RNA–Protein interactions for RNA: ENST00000522243.5

SDCBP-209, Transcript of syndecan binding protein, humanhuman

TSL 5

Gene SDCBP, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-209ENST00000522243 LINC00469Q8N7U9 141 aa12.59□□□□□ -0.39
SDCBP-209ENST00000522243 SCGB3A1Q96QR1 104 aa12.59□□□□□ -0.39
SDCBP-209ENST00000522243 GEMIN7Q9H840 131 aaKnown RBP12.59□□□□□ -0.39
SDCBP-209ENST00000522243 UBR4Q5T4S7 5183 aa12.59□□□□□ -0.39
SDCBP-209ENST00000522243 SEC11AP67812 179 aa12.58□□□□□ -0.4
SDCBP-209ENST00000522243 DIRC1Q969H9 104 aa12.58□□□□□ -0.4
SDCBP-209ENST00000522243 SEC11CQ9BY50 192 aa12.57□□□□□ -0.4
SDCBP-209ENST00000522243 S100PP25815 95 aa12.56□□□□□ -0.4
SDCBP-209ENST00000522243 ERASQ7Z444 233 aa12.56□□□□□ -0.4
SDCBP-209ENST00000522243 PRR26Q8N8Z3 221 aa12.55□□□□□ -0.4
SDCBP-209ENST00000522243 GNB1LQ9BYB4 327 aa12.55□□□□□ -0.4
SDCBP-209ENST00000522243 XAGE1AQ9HD64 81 aa12.55□□□□□ -0.4
SDCBP-209ENST00000522243 H0Y9J4 135 aa12.54□□□□□ -0.4
SDCBP-209ENST00000522243 COMMD7Q86VX2 200 aa12.54□□□□□ -0.4
SDCBP-209ENST00000522243 F8VRH5 84 aa12.52□□□□□ -0.41
SDCBP-209ENST00000522243 SMIM1B2RUZ4 78 aa12.51□□□□□ -0.41
SDCBP-209ENST00000522243 MRPL18Q9H0U6 180 aaKnown RBP12.51□□□□□ -0.41
SDCBP-209ENST00000522243 C22orf24Q9Y442 160 aa12.51□□□□□ -0.41
SDCBP-209ENST00000522243 TINCRA0A1B0GVN0 87 aa12.5□□□□□ -0.41
SDCBP-209ENST00000522243 LINC01546A6NGU7 62 aa12.5□□□□□ -0.41
SDCBP-209ENST00000522243 FABP9Q0Z7S8 132 aa12.5□□□□□ -0.41
SDCBP-209ENST00000522243 FA2HQ7L5A8 372 aa12.49□□□□□ -0.41
SDCBP-209ENST00000522243 CST9LQ9H4G1 147 aa12.49□□□□□ -0.41
SDCBP-209ENST00000522243 RPS10P5Q9NQ39 176 aa12.49□□□□□ -0.41
SDCBP-209ENST00000522243 SMCO4Q9NRQ5 59 aa12.49□□□□□ -0.41
SDCBP-209ENST00000522243 CXCL5P42830 114 aa12.48□□□□□ -0.41
SDCBP-209ENST00000522243 COX19Q49B96 90 aa12.48□□□□□ -0.41
SDCBP-209ENST00000522243 PDZD11Q5EBL8 140 aa12.48□□□□□ -0.41
SDCBP-209ENST00000522243 COX7B2Q8TF08 81 aa12.48□□□□□ -0.41
SDCBP-209ENST00000522243 SPINK8P0C7L1 97 aa12.47□□□□□ -0.41
SDCBP-209ENST00000522243 IGLV5-45A0A087WSX0 123 aa12.46□□□□□ -0.41
SDCBP-209ENST00000522243 LINC01549A6NIU2 74 aa12.46□□□□□ -0.41
SDCBP-209ENST00000522243 KRTAP1-4P0C5Y4 121 aa12.46□□□□□ -0.41
SDCBP-209ENST00000522243 PMVKQ15126 192 aa12.46□□□□□ -0.41
SDCBP-209ENST00000522243 C10orf91Q5T1B1 145 aa12.46□□□□□ -0.41
SDCBP-209ENST00000522243 RHEBQ15382 184 aa12.44□□□□□ -0.42
SDCBP-209ENST00000522243 LBHQ53QV2 105 aaPredicted RBP12.44□□□□□ -0.42
SDCBP-209ENST00000522243 RAB5BP61020 215 aa12.43□□□□□ -0.42
SDCBP-209ENST00000522243 CARHSP1Q9Y2V2 147 aaKnown RBP12.43□□□□□ -0.42
SDCBP-209ENST00000522243 IGLV1-50A0A075B6I6 118 aa12.42□□□□□ -0.42
SDCBP-209ENST00000522243 ZNF861PO60384 105 aa12.42□□□□□ -0.42
SDCBP-209ENST00000522243 MRPL55Q7Z7F7 128 aaKnown RBP12.42□□□□□ -0.42
SDCBP-209ENST00000522243 LRP2P98164 4655 aa12.41□□□□□ -0.42
SDCBP-209ENST00000522243 NUPR1O60356 82 aa12.41□□□□□ -0.42
SDCBP-209ENST00000522243 NDUFA6P56556 154 aa12.41□□□□□ -0.42
SDCBP-209ENST00000522243 A0A096LNJ9 63 aa12.4□□□□□ -0.42
SDCBP-209ENST00000522243 URB1-AS1Q96HZ7 61 aa12.4□□□□□ -0.42
SDCBP-209ENST00000522243 TP73-AS1Q9UF72 201 aa12.4□□□□□ -0.42
SDCBP-209ENST00000522243 TRAPPC1Q9Y5R8 145 aa12.4□□□□□ -0.42
SDCBP-209ENST00000522243 RPL37AP8A6NKH3 93 aa12.39□□□□□ -0.43
SDCBP-209ENST00000522243 H3BRM9 83 aa12.38□□□□□ -0.43
SDCBP-209ENST00000522243 PMCHL1Q16048 86 aa12.38□□□□□ -0.43
SDCBP-209ENST00000522243 C18orf32Q8TCD1 76 aa12.38□□□□□ -0.43
SDCBP-209ENST00000522243 LINC00167Q96N53 147 aa12.38□□□□□ -0.43
SDCBP-209ENST00000522243 GAGE10A6NGK3 116 aa12.37□□□□□ -0.43
SDCBP-209ENST00000522243 IGLC3P0DOY3 106 aa12.37□□□□□ -0.43
SDCBP-209ENST00000522243 LINC00614P0C842 121 aa12.36□□□□□ -0.43
SDCBP-209ENST00000522243 BCE1O60756 84 aa12.35□□□□□ -0.43
SDCBP-209ENST00000522243 ATP5LO75964 103 aa12.35□□□□□ -0.43
SDCBP-209ENST00000522243 HBDP02042 147 aa12.34□□□□□ -0.43
SDCBP-209ENST00000522243 APOC3P02656 99 aa12.34□□□□□ -0.43
SDCBP-209ENST00000522243 ZNF22P17026 224 aaPredicted RBP12.34□□□□□ -0.43
SDCBP-209ENST00000522243 PFN2P35080 140 aa12.34□□□□□ -0.43
SDCBP-209ENST00000522243 RPL13AP40429 203 aaKnown RBP12.33□□□□□ -0.44
SDCBP-209ENST00000522243 IGLV5-39A0A0G2JS06 123 aa12.32□□□□□ -0.44
SDCBP-209ENST00000522243 SCO1O75880 301 aa12.32□□□□□ -0.44
SDCBP-209ENST00000522243 RPL28P46779 137 aaKnown RBP12.32□□□□□ -0.44
SDCBP-209ENST00000522243 NKAPP1Q8N9T2 125 aa12.32□□□□□ -0.44
SDCBP-209ENST00000522243 IGLV5-37A0A075B6J1 123 aa12.31□□□□□ -0.44
SDCBP-209ENST00000522243 BAGE3Q86Y29 109 aa12.3□□□□□ -0.44
SDCBP-209ENST00000522243 ZNF625Q96I27 306 aaPredicted RBP12.29□□□□□ -0.44
SDCBP-209ENST00000522243 C11orf86A6NJI1 115 aa12.28□□□□□ -0.44
SDCBP-209ENST00000522243 SNAPINO95295 136 aa12.28□□□□□ -0.44
SDCBP-209ENST00000522243 TMEM170BQ5T4T1 132 aa12.27□□□□□ -0.45
SDCBP-209ENST00000522243 ERG28Q9UKR5 140 aa12.27□□□□□ -0.45
SDCBP-209ENST00000522243 IGKV2-28A0A075B6P5 120 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 A0A087X002 238 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 IGKV2D-28P01615 120 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 NDUFA5Q16718 116 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 SVBPQ8N300 66 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 SND1-IT1Q9HBX3 110 aa12.26□□□□□ -0.45
SDCBP-209ENST00000522243 LPAP08519 4548 aa12.25□□□□□ -0.45
SDCBP-209ENST00000522243 UBE2AP49459 152 aa12.25□□□□□ -0.45
SDCBP-209ENST00000522243 PRR4Q16378 134 aa12.25□□□□□ -0.45
SDCBP-209ENST00000522243 ANAPC11Q9NYG5 84 aa12.25□□□□□ -0.45
SDCBP-209ENST00000522243 TSPAN13O95857 204 aa12.24□□□□□ -0.45
SDCBP-209ENST00000522243 VPREB1P12018 145 aa12.23□□□□□ -0.45
SDCBP-209ENST00000522243 CHTOPQ9Y3Y2 248 aaKnown RBP12.23□□□□□ -0.45
SDCBP-209ENST00000522243 CRYGAP11844 174 aa12.22□□□□□ -0.45
SDCBP-209ENST00000522243 KRTAP13-1Q8IUC0 172 aa12.22□□□□□ -0.45
SDCBP-209ENST00000522243 COX17Q14061 63 aa12.21□□□□□ -0.45
SDCBP-209ENST00000522243 TYMSOSQ8TAI1 123 aa12.21□□□□□ -0.45
SDCBP-209ENST00000522243 PRLHP81277 87 aa12.2□□□□□ -0.46
SDCBP-209ENST00000522243 Q8NDZ9 215 aa12.2□□□□□ -0.46
SDCBP-209ENST00000522243 YPEL4Q96NS1 127 aa12.2□□□□□ -0.46
SDCBP-209ENST00000522243 RNF213Q63HN8 5207 aa12.19□□□□□ -0.46
SDCBP-209ENST00000522243 TMEM238C9JI98 176 aa12.19□□□□□ -0.46
SDCBP-209ENST00000522243 RPL24P83731 157 aaKnown RBP12.19□□□□□ -0.46
SDCBP-209ENST00000522243 A0A0U1RRA0 63 aa12.18□□□□□ -0.46
SDCBP-209ENST00000522243 FAM19A1Q7Z5A9 133 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms