RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 C10orf95Q9H7T3 257 aa0.69□□□□□ -2.3
SRP54-204ENST00000553923 PLAC8Q9NZF1 115 aa0.69□□□□□ -2.3
SRP54-204ENST00000553923 RGPD3A6NKT7 1758 aaPredicted RBP0.69□□□□□ -2.3
SRP54-204ENST00000553923 DIP2BQ9P265 1576 aa0.69□□□□□ -2.3
SRP54-204ENST00000553923 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.69□□□□□ -2.3
SRP54-204ENST00000553923 NDUFB1O75438 58 aa0.68□□□□□ -2.3
SRP54-204ENST00000553923 PDCD11Q14690 1871 aaKnown RBP0.68□□□□□ -2.3
SRP54-204ENST00000553923 DEFB121Q5J5C9 76 aa0.68□□□□□ -2.3
SRP54-204ENST00000553923 ATP5EP2Q5VTU8 51 aa0.68□□□□□ -2.3
SRP54-204ENST00000553923 ABCC1P33527 1531 aa0.68□□□□□ -2.3
SRP54-204ENST00000553923 PRRC2BQ5JSZ5 2229 aaKnown RBP0.67□□□□□ -2.3
SRP54-204ENST00000553923 SPTY2D1-AS1A0A0U1RR47 76 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 SMIM31A0A1B0GVY4 71 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 Q8IZM0 81 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 CNFNQ9BYD5 112 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 CRIPTQ9P021 101 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 DOCK11Q5JSL3 2073 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 KCPQ6ZWJ8 1503 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 ATP7BP35670 1465 aa0.67□□□□□ -2.3
SRP54-204ENST00000553923 RP1L1Q8IWN7 2480 aaPredicted RBP0.66□□□□□ -2.3
SRP54-204ENST00000553923 SETBP1Q9Y6X0 1596 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 LAMA4Q16363 1823 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 PPLO60437 1756 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 I3L3M4 83 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 IFI6P09912 130 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 RPL38P63173 70 aaKnown RBP0.66□□□□□ -2.3
SRP54-204ENST00000553923 USMG5Q96IX5 58 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 GNG13Q9P2W3 67 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 HILPDAQ9Y5L2 63 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 KIAA0100Q14667 2235 aaKnown RBP0.66□□□□□ -2.3
SRP54-204ENST00000553923 NUP188Q5SRE5 1749 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 SAMD9Q5K651 1589 aa0.66□□□□□ -2.3
SRP54-204ENST00000553923 URB2Q14146 1524 aaKnown RBP0.65□□□□□ -2.31
SRP54-204ENST00000553923 LRRC7Q96NW7 1537 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 I3L2K1 104 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 COX7BP24311 80 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 Q5BKY6 102 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 HEPN1Q6WQI6 88 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 FXYD6Q9H0Q3 95 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 MAP2P11137 1827 aaKnown RBP0.65□□□□□ -2.31
SRP54-204ENST00000553923 FLG2Q5D862 2391 aaPredicted RBP0.65□□□□□ -2.31
SRP54-204ENST00000553923 NCOA2Q15596 1464 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 CNTRLQ7Z7A1 2325 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 C5P01031 1676 aa0.65□□□□□ -2.31
SRP54-204ENST00000553923 UGGT2Q9NYU1 1516 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 TARBP1Q13395 1621 aaKnown RBP0.64□□□□□ -2.31
SRP54-204ENST00000553923 UBR1Q8IWV7 1749 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 XRN1Q8IZH2 1706 aaKnown RBP0.64□□□□□ -2.31
SRP54-204ENST00000553923 WNK3Q9BYP7 1800 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 ASCC3Q8N3C0 2202 aaKnown RBP0.64□□□□□ -2.31
SRP54-204ENST00000553923 NREPQ16612 68 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 CCDC141Q6ZP82 1450 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 LRRC9Q6ZRR7 1453 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 DUOX2Q9NRD8 1548 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 CLIP1P30622 1438 aa0.64□□□□□ -2.31
SRP54-204ENST00000553923 CCDC88BA6NC98 1476 aa0.63□□□□□ -2.31
SRP54-204ENST00000553923 NKTRP30414 1462 aaKnown RBP0.63□□□□□ -2.31
SRP54-204ENST00000553923 CPSF4LA6NMK7 179 aaKnown RBP0.63□□□□□ -2.31
SRP54-204ENST00000553923 COX8AP10176 69 aa0.63□□□□□ -2.31
SRP54-204ENST00000553923 KIAA0556O60303 1618 aa0.63□□□□□ -2.31
SRP54-204ENST00000553923 NHSL1Q5SYE7 1610 aa0.63□□□□□ -2.31
SRP54-204ENST00000553923 KDM3BQ7LBC6 1761 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 F5P12259 2224 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 SHPRHQ149N8 1683 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 CFAP74Q9C0B2 1584 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 KMT2BQ9UMN6 2715 aaPredicted RBP0.62□□□□□ -2.31
SRP54-204ENST00000553923 ABCA1O95477 2261 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 CRYBG1Q9Y4K1 1723 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 K7EQZ3 153 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 COX6B1P14854 86 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 PRB3Q04118 309 aaPredicted RBP0.62□□□□□ -2.31
SRP54-204ENST00000553923 APLNQ9ULZ1 77 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 TMEM131LA2VDJ0 1609 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 ZFHX3Q15911 3703 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 SLIT1O75093 1534 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 TULP4Q9NRJ4 1543 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 DNMBPQ6XZF7 1577 aa0.62□□□□□ -2.31
SRP54-204ENST00000553923 A0A0G2JMZ2 1700 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 LAMC1P11047 1609 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 ATXN8Q156A1 80 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 DEFB123Q8N688 67 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 S100ZQ8WXG8 99 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 MUC5BQ9HC84 5762 aaPredicted RBP0.61□□□□□ -2.31
SRP54-204ENST00000553923 MYH4Q9Y623 1939 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 MED13LQ71F56 2210 aa0.61□□□□□ -2.31
SRP54-204ENST00000553923 ASH1LQ9NR48 2969 aaKnown RBP0.6□□□□□ -2.31
SRP54-204ENST00000553923 PAPPAQ13219 1627 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 NDUFA4O00483 81 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 MYO7BQ6PIF6 2116 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 ABCA8O94911 1581 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 LRRIQ1Q96JM4 1722 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 HELZ2Q9BYK8 2649 aaKnown RBP0.6□□□□□ -2.31
SRP54-204ENST00000553923 PIK3C2BO00750 1634 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 PAPPA2Q9BXP8 1791 aa0.6□□□□□ -2.31
SRP54-204ENST00000553923 MRPL34Q9BQ48 92 aaKnown RBP0.59□□□□□ -2.31
SRP54-204ENST00000553923 IQGAP3Q86VI3 1631 aa0.59□□□□□ -2.32
SRP54-204ENST00000553923 USP32Q8NFA0 1604 aa0.59□□□□□ -2.32
SRP54-204ENST00000553923 PTPN23Q9H3S7 1636 aa0.59□□□□□ -2.32
SRP54-204ENST00000553923 AHNAK2Q8IVF2 5795 aa0.59□□□□□ -2.32
SRP54-204ENST00000553923 MYO7AQ13402 2215 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 208.8 ms