 TMEM170BQ5T4T1 132 aa13.36□□□□□ -0.27
CLN3-232ENST00000568443 ERG28Q9UKR5 140 aa13.36□□□□□ -0.27
CLN3-232ENST00000568443 LPAP08519 4548 aa13.36□□□□□ -0.27
CLN3-232ENST00000568443 COX17Q14061 63 aa13.35□□□□□ -0.27
CLN3-232ENST00000568443 SND1-IT1Q9HBX3 110 aa13.35□□□□□ -0.27
CLN3-232ENST00000568443 UBE2AP49459 152 aa13.34□□□□□ -0.27
CLN3-232ENST00000568443 ZNF625Q96I27 306 aaPredicted RBP13.34□□□□□ -0.27
CLN3-232ENST00000568443 IGKV2-28A0A075B6P5 120 aa13.33□□□□□ -0.28
CLN3-232ENST00000568443 SCO1O75880 301 aa13.33□□□□□ -0.28
CLN3-232ENST00000568443 IGKV2D-28P01615 120 aa13.33□□□□□ -0.28
CLN3-232ENST00000568443 CHTOPQ9Y3Y2 248 aaKnown RBP13.33□□□□□ -0.28
CLN3-232ENST00000568443 SFTA2Q6UW10 78 aa13.32□□□□□ -0.28
CLN3-232ENST00000568443 CRYGAP11844 174 aa13.31□□□□□ -0.28
CLN3-232ENST00000568443 RPL24P83731 157 aaKnown RBP13.31□□□□□ -0.28
CLN3-232ENST00000568443 VPREB1P12018 145 aa13.3□□□□□ -0.28
CLN3-232ENST00000568443 PRR4Q16378 134 aa13.3□□□□□ -0.28
CLN3-232ENST00000568443 CHCHD1Q96BP2 118 aaKnown RBP13.3□□□□□ -0.28
CLN3-232ENST00000568443 A0A087X002 238 aa13.29□□□□□ -0.28
CLN3-232ENST00000568443 KRTAP13-1Q8IUC0 172 aa13.29□□□□□ -0.28
CLN3-232ENST00000568443 TYMSOSQ8TAI1 123 aa13.28□□□□□ -0.28
CLN3-232ENST00000568443 YPEL4Q96NS1 127 aa13.28□□□□□ -0.28
CLN3-232ENST00000568443 TSPAN13O95857 204 aa13.27□□□□□ -0.29
CLN3-232ENST00000568443 TRAV12-1A0A0B4J245 112 aa13.26□□□□□ -0.29
CLN3-232ENST00000568443 IFI27L1Q96BM0 104 aa13.26□□□□□ -0.29
CLN3-232ENST00000568443 ANAPC11Q9NYG5 84 aa13.26□□□□□ -0.29
CLN3-232ENST00000568443 LINC00158P58513 81 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms