RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 C1orf137Q5JT78 98 aa8.21□□□□□ -1.1
VPS28-211ENST00000530790 Q8IZM0 81 aa8.21□□□□□ -1.1
VPS28-211ENST00000530790 MRPL18Q9H0U6 180 aaKnown RBP8.21□□□□□ -1.1
VPS28-211ENST00000530790 SRSF9Q13242 221 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS28-211ENST00000530790 C6orf226Q5I0X4 101 aa8.2□□□□□ -1.1
VPS28-211ENST00000530790 C10orf91Q5T1B1 145 aa8.2□□□□□ -1.1
VPS28-211ENST00000530790 FA2HQ7L5A8 372 aa8.2□□□□□ -1.1
VPS28-211ENST00000530790 SMCO4Q9NRQ5 59 aa8.2□□□□□ -1.1
VPS28-211ENST00000530790 CDKN2A-AS1Q9UH64 79 aa8.2□□□□□ -1.1
VPS28-211ENST00000530790 LINC01546A6NGU7 62 aa8.19□□□□□ -1.1
VPS28-211ENST00000530790 M0QXV9 152 aa8.19□□□□□ -1.1
VPS28-211ENST00000530790 FABP9Q0Z7S8 132 aa8.19□□□□□ -1.1
VPS28-211ENST00000530790 LINC00469Q8N7U9 141 aa8.19□□□□□ -1.1
VPS28-211ENST00000530790 F8VRH5 84 aa8.17□□□□□ -1.1
VPS28-211ENST00000530790 CXCL5P42830 114 aa8.17□□□□□ -1.1
VPS28-211ENST00000530790 TINCRA0A1B0GVN0 87 aa8.16□□□□□ -1.1
VPS28-211ENST00000530790 SMIM1B2RUZ4 78 aa8.16□□□□□ -1.1
VPS28-211ENST00000530790 UBE2BP63146 152 aa8.16□□□□□ -1.1
VPS28-211ENST00000530790 C9orf129Q5T035 196 aaKnown RBP8.16□□□□□ -1.1
VPS28-211ENST00000530790 IGLV7-43P04211 117 aa8.15□□□□□ -1.1
VPS28-211ENST00000530790 PMVKQ15126 192 aa8.15□□□□□ -1.1
VPS28-211ENST00000530790 NDUFA5Q16718 116 aa8.15□□□□□ -1.1
VPS28-211ENST00000530790 KRTAP7-1Q8IUC3 87 aa8.15□□□□□ -1.1
VPS28-211ENST00000530790 CST9LQ9H4G1 147 aa8.15□□□□□ -1.1
VPS28-211ENST00000530790 IGLV5-45A0A087WSX0 123 aa8.14□□□□□ -1.11
VPS28-211ENST00000530790 PDZD11Q5EBL8 140 aa8.14□□□□□ -1.11
VPS28-211ENST00000530790 DIRC1Q969H9 104 aa8.14□□□□□ -1.11
VPS28-211ENST00000530790 TRAPPC1Q9Y5R8 145 aa8.14□□□□□ -1.11
VPS28-211ENST00000530790 SNAPINO95295 136 aa8.13□□□□□ -1.11
VPS28-211ENST00000530790 APOC3P02656 99 aa8.13□□□□□ -1.11
VPS28-211ENST00000530790 KRTAP11-1Q8IUC1 163 aa8.13□□□□□ -1.11
VPS28-211ENST00000530790 COX7B2Q8TF08 81 aa8.13□□□□□ -1.11
VPS28-211ENST00000530790 XAGE1AQ9HD64 81 aa8.13□□□□□ -1.11
VPS28-211ENST00000530790 TNXBP22105 4242 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 H3BRM9 83 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 SPINK8P0C7L1 97 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 KRTAP10-8P60410 259 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 SVBPQ8N300 66 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 C18orf32Q8TCD1 76 aa8.12□□□□□ -1.11
VPS28-211ENST00000530790 H0Y9J4 135 aa8.1□□□□□ -1.11
VPS28-211ENST00000530790 HBDP02042 147 aa8.1□□□□□ -1.11
VPS28-211ENST00000530790 LINC00614P0C842 121 aa8.1□□□□□ -1.11
VPS28-211ENST00000530790 NDUFA6P56556 154 aa8.1□□□□□ -1.11
VPS28-211ENST00000530790 ODF1Q14990 250 aa8.1□□□□□ -1.11
VPS28-211ENST00000530790 A0A096LNJ9 63 aa8.09□□□□□ -1.11
VPS28-211ENST00000530790 IGLC3P0DOY3 106 aa8.09□□□□□ -1.11
VPS28-211ENST00000530790 LBHQ53QV2 105 aaPredicted RBP8.09□□□□□ -1.11
VPS28-211ENST00000530790 C22orf24Q9Y442 160 aa8.09□□□□□ -1.11
VPS28-211ENST00000530790 RAB5BP61020 215 aa8.08□□□□□ -1.12
VPS28-211ENST00000530790 PMCHL1Q16048 86 aa8.08□□□□□ -1.12
VPS28-211ENST00000530790 URB1-AS1Q96HZ7 61 aa8.08□□□□□ -1.12
VPS28-211ENST00000530790 NUPR1O60356 82 aa8.07□□□□□ -1.12
VPS28-211ENST00000530790 ATP5LO75964 103 aa8.07□□□□□ -1.12
VPS28-211ENST00000530790 MRPL55Q7Z7F7 128 aaKnown RBP8.07□□□□□ -1.12
VPS28-211ENST00000530790 TP73-AS1Q9UF72 201 aa8.07□□□□□ -1.12
VPS28-211ENST00000530790 UBR4Q5T4S7 5183 aa8.06□□□□□ -1.12
VPS28-211ENST00000530790 ZNF22P17026 224 aaPredicted RBP8.06□□□□□ -1.12
VPS28-211ENST00000530790 IGLV5-39A0A0G2JS06 123 aa8.05□□□□□ -1.12
VPS28-211ENST00000530790 ATP6V1G1O75348 118 aa8.05□□□□□ -1.12
VPS28-211ENST00000530790 PRR26Q8N8Z3 221 aa8.05□□□□□ -1.12
VPS28-211ENST00000530790 IGLV1-50A0A075B6I6 118 aa8.03□□□□□ -1.12
VPS28-211ENST00000530790 ZNF861PO60384 105 aa8.03□□□□□ -1.12
VPS28-211ENST00000530790 BAGE3Q86Y29 109 aa8.03□□□□□ -1.12
VPS28-211ENST00000530790 NKAPP1Q8N9T2 125 aa8.03□□□□□ -1.12
VPS28-211ENST00000530790 C11orf86A6NJI1 115 aa8.02□□□□□ -1.13
VPS28-211ENST00000530790 KRTAP1-4P0C5Y4 121 aa8.02□□□□□ -1.13
VPS28-211ENST00000530790 PFN2P35080 140 aa8.02□□□□□ -1.13
VPS28-211ENST00000530790 TMEM170BQ5T4T1 132 aa8.02□□□□□ -1.13
VPS28-211ENST00000530790 CHCHD1Q96BP2 118 aaKnown RBP8.02□□□□□ -1.13
VPS28-211ENST00000530790 YPEL4Q96NS1 127 aa8.02□□□□□ -1.13
VPS28-211ENST00000530790 IGLV5-37A0A075B6J1 123 aa8.01□□□□□ -1.13
VPS28-211ENST00000530790 SFTA2Q6UW10 78 aa8.01□□□□□ -1.13
VPS28-211ENST00000530790 LINC00167Q96N53 147 aa8.01□□□□□ -1.13
VPS28-211ENST00000530790 ERG28Q9UKR5 140 aa8.01□□□□□ -1.13
VPS28-211ENST00000530790 GAGE10A6NGK3 116 aa8□□□□□ -1.13
VPS28-211ENST00000530790 RPL37AP8A6NKH3 93 aa8□□□□□ -1.13
VPS28-211ENST00000530790 BCE1O60756 84 aa8□□□□□ -1.13
VPS28-211ENST00000530790 RPL13AP40429 203 aaKnown RBP8□□□□□ -1.13
VPS28-211ENST00000530790 RPL28P46779 137 aaKnown RBP8□□□□□ -1.13
VPS28-211ENST00000530790 CBLN2Q8IUK8 224 aa8□□□□□ -1.13
VPS28-211ENST00000530790 CHTOPQ9Y3Y2 248 aaKnown RBP8□□□□□ -1.13
VPS28-211ENST00000530790 COX17Q14061 63 aa7.99□□□□□ -1.13
VPS28-211ENST00000530790 IFI27L1Q96BM0 104 aa7.98□□□□□ -1.13
VPS28-211ENST00000530790 ZNF625Q96I27 306 aaPredicted RBP7.98□□□□□ -1.13
VPS28-211ENST00000530790 TRAV12-1A0A0B4J245 112 aa7.97□□□□□ -1.13
VPS28-211ENST00000530790 HSBP1O75506 76 aa7.97□□□□□ -1.13
VPS28-211ENST00000530790 SCO1O75880 301 aa7.97□□□□□ -1.13
VPS28-211ENST00000530790 S100A1P23297 94 aa7.97□□□□□ -1.13
VPS28-211ENST00000530790 SND1-IT1Q9HBX3 110 aa7.97□□□□□ -1.13
VPS28-211ENST00000530790 LRP2P98164 4655 aa7.96□□□□□ -1.13
VPS28-211ENST00000530790 IGKV2-28A0A075B6P5 120 aa7.96□□□□□ -1.14
VPS28-211ENST00000530790 IGKV2D-28P01615 120 aa7.96□□□□□ -1.14
VPS28-211ENST00000530790 TMEM223A0PJW6 202 aa7.95□□□□□ -1.14
VPS28-211ENST00000530790 VPREB1P12018 145 aa7.95□□□□□ -1.14
VPS28-211ENST00000530790 UBE2AP49459 152 aa7.95□□□□□ -1.14
VPS28-211ENST00000530790 RPL24P83731 157 aaKnown RBP7.95□□□□□ -1.14
VPS28-211ENST00000530790 FAM19A2Q8N3H0 131 aa7.94□□□□□ -1.14
VPS28-211ENST00000530790 TRGC2P03986 189 aa7.93□□□□□ -1.14
VPS28-211ENST00000530790 H0Y8G0 127 aa7.92□□□□□ -1.14
VPS28-211ENST00000530790 LINC00158P58513 81 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms