RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 KIAA1644Q3SXP7 199 aa10.74□□□□□ -0.69
PCF11-206ENST00000533018 XAGE1AQ9HD64 81 aa10.74□□□□□ -0.69
PCF11-206ENST00000533018 CDKN2A-AS1Q9UH64 79 aa10.74□□□□□ -0.69
PCF11-206ENST00000533018 FAM19A3Q7Z5A8 133 aa10.73□□□□□ -0.69
PCF11-206ENST00000533018 TIMM17AQ99595 171 aa10.72□□□□□ -0.69
PCF11-206ENST00000533018 C22orf24Q9Y442 160 aa10.72□□□□□ -0.69
PCF11-206ENST00000533018 F8VRH5 84 aa10.71□□□□□ -0.69
PCF11-206ENST00000533018 KRTAP1-4P0C5Y4 121 aa10.71□□□□□ -0.69
PCF11-206ENST00000533018 LBHQ53QV2 105 aaPredicted RBP10.71□□□□□ -0.69
PCF11-206ENST00000533018 TOMM6Q96B49 74 aa10.71□□□□□ -0.69
PCF11-206ENST00000533018 SCGB3A1Q96QR1 104 aa10.71□□□□□ -0.69
PCF11-206ENST00000533018 ZNF861PO60384 105 aa10.69□□□□□ -0.7
PCF11-206ENST00000533018 RPL13AP40429 203 aaKnown RBP10.69□□□□□ -0.7
PCF11-206ENST00000533018 ERASQ7Z444 233 aa10.69□□□□□ -0.7
PCF11-206ENST00000533018 NUPR1O60356 82 aa10.68□□□□□ -0.7
PCF11-206ENST00000533018 CXCL5P42830 114 aa10.68□□□□□ -0.7
PCF11-206ENST00000533018 ADCYAP1P18509 176 aa10.67□□□□□ -0.7
PCF11-206ENST00000533018 CLLU1Q5K131 121 aa10.66□□□□□ -0.7
PCF11-206ENST00000533018 MRPL55Q7Z7F7 128 aaKnown RBP10.66□□□□□ -0.7
PCF11-206ENST00000533018 COX7B2Q8TF08 81 aa10.66□□□□□ -0.7
PCF11-206ENST00000533018 SMIM1B2RUZ4 78 aa10.65□□□□□ -0.7
PCF11-206ENST00000533018 PRR4Q16378 134 aa10.65□□□□□ -0.7
PCF11-206ENST00000533018 TINCRA0A1B0GVN0 87 aa10.64□□□□□ -0.71
PCF11-206ENST00000533018 S100PP25815 95 aa10.64□□□□□ -0.71
PCF11-206ENST00000533018 RAB5BP61020 215 aa10.64□□□□□ -0.71
PCF11-206ENST00000533018 PDZD11Q5EBL8 140 aa10.64□□□□□ -0.71
PCF11-206ENST00000533018 CARHSP1Q9Y2V2 147 aaKnown RBP10.64□□□□□ -0.71
PCF11-206ENST00000533018 TRAV9-1A0A075B6T8 112 aa10.63□□□□□ -0.71
PCF11-206ENST00000533018 RPL37AP8A6NKH3 93 aa10.63□□□□□ -0.71
PCF11-206ENST00000533018 TP73-AS1Q9UF72 201 aa10.63□□□□□ -0.71
PCF11-206ENST00000533018 TMEM218A2RU14 115 aa10.62□□□□□ -0.71
PCF11-206ENST00000533018 LINC01549A6NIU2 74 aa10.62□□□□□ -0.71
PCF11-206ENST00000533018 SPINK8P0C7L1 97 aa10.62□□□□□ -0.71
PCF11-206ENST00000533018 RPL28P46779 137 aaKnown RBP10.62□□□□□ -0.71
PCF11-206ENST00000533018 UQCC3Q6UW78 93 aa10.62□□□□□ -0.71
PCF11-206ENST00000533018 GAGE10A6NGK3 116 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 FA2HQ7L5A8 372 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 LINC00167Q96N53 147 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 GNB1LQ9BYB4 327 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 CST9LQ9H4G1 147 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 SMCO4Q9NRQ5 59 aa10.61□□□□□ -0.71
PCF11-206ENST00000533018 BCE1O60756 84 aa10.6□□□□□ -0.71
PCF11-206ENST00000533018 IGLV5-45A0A087WSX0 123 aa10.59□□□□□ -0.71
PCF11-206ENST00000533018 TSPAN13O95857 204 aa10.59□□□□□ -0.71
PCF11-206ENST00000533018 FABP9Q0Z7S8 132 aa10.59□□□□□ -0.71
PCF11-206ENST00000533018 PMVKQ15126 192 aa10.59□□□□□ -0.71
PCF11-206ENST00000533018 NKAPP1Q8N9T2 125 aa10.59□□□□□ -0.71
PCF11-206ENST00000533018 LINC01546A6NGU7 62 aa10.58□□□□□ -0.72
PCF11-206ENST00000533018 H3BRM9 83 aa10.58□□□□□ -0.72
PCF11-206ENST00000533018 MRPL18Q9H0U6 180 aaKnown RBP10.58□□□□□ -0.72
PCF11-206ENST00000533018 ATP5LO75964 103 aa10.57□□□□□ -0.72
PCF11-206ENST00000533018 NDUFA6P56556 154 aa10.57□□□□□ -0.72
PCF11-206ENST00000533018 COX19Q49B96 90 aa10.57□□□□□ -0.72
PCF11-206ENST00000533018 SEC11CQ9BY50 192 aa10.57□□□□□ -0.72
PCF11-206ENST00000533018 MUC2Q02817 5179 aa10.56□□□□□ -0.72
PCF11-206ENST00000533018 A0A087X002 238 aa10.55□□□□□ -0.72
PCF11-206ENST00000533018 CRYGAP11844 174 aa10.55□□□□□ -0.72
PCF11-206ENST00000533018 PFN2P35080 140 aa10.55□□□□□ -0.72
PCF11-206ENST00000533018 UBE2AP49459 152 aa10.55□□□□□ -0.72
PCF11-206ENST00000533018 TYMSOSQ8TAI1 123 aa10.55□□□□□ -0.72
PCF11-206ENST00000533018 IGKV2-28A0A075B6P5 120 aa10.52□□□□□ -0.73
PCF11-206ENST00000533018 IGKV2D-28P01615 120 aa10.52□□□□□ -0.73
PCF11-206ENST00000533018 RPS10P5Q9NQ39 176 aa10.52□□□□□ -0.73
PCF11-206ENST00000533018 ANAPC11Q9NYG5 84 aa10.52□□□□□ -0.73
PCF11-206ENST00000533018 IGLV5-37A0A075B6J1 123 aa10.51□□□□□ -0.73
PCF11-206ENST00000533018 SCO1O75880 301 aa10.51□□□□□ -0.73
PCF11-206ENST00000533018 IFITM2Q01629 132 aa10.51□□□□□ -0.73
PCF11-206ENST00000533018 COMMD7Q86VX2 200 aa10.51□□□□□ -0.73
PCF11-206ENST00000533018 IGLC3P0DOY3 106 aa10.5□□□□□ -0.73
PCF11-206ENST00000533018 RHEBQ15382 184 aa10.48□□□□□ -0.73
PCF11-206ENST00000533018 ZNF625Q96I27 306 aaPredicted RBP10.48□□□□□ -0.73
PCF11-206ENST00000533018 ERG28Q9UKR5 140 aa10.48□□□□□ -0.73
PCF11-206ENST00000533018 TRAPPC1Q9Y5R8 145 aa10.48□□□□□ -0.73
PCF11-206ENST00000533018 IGLV5-39A0A0G2JS06 123 aa10.47□□□□□ -0.73
PCF11-206ENST00000533018 LINC00614P0C842 121 aa10.47□□□□□ -0.73
PCF11-206ENST00000533018 ZNF22P17026 224 aaPredicted RBP10.47□□□□□ -0.73
PCF11-206ENST00000533018 PMCHL1Q16048 86 aa10.47□□□□□ -0.73
PCF11-206ENST00000533018 A0A096LNJ9 63 aa10.46□□□□□ -0.73
PCF11-206ENST00000533018 HBDP02042 147 aa10.46□□□□□ -0.73
PCF11-206ENST00000533018 FAM19A1Q7Z5A9 133 aa10.46□□□□□ -0.73
PCF11-206ENST00000533018 KRTAP13-1Q8IUC0 172 aa10.46□□□□□ -0.73
PCF11-206ENST00000533018 SND1-IT1Q9HBX3 110 aa10.46□□□□□ -0.73
PCF11-206ENST00000533018 PRLHP81277 87 aa10.45□□□□□ -0.74
PCF11-206ENST00000533018 RPL24P83731 157 aaKnown RBP10.45□□□□□ -0.74
PCF11-206ENST00000533018 TMEM170BQ5T4T1 132 aa10.45□□□□□ -0.74
PCF11-206ENST00000533018 C18orf32Q8TCD1 76 aa10.45□□□□□ -0.74
PCF11-206ENST00000533018 VPREB1P12018 145 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 COX17Q14061 63 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 KRTAP13-2Q52LG2 175 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 C10orf91Q5T1B1 145 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 BAGE3Q86Y29 109 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 URB1-AS1Q96HZ7 61 aa10.44□□□□□ -0.74
PCF11-206ENST00000533018 TMEM238C9JI98 176 aa10.43□□□□□ -0.74
PCF11-206ENST00000533018 TMEM126AQ9H061 195 aa10.43□□□□□ -0.74
PCF11-206ENST00000533018 IGKV2D-26A0A0A0MRZ7 120 aa10.42□□□□□ -0.74
PCF11-206ENST00000533018 FAM229BQ4G0N7 80 aa10.42□□□□□ -0.74
PCF11-206ENST00000533018 C11orf86A6NJI1 115 aa10.41□□□□□ -0.74
PCF11-206ENST00000533018 LINC00304Q8N9R0 145 aa10.41□□□□□ -0.74
PCF11-206ENST00000533018 SFTA2Q6UW10 78 aa10.4□□□□□ -0.74
PCF11-206ENST00000533018 RETNLBQ9BQ08 111 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms