RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 GAGE2DQ9UEU5 116 aa11.39□□□□□ -0.59
SMPD3-209ENST00000567223 CDKN2A-AS1Q9UH64 79 aa11.39□□□□□ -0.59
SMPD3-209ENST00000567223 CARHSP1Q9Y2V2 147 aaKnown RBP11.39□□□□□ -0.59
SMPD3-209ENST00000567223 IGLV5-45A0A087WSX0 123 aa11.38□□□□□ -0.59
SMPD3-209ENST00000567223 IGLV7-43P04211 117 aa11.38□□□□□ -0.59
SMPD3-209ENST00000567223 CXCL5P42830 114 aa11.38□□□□□ -0.59
SMPD3-209ENST00000567223 CKS1BP61024 79 aa11.38□□□□□ -0.59
SMPD3-209ENST00000567223 C6orf226Q5I0X4 101 aa11.38□□□□□ -0.59
SMPD3-209ENST00000567223 GEMIN7Q9H840 131 aaKnown RBP11.38□□□□□ -0.59
SMPD3-209ENST00000567223 C9orf129Q5T035 196 aaKnown RBP11.37□□□□□ -0.59
SMPD3-209ENST00000567223 FAM19A5Q7Z5A7 132 aaPredicted RBP11.37□□□□□ -0.59
SMPD3-209ENST00000567223 DIRC1Q969H9 104 aa11.37□□□□□ -0.59
SMPD3-209ENST00000567223 SCGB3A1Q96QR1 104 aa11.37□□□□□ -0.59
SMPD3-209ENST00000567223 TINCRA0A1B0GVN0 87 aa11.36□□□□□ -0.59
SMPD3-209ENST00000567223 F8VRH5 84 aa11.36□□□□□ -0.59
SMPD3-209ENST00000567223 M0QXV9 152 aa11.36□□□□□ -0.59
SMPD3-209ENST00000567223 COMMD7Q86VX2 200 aa11.36□□□□□ -0.59
SMPD3-209ENST00000567223 KRTAP11-1Q8IUC1 163 aa11.35□□□□□ -0.59
SMPD3-209ENST00000567223 TOMM7Q9P0U1 55 aa11.35□□□□□ -0.59
SMPD3-209ENST00000567223 LRP2P98164 4655 aa11.34□□□□□ -0.59
SMPD3-209ENST00000567223 PDZD11Q5EBL8 140 aa11.34□□□□□ -0.59
SMPD3-209ENST00000567223 SMIM1B2RUZ4 78 aa11.33□□□□□ -0.6
SMPD3-209ENST00000567223 H0Y9J4 135 aa11.33□□□□□ -0.6
SMPD3-209ENST00000567223 MRPL18Q9H0U6 180 aaKnown RBP11.33□□□□□ -0.6
SMPD3-209ENST00000567223 CST9LQ9H4G1 147 aa11.32□□□□□ -0.6
SMPD3-209ENST00000567223 PMVKQ15126 192 aa11.31□□□□□ -0.6
SMPD3-209ENST00000567223 LINC00469Q8N7U9 141 aa11.31□□□□□ -0.6
SMPD3-209ENST00000567223 TP73-AS1Q9UF72 201 aa11.31□□□□□ -0.6
SMPD3-209ENST00000567223 FA2HQ7L5A8 372 aa11.3□□□□□ -0.6
SMPD3-209ENST00000567223 UBE2BP63146 152 aa11.29□□□□□ -0.6
SMPD3-209ENST00000567223 FABP9Q0Z7S8 132 aa11.29□□□□□ -0.6
SMPD3-209ENST00000567223 RPS10P5Q9NQ39 176 aa11.29□□□□□ -0.6
SMPD3-209ENST00000567223 SMCO4Q9NRQ5 59 aa11.29□□□□□ -0.6
SMPD3-209ENST00000567223 NUPR1O60356 82 aa11.27□□□□□ -0.61
SMPD3-209ENST00000567223 LBHQ53QV2 105 aaPredicted RBP11.27□□□□□ -0.61
SMPD3-209ENST00000567223 COX7B2Q8TF08 81 aa11.27□□□□□ -0.61
SMPD3-209ENST00000567223 C22orf24Q9Y442 160 aa11.27□□□□□ -0.61
SMPD3-209ENST00000567223 A0A096LNJ9 63 aa11.26□□□□□ -0.61
SMPD3-209ENST00000567223 KRTAP1-4P0C5Y4 121 aa11.26□□□□□ -0.61
SMPD3-209ENST00000567223 IGLV1-50A0A075B6I6 118 aa11.25□□□□□ -0.61
SMPD3-209ENST00000567223 IGLC3P0DOY3 106 aa11.25□□□□□ -0.61
SMPD3-209ENST00000567223 XAGE1AQ9HD64 81 aa11.25□□□□□ -0.61
SMPD3-209ENST00000567223 H3BRM9 83 aa11.24□□□□□ -0.61
SMPD3-209ENST00000567223 LINC00614P0C842 121 aa11.24□□□□□ -0.61
SMPD3-209ENST00000567223 C18orf32Q8TCD1 76 aa11.24□□□□□ -0.61
SMPD3-209ENST00000567223 IGLV5-39A0A0G2JS06 123 aa11.23□□□□□ -0.61
SMPD3-209ENST00000567223 ZNF861PO60384 105 aa11.23□□□□□ -0.61
SMPD3-209ENST00000567223 MRPL55Q7Z7F7 128 aaKnown RBP11.23□□□□□ -0.61
SMPD3-209ENST00000567223 URB1-AS1Q96HZ7 61 aa11.23□□□□□ -0.61
SMPD3-209ENST00000567223 TRAPPC1Q9Y5R8 145 aa11.23□□□□□ -0.61
SMPD3-209ENST00000567223 IGLV5-37A0A075B6J1 123 aa11.22□□□□□ -0.61
SMPD3-209ENST00000567223 SVBPQ8N300 66 aa11.22□□□□□ -0.61
SMPD3-209ENST00000567223 SNAPINO95295 136 aa11.21□□□□□ -0.61
SMPD3-209ENST00000567223 HBDP02042 147 aa11.21□□□□□ -0.61
SMPD3-209ENST00000567223 SPINK8P0C7L1 97 aa11.21□□□□□ -0.61
SMPD3-209ENST00000567223 RAB5BP61020 215 aa11.2□□□□□ -0.62
SMPD3-209ENST00000567223 PRR26Q8N8Z3 221 aa11.2□□□□□ -0.62
SMPD3-209ENST00000567223 ATP5LO75964 103 aa11.19□□□□□ -0.62
SMPD3-209ENST00000567223 RPL13AP40429 203 aaKnown RBP11.19□□□□□ -0.62
SMPD3-209ENST00000567223 NDUFA5Q16718 116 aa11.19□□□□□ -0.62
SMPD3-209ENST00000567223 RNF213Q63HN8 5207 aa11.19□□□□□ -0.62
SMPD3-209ENST00000567223 APOC3P02656 99 aa11.18□□□□□ -0.62
SMPD3-209ENST00000567223 SFTA2Q6UW10 78 aa11.18□□□□□ -0.62
SMPD3-209ENST00000567223 ZNF22P17026 224 aaPredicted RBP11.17□□□□□ -0.62
SMPD3-209ENST00000567223 BCE1O60756 84 aa11.16□□□□□ -0.62
SMPD3-209ENST00000567223 COX17Q14061 63 aa11.16□□□□□ -0.62
SMPD3-209ENST00000567223 YPEL4Q96NS1 127 aa11.16□□□□□ -0.62
SMPD3-209ENST00000567223 LINC00167Q96N53 147 aa11.15□□□□□ -0.62
SMPD3-209ENST00000567223 RPL28P46779 137 aaKnown RBP11.14□□□□□ -0.63
SMPD3-209ENST00000567223 NDUFA6P56556 154 aa11.12□□□□□ -0.63
SMPD3-209ENST00000567223 CHCHD1Q96BP2 118 aaKnown RBP11.12□□□□□ -0.63
SMPD3-209ENST00000567223 PMCHL1Q16048 86 aa11.11□□□□□ -0.63
SMPD3-209ENST00000567223 BAGE3Q86Y29 109 aa11.11□□□□□ -0.63
SMPD3-209ENST00000567223 KRTAP13-1Q8IUC0 172 aa11.11□□□□□ -0.63
SMPD3-209ENST00000567223 ERG28Q9UKR5 140 aa11.11□□□□□ -0.63
SMPD3-209ENST00000567223 TRAV12-1A0A0B4J245 112 aa11.1□□□□□ -0.63
SMPD3-209ENST00000567223 C11orf86A6NJI1 115 aa11.1□□□□□ -0.63
SMPD3-209ENST00000567223 NKAPP1Q8N9T2 125 aa11.1□□□□□ -0.63
SMPD3-209ENST00000567223 ZNF625Q96I27 306 aaPredicted RBP11.09□□□□□ -0.63
SMPD3-209ENST00000567223 RPL37AP8A6NKH3 93 aa11.08□□□□□ -0.64
SMPD3-209ENST00000567223 VPREB1P12018 145 aa11.07□□□□□ -0.64
SMPD3-209ENST00000567223 PFN2P35080 140 aa11.07□□□□□ -0.64
SMPD3-209ENST00000567223 TMEM170BQ5T4T1 132 aa11.07□□□□□ -0.64
SMPD3-209ENST00000567223 SND1-IT1Q9HBX3 110 aa11.07□□□□□ -0.64
SMPD3-209ENST00000567223 RPL24P83731 157 aaKnown RBP11.06□□□□□ -0.64
SMPD3-209ENST00000567223 CHTOPQ9Y3Y2 248 aaKnown RBP11.06□□□□□ -0.64
SMPD3-209ENST00000567223 TMEM223A0PJW6 202 aa11.04□□□□□ -0.64
SMPD3-209ENST00000567223 GAGE10A6NGK3 116 aa11.04□□□□□ -0.64
SMPD3-209ENST00000567223 IFI27L1Q96BM0 104 aa11.04□□□□□ -0.64
SMPD3-209ENST00000567223 LPAP08519 4548 aa11.04□□□□□ -0.64
SMPD3-209ENST00000567223 A0A087X002 238 aa11.02□□□□□ -0.65
SMPD3-209ENST00000567223 CRYGAP11844 174 aa11.02□□□□□ -0.65
SMPD3-209ENST00000567223 IGKV2-28A0A075B6P5 120 aa11.01□□□□□ -0.65
SMPD3-209ENST00000567223 IGKV2D-28P01615 120 aa11.01□□□□□ -0.65
SMPD3-209ENST00000567223 UBE2AP49459 152 aa11.01□□□□□ -0.65
SMPD3-209ENST00000567223 FAM229BQ4G0N7 80 aa11.01□□□□□ -0.65
SMPD3-209ENST00000567223 TMEM126AQ9H061 195 aa11□□□□□ -0.65
SMPD3-209ENST00000567223 HSBP1O75506 76 aa10.98□□□□□ -0.65
SMPD3-209ENST00000567223 SCO1O75880 301 aa10.98□□□□□ -0.65
SMPD3-209ENST00000567223 Q8NDZ9 215 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms