RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM240AA0A1B0GVK7 77 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 FAM229AH3BQW9 127 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 CRPP02741 224 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 RNASE1P07998 156 aaKnown RBP5.22□□□□□ -1.57
LIMA1-213ENST00000552720 Q6Q795 121 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 SPATA3Q8NHX4 192 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 SMIM11BQ8TCY0 68 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 COPS9Q8WXC6 57 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 SMR3AQ99954 134 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 TRRAPQ9Y4A5 3859 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 TRACP01848 142 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 ATP5G1P05496 136 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 KRTAP10-3P60369 221 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 PKD1L1Q8TDX9 2849 aa5.22□□□□□ -1.57
LIMA1-213ENST00000552720 LINC00959A0A1B0GUT2 108 aa5.21□□□□□ -1.57
LIMA1-213ENST00000552720 RPL28P46779 137 aaKnown RBP5.21□□□□□ -1.57
LIMA1-213ENST00000552720 XCL1P47992 114 aa5.21□□□□□ -1.57
LIMA1-213ENST00000552720 C16orf95Q9H693 158 aa5.21□□□□□ -1.57
LIMA1-213ENST00000552720 ATRQ13535 2644 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 A0A087WZ39 114 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 TRAV13-2A0A0B4J235 113 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 GYPEP15421 78 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 Q8N3U1 123 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 NOTCH2Q04721 2471 aa5.21□□□□□ -1.58
LIMA1-213ENST00000552720 DEFB4AO15263 64 aa5.2□□□□□ -1.58
LIMA1-213ENST00000552720 MALP21145 153 aa5.2□□□□□ -1.58
LIMA1-213ENST00000552720 CMC4P56277 68 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-213ENST00000552720 NSD1Q96L73 2696 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-213ENST00000552720 LINC00482Q8N8I6 264 aa5.2□□□□□ -1.58
LIMA1-213ENST00000552720 FAM110AQ9BQ89 295 aa5.2□□□□□ -1.58
LIMA1-213ENST00000552720 PAX4O43316 350 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 FAM222AQ5U5X8 452 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 OR13C6PQ8NH95 151 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 X6R8D5 127 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 TRBV7-7A0A0K0K1E9 115 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 IBA57-AS1B1ANH7 110 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 SLPIP03973 132 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 PRR3P79522 188 aaKnown RBP5.19□□□□□ -1.58
LIMA1-213ENST00000552720 MRPL23Q16540 153 aaKnown RBP5.19□□□□□ -1.58
LIMA1-213ENST00000552720 C6orf226Q5I0X4 101 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 GAGE2AQ6NT46 116 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 C3orf56Q8N813 242 aa5.19□□□□□ -1.58
LIMA1-213ENST00000552720 TEP1Q99973 2627 aaKnown RBP5.19□□□□□ -1.58
LIMA1-213ENST00000552720 PPDPFQ9H3Y8 114 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 IGLV10-54A0A075B6I4 117 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 FAM236AA0A1B0GUQ0 79 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 FAM236BA0A1B0GV22 79 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 LECT2O14960 151 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 HILS1P60008 231 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 C14orf132Q9NPU4 83 aa5.18□□□□□ -1.58
LIMA1-213ENST00000552720 DNAL4O96015 105 aa5.17□□□□□ -1.58
LIMA1-213ENST00000552720 LINC00612Q8N6U2 182 aa5.17□□□□□ -1.58
LIMA1-213ENST00000552720 KIR2DL5BQ8NHK3 375 aa5.17□□□□□ -1.58
LIMA1-213ENST00000552720 H3BS24 57 aa5.17□□□□□ -1.58
LIMA1-213ENST00000552720 ACYP1P07311 99 aa5.17□□□□□ -1.58
LIMA1-213ENST00000552720 SS18Q15532 418 aa5.16□□□□□ -1.58
LIMA1-213ENST00000552720 C9orf116Q5BN46 136 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-213ENST00000552720 LINC00269Q8N2A0 174 aa5.16□□□□□ -1.58
LIMA1-213ENST00000552720 KMT2BQ9UMN6 2715 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-213ENST00000552720 NCR3O14931 201 aa5.16□□□□□ -1.58
LIMA1-213ENST00000552720 DEFB135Q30KP9 77 aa5.16□□□□□ -1.58
LIMA1-213ENST00000552720 SDIM1Q6ZPB5 146 aa5.16□□□□□ -1.58
LIMA1-213ENST00000552720 LINC00643Q86TS7 51 aa5.15□□□□□ -1.58
LIMA1-213ENST00000552720 PRO0255Q9UI72 69 aa5.15□□□□□ -1.58
LIMA1-213ENST00000552720 A0A1B0GUV1 79 aa5.15□□□□□ -1.59
LIMA1-213ENST00000552720 INAFM2P0DMQ5 153 aa5.15□□□□□ -1.59
LIMA1-213ENST00000552720 NANOS2P60321 138 aaKnown RBP5.15□□□□□ -1.59
LIMA1-213ENST00000552720 Q8NDZ9 215 aa5.15□□□□□ -1.59
LIMA1-213ENST00000552720 H0YGX0 51 aa5.14□□□□□ -1.59
LIMA1-213ENST00000552720 KIAA0087Q14695 138 aa5.14□□□□□ -1.59
LIMA1-213ENST00000552720 Q8IZM0 81 aa5.14□□□□□ -1.59
LIMA1-213ENST00000552720 LINC00526Q96FQ7 95 aa5.14□□□□□ -1.59
LIMA1-213ENST00000552720 LY6G6DO95868 133 aa5.14□□□□□ -1.59
LIMA1-213ENST00000552720 ANGP03950 147 aaKnown RBP5.14□□□□□ -1.59
LIMA1-213ENST00000552720 CHCHD10Q8WYQ3 142 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-213ENST00000552720 CELA1Q9UNI1 258 aa5.13□□□□□ -1.59
LIMA1-213ENST00000552720 IGKV3D-7A0A0C4DH55 119 aa5.13□□□□□ -1.59
LIMA1-213ENST00000552720 LINC00846Q9NV44 126 aa5.13□□□□□ -1.59
LIMA1-213ENST00000552720 REG3AQ06141 175 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 C6orf223Q8N319 242 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 OBSCN-AS1Q96MR7 158 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 IMUPQ9GZP8 106 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 KLK5Q9Y337 293 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-213ENST00000552720 IGHV4-28A0A0C4DH34 117 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 HTN3P15516 51 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 C10orf25Q5T742 122 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 CD164L2Q6UWJ8 174 aa5.12□□□□□ -1.59
LIMA1-213ENST00000552720 ORMDL1Q9P0S3 153 aa5.11□□□□□ -1.59
LIMA1-213ENST00000552720 TENM3Q9P273 2699 aa5.11□□□□□ -1.59
LIMA1-213ENST00000552720 A0A087WVE0 104 aa5.11□□□□□ -1.59
LIMA1-213ENST00000552720 SMIM9A6NGZ8 99 aa5.11□□□□□ -1.59
LIMA1-213ENST00000552720 PLA2G2DQ9UNK4 145 aa5.11□□□□□ -1.59
LIMA1-213ENST00000552720 ANK2Q01484 3957 aa5.1□□□□□ -1.59
LIMA1-213ENST00000552720 CXCL5P42830 114 aa5.1□□□□□ -1.59
LIMA1-213ENST00000552720 DAD1P61803 113 aa5.1□□□□□ -1.59
LIMA1-213ENST00000552720 LYRM9A8MSI8 78 aa5.09□□□□□ -1.59
LIMA1-213ENST00000552720 C6orf99Q4VX62 202 aa5.09□□□□□ -1.59
LIMA1-213ENST00000552720 UNQ6190/PRO20217Q6UXQ8 127 aa5.09□□□□□ -1.59
LIMA1-213ENST00000552720 SMIM20Q8N5G0 67 aa5.09□□□□□ -1.59
LIMA1-213ENST00000552720 Q8N814 137 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms