RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HERV-K104P63124 156 aa9.89□□□□□ -0.83
CLIP1-216ENST00000541410 MIR7-3HGQ8N6C7 128 aa9.89□□□□□ -0.83
CLIP1-216ENST00000541410 LINC00158P58513 81 aa9.89□□□□□ -0.83
CLIP1-216ENST00000541410 SH2D6Q7Z4S9 175 aa9.88□□□□□ -0.83
CLIP1-216ENST00000541410 IFITM1P13164 125 aa9.88□□□□□ -0.83
CLIP1-216ENST00000541410 CD164L2Q6UWJ8 174 aa9.88□□□□□ -0.83
CLIP1-216ENST00000541410 LINC00526Q96FQ7 95 aa9.88□□□□□ -0.83
CLIP1-216ENST00000541410 MALP21145 153 aa9.87□□□□□ -0.83
CLIP1-216ENST00000541410 ESRGQ1W209 222 aa9.87□□□□□ -0.83
CLIP1-216ENST00000541410 COX7A2LO14548 114 aa9.87□□□□□ -0.83
CLIP1-216ENST00000541410 RPL13AP40429 203 aaKnown RBP9.87□□□□□ -0.83
CLIP1-216ENST00000541410 OCIAD2Q56VL3 154 aa9.87□□□□□ -0.83
CLIP1-216ENST00000541410 TRIAP1O43715 76 aa9.86□□□□□ -0.83
CLIP1-216ENST00000541410 ENHOQ6UWT2 76 aa9.86□□□□□ -0.83
CLIP1-216ENST00000541410 UBE2WQ96B02 151 aa9.86□□□□□ -0.83
CLIP1-216ENST00000541410 GAGE12HA6NDE8 117 aa9.86□□□□□ -0.83
CLIP1-216ENST00000541410 RNF151Q2KHN1 245 aa9.86□□□□□ -0.83
CLIP1-216ENST00000541410 FOXI1Q12951 378 aa9.85□□□□□ -0.83
CLIP1-216ENST00000541410 SPATA25Q9BR10 227 aa9.85□□□□□ -0.83
CLIP1-216ENST00000541410 PRO0461Q9UI25 63 aa9.85□□□□□ -0.83
CLIP1-216ENST00000541410 ETDBQ3ZM63 59 aa9.84□□□□□ -0.83
CLIP1-216ENST00000541410 COL7A1Q02388 2944 aa9.84□□□□□ -0.83
CLIP1-216ENST00000541410 CKS1BP61024 79 aa9.83□□□□□ -0.84
CLIP1-216ENST00000541410 C9orf116Q5BN46 136 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-216ENST00000541410 C6orf223Q8N319 242 aa9.83□□□□□ -0.84
CLIP1-216ENST00000541410 Q8IZM0 81 aa9.83□□□□□ -0.84
CLIP1-216ENST00000541410 TM2D3Q9BRN9 247 aa9.83□□□□□ -0.84
CLIP1-216ENST00000541410 F8W1H4 67 aa9.82□□□□□ -0.84
CLIP1-216ENST00000541410 H3BNG1 76 aa9.82□□□□□ -0.84
CLIP1-216ENST00000541410 SMCPP49901 116 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-216ENST00000541410 KIAA0087Q14695 138 aa9.82□□□□□ -0.84
CLIP1-216ENST00000541410 PRR34Q9NV39 138 aa9.82□□□□□ -0.84
CLIP1-216ENST00000541410 HUWE1Q7Z6Z7 4374 aaKnown RBP9.82□□□□□ -0.84
CLIP1-216ENST00000541410 CRPP02741 224 aa9.82□□□□□ -0.84
CLIP1-216ENST00000541410 LYRM7Q5U5X0 104 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 CLEC2BQ92478 149 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 IBA57-AS1B1ANH7 110 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 CCL18P55774 89 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 CFAP161Q6P656 301 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 SND1-IT1Q9HBX3 110 aa9.81□□□□□ -0.84
CLIP1-216ENST00000541410 TRBV30A0A0K0K1B3 111 aa9.8□□□□□ -0.84
CLIP1-216ENST00000541410 C10orf25Q5T742 122 aa9.79□□□□□ -0.84
CLIP1-216ENST00000541410 TRBV20-1A0A075B6N2 111 aa9.79□□□□□ -0.84
CLIP1-216ENST00000541410 IGKV2-28A0A075B6P5 120 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 C9JAW5 83 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 IGKV2D-28P01615 120 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 LINC00337Q8N6G1 96 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 SPAG11BQ08648 103 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 UNQ6190/PRO20217Q6UXQ8 127 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 COPS9Q8WXC6 57 aa9.78□□□□□ -0.84
CLIP1-216ENST00000541410 STAB2Q8WWQ8 2551 aa9.77□□□□□ -0.85
CLIP1-216ENST00000541410 TRAV10A0A0B4J240 114 aa9.76□□□□□ -0.85
CLIP1-216ENST00000541410 K7ERU9 68 aa9.76□□□□□ -0.85
CLIP1-216ENST00000541410 PRR3P79522 188 aaKnown RBP9.76□□□□□ -0.85
CLIP1-216ENST00000541410 LINC01561Q8N1V8 128 aa9.76□□□□□ -0.85
CLIP1-216ENST00000541410 HIGD2BQ4VC39 106 aa9.75□□□□□ -0.85
CLIP1-216ENST00000541410 Q9HAA7 133 aa9.75□□□□□ -0.85
CLIP1-216ENST00000541410 COX6CP09669 75 aa9.74□□□□□ -0.85
CLIP1-216ENST00000541410 ATXN8Q156A1 80 aa9.74□□□□□ -0.85
CLIP1-216ENST00000541410 KLK5Q9Y337 293 aaPredicted RBP9.74□□□□□ -0.85
CLIP1-216ENST00000541410 SLC25A20O43772 301 aa9.73□□□□□ -0.85
CLIP1-216ENST00000541410 LINC01620Q4KN68 170 aa9.73□□□□□ -0.85
CLIP1-216ENST00000541410 VPS25Q9BRG1 176 aa9.73□□□□□ -0.85
CLIP1-216ENST00000541410 LINC00588Q9Y4M8 146 aa9.73□□□□□ -0.85
CLIP1-216ENST00000541410 IGKV2D-24A0A075B6R9 120 aa9.72□□□□□ -0.85
CLIP1-216ENST00000541410 TRAV8-4A0A0B4J246 113 aa9.72□□□□□ -0.85
CLIP1-216ENST00000541410 OR13C6PQ8NH95 151 aa9.72□□□□□ -0.85
CLIP1-216ENST00000541410 CXCL5P42830 114 aa9.72□□□□□ -0.85
CLIP1-216ENST00000541410 LYSTQ99698 3801 aa9.71□□□□□ -0.85
CLIP1-216ENST00000541410 KRTAP26-1Q6PEX3 210 aa9.71□□□□□ -0.85
CLIP1-216ENST00000541410 LINC01556Q5JQF7 62 aa9.71□□□□□ -0.86
CLIP1-216ENST00000541410 TRAV13-2A0A0B4J235 113 aa9.7□□□□□ -0.86
CLIP1-216ENST00000541410 ANKRD29Q8N6D5 301 aa9.7□□□□□ -0.86
CLIP1-216ENST00000541410 Q8NDZ9 215 aa9.7□□□□□ -0.86
CLIP1-216ENST00000541410 C1orf43Q9BWL3 253 aa9.7□□□□□ -0.86
CLIP1-216ENST00000541410 SMIM11BQ8TCY0 68 aa9.69□□□□□ -0.86
CLIP1-216ENST00000541410 FAM218AQ96MZ4 157 aa9.69□□□□□ -0.86
CLIP1-216ENST00000541410 LST1O00453 97 aa9.68□□□□□ -0.86
CLIP1-216ENST00000541410 C15orf53Q8NAA6 179 aa9.68□□□□□ -0.86
CLIP1-216ENST00000541410 C6orf48Q9UBA6 75 aa9.68□□□□□ -0.86
CLIP1-216ENST00000541410 ZNF561-AS1K7EIQ3 104 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 NTN5Q8WTR8 489 aaPredicted RBP9.67□□□□□ -0.86
CLIP1-216ENST00000541410 CARD19Q96LW7 228 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 PPDPFQ9H3Y8 114 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 NCR3O14931 201 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 COX17Q14061 63 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 TEN1Q86WV5 123 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 C15orf56Q8N910 161 aa9.67□□□□□ -0.86
CLIP1-216ENST00000541410 DNAH10OSP0CZ25 163 aa9.66□□□□□ -0.86
CLIP1-216ENST00000541410 XAGE1AQ9HD64 81 aa9.66□□□□□ -0.86
CLIP1-216ENST00000541410 CAMK2N2Q96S95 79 aa9.66□□□□□ -0.86
CLIP1-216ENST00000541410 DNAH9Q9NYC9 4486 aa9.66□□□□□ -0.86
CLIP1-216ENST00000541410 TRBV10-2A0A0K0K1G8 114 aa9.65□□□□□ -0.87
CLIP1-216ENST00000541410 RPL28P46779 137 aaKnown RBP9.65□□□□□ -0.87
CLIP1-216ENST00000541410 CASC10Q5T4H9 136 aa9.64□□□□□ -0.87
CLIP1-216ENST00000541410 Q6ZRU5 148 aa9.64□□□□□ -0.87
CLIP1-216ENST00000541410 TENM2Q9NT68 2774 aa9.64□□□□□ -0.87
CLIP1-216ENST00000541410 TEX49A0A1B0GTD5 131 aa9.63□□□□□ -0.87
CLIP1-216ENST00000541410 A0A087WYN8 130 aa9.61□□□□□ -0.87
CLIP1-216ENST00000541410 PPDPFLQ8WWR9 84 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms