RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 C4orf26Q17RF5 130 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 RNF152Q8N8N0 203 aa3.43□□□□□ -1.86
LIMA1-214ENST00000552783 UBR5O95071 2799 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-214ENST00000552783 DNAJC9-AS1A6NH13 148 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 CXCL5P42830 114 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 CDC42SE2Q9NRR3 84 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 TMEM89A2RUT3 159 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 J3KT08 172 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 LECT2O14960 151 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 RPL28P46779 137 aaKnown RBP3.42□□□□□ -1.86
LIMA1-214ENST00000552783 PRR3P79522 188 aaKnown RBP3.42□□□□□ -1.86
LIMA1-214ENST00000552783 DPH3Q96FX2 82 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 SND1-IT1Q9HBX3 110 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 DEFB4AO15263 64 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 CCL18P55774 89 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 RPL18AQ02543 176 aaKnown RBP3.42□□□□□ -1.86
LIMA1-214ENST00000552783 FAM222AQ5U5X8 452 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 LRRC75A-AS1Q8N1F1 130 aa3.42□□□□□ -1.86
LIMA1-214ENST00000552783 VWFP04275 2813 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 FHL2Q14192 279 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 ODF3L2Q3SX64 289 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 ZNF843Q8N446 348 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 C4orf3Q8WVX3 66 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 DNAL4O96015 105 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 TMEM243Q9BU79 118 aa3.41□□□□□ -1.86
LIMA1-214ENST00000552783 IGLV4-60A0A075B6I1 120 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 USP17L23D6RBM5 183 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 CRPP02741 224 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 C1orf158Q8N1D5 194 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 OBSCN-AS1Q96MR7 158 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 CR1P17927 2039 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 K7EQD1 137 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 ATOX1O00244 68 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 PAX4O43316 350 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 INAFM2P0DMQ5 153 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 FAM19A1Q7Z5A9 133 aa3.4□□□□□ -1.86
LIMA1-214ENST00000552783 TEP1Q99973 2627 aaKnown RBP3.4□□□□□ -1.87
LIMA1-214ENST00000552783 A8MTW9 85 aa3.4□□□□□ -1.87
LIMA1-214ENST00000552783 XCL1P47992 114 aa3.4□□□□□ -1.87
LIMA1-214ENST00000552783 C5orf47Q569G3 176 aa3.4□□□□□ -1.87
LIMA1-214ENST00000552783 Q5XG85 94 aa3.4□□□□□ -1.87
LIMA1-214ENST00000552783 FAM19A3Q7Z5A8 133 aa3.4□□□□□ -1.87
LIMA1-214ENST00000552783 IGLV10-54A0A075B6I4 117 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 C6orf226Q5I0X4 101 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 HRCT1Q6UXD1 115 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 SERP2Q8N6R1 65 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 SPATA3Q8NHX4 192 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 SMR3AQ99954 134 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 UNC79Q9P2D8 2635 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 TRAV23DV6A0A075B6W5 121 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 A0A096LNT2 108 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 TRAV13-2A0A0B4J235 113 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 COX7B2Q8TF08 81 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 M0R2N4 97 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 Q6JHZ5 121 aa3.39□□□□□ -1.87
LIMA1-214ENST00000552783 NANOS2P60321 138 aaKnown RBP3.38□□□□□ -1.87
LIMA1-214ENST00000552783 RPS28P62857 69 aaKnown RBP3.38□□□□□ -1.87
LIMA1-214ENST00000552783 Q8NDZ9 215 aa3.38□□□□□ -1.87
LIMA1-214ENST00000552783 LINC01006Q8NI28 216 aa3.38□□□□□ -1.87
LIMA1-214ENST00000552783 IGHV3OR16-9A0A0B4J2B5 98 aa3.38□□□□□ -1.87
LIMA1-214ENST00000552783 ENHOQ6UWT2 76 aa3.38□□□□□ -1.87
LIMA1-214ENST00000552783 IL17DQ8TAD2 202 aa3.38□□□□□ -1.87
LIMA1-214ENST00000552783 GYPEP15421 78 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 LINC00482Q8N8I6 264 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 F8P00451 2351 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 GIG44P09565 113 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-214ENST00000552783 DEFB135Q30KP9 77 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 COPS9Q8WXC6 57 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 MAST4O15021 2626 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 PLAC8L1A1L4L8 177 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 GHRHP01286 108 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 TMEM258P61165 79 aa3.37□□□□□ -1.87
LIMA1-214ENST00000552783 J3QKU1 62 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 LCE2BO14633 110 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 CCKP06307 115 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 ANK3Q12955 4377 aaKnown RBP3.36□□□□□ -1.87
LIMA1-214ENST00000552783 ANGP03950 147 aaKnown RBP3.36□□□□□ -1.87
LIMA1-214ENST00000552783 C9orf116Q5BN46 136 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-214ENST00000552783 C20orf197Q8N268 126 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 Q8N3U1 123 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 C16orf74Q96GX8 76 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 PKD1L1Q8TDX9 2849 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 TRBV6-4A0A1B0GX49 114 aa3.36□□□□□ -1.87
LIMA1-214ENST00000552783 NOTCH1P46531 2555 aa3.35□□□□□ -1.87
LIMA1-214ENST00000552783 TRBV10-1A0A0K0K1A3 114 aa3.35□□□□□ -1.87
LIMA1-214ENST00000552783 H0YGX0 51 aa3.35□□□□□ -1.87
LIMA1-214ENST00000552783 ORMDL1Q9P0S3 153 aa3.35□□□□□ -1.87
LIMA1-214ENST00000552783 TRAV25A0A0B4J276 109 aa3.35□□□□□ -1.87
LIMA1-214ENST00000552783 A0A087WZ39 114 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 IBA57-AS1B1ANH7 110 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 LY6G6DO95868 133 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 TMEM86BQ8N661 226 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 Q8N814 137 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 NBEAL1Q6ZS30 2694 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 TRAV10A0A0B4J240 114 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 DAD1P61803 113 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 TRRAPQ9Y4A5 3859 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 PDZD2O15018 2839 aa3.34□□□□□ -1.87
LIMA1-214ENST00000552783 TRBV6-8A0A0A6YYG3 113 aa3.34□□□□□ -1.88
LIMA1-214ENST00000552783 LOC100996750A0A140TA64 210 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms