RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	CDKN2A-AS1	Q9UH64	79 aa		7.94	□□□□□ -1.14
SEMA4D-223	ENST00000540475		M0QXV9	152 aa		7.93	□□□□□ -1.14
SEMA4D-223	ENST00000540475	C6orf226	Q5I0X4	101 aa		7.93	□□□□□ -1.14
SEMA4D-223	ENST00000540475	SEC11C	Q9BY50	192 aa		7.93	□□□□□ -1.14
SEMA4D-223	ENST00000540475	GNB1L	Q9BYB4	327 aa		7.93	□□□□□ -1.14
SEMA4D-223	ENST00000540475	IGLV5-45	A0A087WSX0	123 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	LINC01549	A6NIU2	74 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	PRSS2	P07478	247 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	KRTAP1-4	P0C5Y4	121 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	CKS1B	P61024	79 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	KIAA1644	Q3SXP7	199 aa		7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	ALKBH7	Q9BT30	221 aa	Predicted RBP	7.92	□□□□□ -1.14
SEMA4D-223	ENST00000540475	TINCR	A0A1B0GVN0	87 aa		7.9	□□□□□ -1.14
SEMA4D-223	ENST00000540475		F8VRH5	84 aa		7.9	□□□□□ -1.14
SEMA4D-223	ENST00000540475	C10orf91	Q5T1B1	145 aa		7.9	□□□□□ -1.14
SEMA4D-223	ENST00000540475	GEMIN7	Q9H840	131 aa	Known RBP	7.9	□□□□□ -1.14
SEMA4D-223	ENST00000540475	TOMM7	Q9P0U1	55 aa		7.9	□□□□□ -1.14
SEMA4D-223	ENST00000540475	CXCL5	P42830	114 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	COX19	Q49B96	90 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	PDZD11	Q5EBL8	140 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	PRR26	Q8N8Z3	221 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	SCGB3A1	Q96QR1	104 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	TP73-AS1	Q9UF72	201 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	C22orf24	Q9Y442	160 aa		7.89	□□□□□ -1.15
SEMA4D-223	ENST00000540475	IGLV1-50	A0A075B6I6	118 aa		7.88	□□□□□ -1.15
SEMA4D-223	ENST00000540475	SMIM1	B2RUZ4	78 aa		7.88	□□□□□ -1.15
SEMA4D-223	ENST00000540475	UBE2B	P63146	152 aa		7.88	□□□□□ -1.15
SEMA4D-223	ENST00000540475	CST9L	Q9H4G1	147 aa		7.88	□□□□□ -1.15
SEMA4D-223	ENST00000540475	NUPR1	O60356	82 aa		7.87	□□□□□ -1.15
SEMA4D-223	ENST00000540475	S100P	P25815	95 aa		7.87	□□□□□ -1.15
SEMA4D-223	ENST00000540475	ZNF861P	O60384	105 aa		7.86	□□□□□ -1.15
SEMA4D-223	ENST00000540475	LBH	Q53QV2	105 aa	Predicted RBP	7.86	□□□□□ -1.15
SEMA4D-223	ENST00000540475	LINC00469	Q8N7U9	141 aa		7.86	□□□□□ -1.15
SEMA4D-223	ENST00000540475	XAGE1A	Q9HD64	81 aa		7.86	□□□□□ -1.15
SEMA4D-223	ENST00000540475	CARHSP1	Q9Y2V2	147 aa	Known RBP	7.86	□□□□□ -1.15
SEMA4D-223	ENST00000540475	PMVK	Q15126	192 aa		7.85	□□□□□ -1.15
SEMA4D-223	ENST00000540475	COX7B2	Q8TF08	81 aa		7.85	□□□□□ -1.15
SEMA4D-223	ENST00000540475	RHEB	Q15382	184 aa		7.84	□□□□□ -1.15
SEMA4D-223	ENST00000540475	MRPL18	Q9H0U6	180 aa	Known RBP	7.84	□□□□□ -1.15
SEMA4D-223	ENST00000540475	IGLV5-37	A0A075B6J1	123 aa		7.83	□□□□□ -1.16
SEMA4D-223	ENST00000540475	MRPL55	Q7Z7F7	128 aa	Known RBP	7.83	□□□□□ -1.16
SEMA4D-223	ENST00000540475		A0A096LNJ9	63 aa		7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	RPL13A	P40429	203 aa	Known RBP	7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	FABP9	Q0Z7S8	132 aa		7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	FA2H	Q7L5A8	372 aa		7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	COMMD7	Q86VX2	200 aa		7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	URB1-AS1	Q96HZ7	61 aa		7.82	□□□□□ -1.16
SEMA4D-223	ENST00000540475	IGLV5-39	A0A0G2JS06	123 aa		7.81	□□□□□ -1.16
SEMA4D-223	ENST00000540475	IGLC3	P0DOY3	106 aa		7.81	□□□□□ -1.16
SEMA4D-223	ENST00000540475	LINC00167	Q96N53	147 aa		7.81	□□□□□ -1.16
SEMA4D-223	ENST00000540475	SMCO4	Q9NRQ5	59 aa		7.81	□□□□□ -1.16
SEMA4D-223	ENST00000540475	BCE1	O60756	84 aa		7.8	□□□□□ -1.16
SEMA4D-223	ENST00000540475	SPINK8	P0C7L1	97 aa		7.8	□□□□□ -1.16
SEMA4D-223	ENST00000540475		H3BRM9	83 aa		7.79	□□□□□ -1.16
SEMA4D-223	ENST00000540475	LINC00614	P0C842	121 aa		7.79	□□□□□ -1.16
SEMA4D-223	ENST00000540475	C18orf32	Q8TCD1	76 aa		7.79	□□□□□ -1.16
SEMA4D-223	ENST00000540475	RPS10P5	Q9NQ39	176 aa		7.79	□□□□□ -1.16
SEMA4D-223	ENST00000540475	KRTAP13-1	Q8IUC0	172 aa		7.78	□□□□□ -1.16
SEMA4D-223	ENST00000540475	RPL28	P46779	137 aa	Known RBP	7.77	□□□□□ -1.17
SEMA4D-223	ENST00000540475	ATP5L	O75964	103 aa		7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	HBD	P02042	147 aa		7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	ZNF22	P17026	224 aa	Predicted RBP	7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	RAB5B	P61020	215 aa		7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	COX17	Q14061	63 aa		7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	TRAPPC1	Q9Y5R8	145 aa		7.76	□□□□□ -1.17
SEMA4D-223	ENST00000540475	RPL37AP8	A6NKH3	93 aa		7.75	□□□□□ -1.17
SEMA4D-223	ENST00000540475		A0A087X002	238 aa		7.74	□□□□□ -1.17
SEMA4D-223	ENST00000540475	MUC2	Q02817	5179 aa		7.73	□□□□□ -1.17
SEMA4D-223	ENST00000540475	SFTA2	Q6UW10	78 aa		7.73	□□□□□ -1.17
SEMA4D-223	ENST00000540475	ERG28	Q9UKR5	140 aa		7.73	□□□□□ -1.17
SEMA4D-223	ENST00000540475	C11orf86	A6NJI1	115 aa		7.72	□□□□□ -1.17
SEMA4D-223	ENST00000540475	VPREB1	P12018	145 aa		7.72	□□□□□ -1.17
SEMA4D-223	ENST00000540475	NKAPP1	Q8N9T2	125 aa		7.72	□□□□□ -1.17
SEMA4D-223	ENST00000540475	YPEL4	Q96NS1	127 aa		7.72	□□□□□ -1.17
SEMA4D-223	ENST00000540475	SND1-IT1	Q9HBX3	110 aa		7.72	□□□□□ -1.17
SEMA4D-223	ENST00000540475	GAGE10	A6NGK3	116 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	SNAPIN	O95295	136 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	CRYGA	P11844	174 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	PFN2	P35080	140 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	NDUFA6	P56556	154 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	PMCHL1	Q16048	86 aa		7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	ZNF625	Q96I27	306 aa	Predicted RBP	7.71	□□□□□ -1.18
SEMA4D-223	ENST00000540475	APOC3	P02656	99 aa		7.7	□□□□□ -1.18
SEMA4D-223	ENST00000540475	FAM229B	Q4G0N7	80 aa		7.7	□□□□□ -1.18
SEMA4D-223	ENST00000540475	BAGE3	Q86Y29	109 aa		7.7	□□□□□ -1.18
SEMA4D-223	ENST00000540475	SVBP	Q8N300	66 aa		7.7	□□□□□ -1.18
SEMA4D-223	ENST00000540475	TRAV12-1	A0A0B4J245	112 aa		7.69	□□□□□ -1.18
SEMA4D-223	ENST00000540475	SCO1	O75880	301 aa		7.69	□□□□□ -1.18
SEMA4D-223	ENST00000540475	RPL24	P83731	157 aa	Known RBP	7.69	□□□□□ -1.18
SEMA4D-223	ENST00000540475		Q8NDZ9	215 aa		7.69	□□□□□ -1.18
SEMA4D-223	ENST00000540475	IGKV2-28	A0A075B6P5	120 aa		7.68	□□□□□ -1.18
SEMA4D-223	ENST00000540475	IGKV2D-28	P01615	120 aa		7.68	□□□□□ -1.18
SEMA4D-223	ENST00000540475	KRTAP13-2	Q52LG2	175 aa		7.68	□□□□□ -1.18
SEMA4D-223	ENST00000540475	TYMSOS	Q8TAI1	123 aa		7.68	□□□□□ -1.18
SEMA4D-223	ENST00000540475	CHCHD1	Q96BP2	118 aa	Known RBP	7.68	□□□□□ -1.18
SEMA4D-223	ENST00000540475	MUC17	Q685J3	4493 aa		7.67	□□□□□ -1.18
SEMA4D-223	ENST00000540475	TMEM223	A0PJW6	202 aa		7.67	□□□□□ -1.18
SEMA4D-223	ENST00000540475	UBE2A	P49459	152 aa		7.67	□□□□□ -1.18
SEMA4D-223	ENST00000540475	PRR4	Q16378	134 aa		7.67	□□□□□ -1.18
SEMA4D-223	ENST00000540475	NDUFA5	Q16718	116 aa		7.67	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms