RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MRAPQ8TCY5 172 aa9.88□□□□□ -0.83
VPS33A-209ENST00000544349 CLEC2BQ92478 149 aa9.88□□□□□ -0.83
VPS33A-209ENST00000544349 IGKV3OR2-268A0A0C4DH90 116 aa9.87□□□□□ -0.83
VPS33A-209ENST00000544349 IFITM1P13164 125 aa9.87□□□□□ -0.83
VPS33A-209ENST00000544349 C11orf45Q8TAV5 145 aa9.86□□□□□ -0.83
VPS33A-209ENST00000544349 NOTCH1P46531 2555 aa9.85□□□□□ -0.83
VPS33A-209ENST00000544349 A0A1B0GUV1 79 aa9.85□□□□□ -0.83
VPS33A-209ENST00000544349 TMEM262E9PQX1 116 aa9.85□□□□□ -0.83
VPS33A-209ENST00000544349 H3BNG1 76 aa9.85□□□□□ -0.83
VPS33A-209ENST00000544349 NANOS2P60321 138 aaKnown RBP9.85□□□□□ -0.83
VPS33A-209ENST00000544349 MEIG1Q5JSS6 88 aa9.85□□□□□ -0.83
VPS33A-209ENST00000544349 M0QXV9 152 aa9.84□□□□□ -0.83
VPS33A-209ENST00000544349 CIRBPQ14011 172 aaKnown RBP9.84□□□□□ -0.83
VPS33A-209ENST00000544349 NTN5Q8WTR8 489 aaPredicted RBP9.83□□□□□ -0.84
VPS33A-209ENST00000544349 TRBV10-2A0A0K0K1G8 114 aa9.82□□□□□ -0.84
VPS33A-209ENST00000544349 XGP55808 180 aa9.82□□□□□ -0.84
VPS33A-209ENST00000544349 LELP1Q5T871 98 aa9.82□□□□□ -0.84
VPS33A-209ENST00000544349 MT-ATP8P03928 68 aa9.82□□□□□ -0.84
VPS33A-209ENST00000544349 DEFB131BA0A096LNP1 70 aa9.81□□□□□ -0.84
VPS33A-209ENST00000544349 LST1O00453 97 aa9.81□□□□□ -0.84
VPS33A-209ENST00000544349 COX7B2Q8TF08 81 aa9.81□□□□□ -0.84
VPS33A-209ENST00000544349 TEX49A0A1B0GTD5 131 aa9.8□□□□□ -0.84
VPS33A-209ENST00000544349 LYPD5Q6UWN5 251 aa9.8□□□□□ -0.84
VPS33A-209ENST00000544349 TOMM7Q9P0U1 55 aa9.8□□□□□ -0.84
VPS33A-209ENST00000544349 MGAM2Q2M2H8 2515 aa9.8□□□□□ -0.84
VPS33A-209ENST00000544349 LINC01600Q96MT4 127 aa9.8□□□□□ -0.84
VPS33A-209ENST00000544349 NBEAL1Q6ZS30 2694 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 TENM3Q9P273 2699 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 IGHV3OR16-9A0A0B4J2B5 98 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 COX6CP09669 75 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 SCGB1A1P11684 91 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 HERV-K104P63124 156 aa9.79□□□□□ -0.84
VPS33A-209ENST00000544349 LINC00959A0A1B0GUT2 108 aa9.78□□□□□ -0.84
VPS33A-209ENST00000544349 C2orf82Q6UX34 121 aa9.78□□□□□ -0.84
VPS33A-209ENST00000544349 C5orf38Q86SI9 138 aa9.77□□□□□ -0.84
VPS33A-209ENST00000544349 Q8N3U1 123 aa9.77□□□□□ -0.84
VPS33A-209ENST00000544349 MIR7-3HGQ8N6C7 128 aa9.77□□□□□ -0.85
VPS33A-209ENST00000544349 CLPSL2Q6UWE3 100 aa9.76□□□□□ -0.85
VPS33A-209ENST00000544349 UBE2WQ96B02 151 aa9.76□□□□□ -0.85
VPS33A-209ENST00000544349 TRAV10A0A0B4J240 114 aa9.76□□□□□ -0.85
VPS33A-209ENST00000544349 A0A087WZ39 114 aa9.75□□□□□ -0.85
VPS33A-209ENST00000544349 H3BT86 120 aa9.75□□□□□ -0.85
VPS33A-209ENST00000544349 ANGP03950 147 aaKnown RBP9.75□□□□□ -0.85
VPS33A-209ENST00000544349 SS18Q15532 418 aa9.75□□□□□ -0.85
VPS33A-209ENST00000544349 LINC00269Q8N2A0 174 aa9.75□□□□□ -0.85
VPS33A-209ENST00000544349 COX7A2LO14548 114 aa9.74□□□□□ -0.85
VPS33A-209ENST00000544349 B9D2Q9BPU9 175 aa9.74□□□□□ -0.85
VPS33A-209ENST00000544349 LINC00337Q8N6G1 96 aa9.74□□□□□ -0.85
VPS33A-209ENST00000544349 COPS9Q8WXC6 57 aa9.74□□□□□ -0.85
VPS33A-209ENST00000544349 IGKV2-28A0A075B6P5 120 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 IGKV2D-28P01615 120 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 XCL1P47992 114 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 REG3AQ06141 175 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 ESRGQ1W209 222 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 HUWE1Q7Z6Z7 4374 aaKnown RBP9.73□□□□□ -0.85
VPS33A-209ENST00000544349 FAM218AQ96MZ4 157 aa9.73□□□□□ -0.85
VPS33A-209ENST00000544349 LINC00158P58513 81 aa9.71□□□□□ -0.85
VPS33A-209ENST00000544349 PPDPFQ9H3Y8 114 aa9.71□□□□□ -0.85
VPS33A-209ENST00000544349 WFDC10BQ8IUB3 73 aa9.71□□□□□ -0.86
VPS33A-209ENST00000544349 SND1-IT1Q9HBX3 110 aa9.71□□□□□ -0.86
VPS33A-209ENST00000544349 PFN2P35080 140 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 CCL18P55774 89 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 TRAV8-4A0A0B4J246 113 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 CRPP02741 224 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 KLK12Q9UKR0 248 aa9.7□□□□□ -0.86
VPS33A-209ENST00000544349 CHCHD10Q8WYQ3 142 aaPredicted RBP9.69□□□□□ -0.86
VPS33A-209ENST00000544349 PRR34Q9NV39 138 aa9.69□□□□□ -0.86
VPS33A-209ENST00000544349 CD164L2Q6UWJ8 174 aa9.68□□□□□ -0.86
VPS33A-209ENST00000544349 IGLV10-54A0A075B6I4 117 aa9.68□□□□□ -0.86
VPS33A-209ENST00000544349 IBA57-AS1B1ANH7 110 aa9.68□□□□□ -0.86
VPS33A-209ENST00000544349 ENHOQ6UWT2 76 aa9.67□□□□□ -0.86
VPS33A-209ENST00000544349 LINC01561Q8N1V8 128 aa9.67□□□□□ -0.86
VPS33A-209ENST00000544349 TRAV13-2A0A0B4J235 113 aa9.67□□□□□ -0.86
VPS33A-209ENST00000544349 RPL28P46779 137 aaKnown RBP9.66□□□□□ -0.86
VPS33A-209ENST00000544349 C22orf24Q9Y442 160 aa9.66□□□□□ -0.86
VPS33A-209ENST00000544349 TRACP01848 142 aa9.65□□□□□ -0.86
VPS33A-209ENST00000544349 C6orf226Q5I0X4 101 aa9.65□□□□□ -0.86
VPS33A-209ENST00000544349 SMIM11BQ8TCY0 68 aa9.65□□□□□ -0.86
VPS33A-209ENST00000544349 CKS1BP61024 79 aa9.64□□□□□ -0.87
VPS33A-209ENST00000544349 Q8IZM0 81 aa9.64□□□□□ -0.87
VPS33A-209ENST00000544349 Q9HAA7 133 aa9.64□□□□□ -0.87
VPS33A-209ENST00000544349 NHLRC4P0CG21 123 aaPredicted RBP9.64□□□□□ -0.87
VPS33A-209ENST00000544349 LINC01556Q5JQF7 62 aa9.64□□□□□ -0.87
VPS33A-209ENST00000544349 A0A087WYN8 130 aa9.63□□□□□ -0.87
VPS33A-209ENST00000544349 DNAH9Q9NYC9 4486 aa9.63□□□□□ -0.87
VPS33A-209ENST00000544349 TTC32Q5I0X7 151 aa9.62□□□□□ -0.87
VPS33A-209ENST00000544349 LINC00588Q9Y4M8 146 aa9.62□□□□□ -0.87
VPS33A-209ENST00000544349 KIAA0087Q14695 138 aa9.62□□□□□ -0.87
VPS33A-209ENST00000544349 A0A1B0GV72 72 aa9.61□□□□□ -0.87
VPS33A-209ENST00000544349 MALP21145 153 aa9.61□□□□□ -0.87
VPS33A-209ENST00000544349 SNCGO76070 127 aa9.61□□□□□ -0.87
VPS33A-209ENST00000544349 BAALC-AS2P0C853 105 aa9.61□□□□□ -0.87
VPS33A-209ENST00000544349 DNAH10OSP0CZ25 163 aa9.61□□□□□ -0.87
VPS33A-209ENST00000544349 FAM240AA0A1B0GVK7 77 aa9.59□□□□□ -0.87
VPS33A-209ENST00000544349 C9orf116Q5BN46 136 aaPredicted RBP9.59□□□□□ -0.87
VPS33A-209ENST00000544349 OR13C6PQ8NH95 151 aa9.58□□□□□ -0.88
VPS33A-209ENST00000544349 PRR3P79522 188 aaKnown RBP9.58□□□□□ -0.88
VPS33A-209ENST00000544349 KLK5Q9Y337 293 aaPredicted RBP9.58□□□□□ -0.88
VPS33A-209ENST00000544349 KRTAP26-1Q6PEX3 210 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms