RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 A8MUN3 132 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 LY6G6DO95868 133 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 CD164L2Q6UWJ8 174 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 C1orf64Q8NEQ6 169 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 SPATA3Q8NHX4 192 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 SPG11Q96JI7 2443 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 FAM19A3Q7Z5A8 133 aa8.36□□□□□ -1.07
LIMCH1-213ENST00000511496 C11orf45Q8TAV5 145 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 USMG5Q96IX5 58 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 Q1T7F1 81 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 LINC01006Q8NI28 216 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 LOC110117498A0A087WWA1 95 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 CELA1Q9UNI1 258 aa8.35□□□□□ -1.07
LIMCH1-213ENST00000511496 Q6ZQY7 126 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 STHQ8IWL8 128 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 TRGV1A0A0A0MS02 117 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 DEFB131AP59861 70 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 BRD3OSQ6XYD6 125 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 MUC7Q8TAX7 377 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 FAM30AQ9NZY2 134 aa8.33□□□□□ -1.08
LIMCH1-213ENST00000511496 ERC2-IT1O76042 136 aa8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 CR1P17927 2039 aa8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 LINC00575Q6W349 94 aa8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 WNK1Q9H4A3 2382 aa8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 OCR1Q9BZK8 76 aa8.32□□□□□ -1.08
LIMCH1-213ENST00000511496 SYCNQ0VAF6 134 aa8.31□□□□□ -1.08
LIMCH1-213ENST00000511496 KTN1-AS1Q86SY8 53 aa8.31□□□□□ -1.08
LIMCH1-213ENST00000511496 C11orf44Q8N8P7 122 aa8.31□□□□□ -1.08
LIMCH1-213ENST00000511496 CSPG4Q6UVK1 2322 aa8.3□□□□□ -1.08
LIMCH1-213ENST00000511496 IGLV4-60A0A075B6I1 120 aa8.29□□□□□ -1.08
LIMCH1-213ENST00000511496 IGHV3OR16-9A0A0B4J2B5 98 aa8.29□□□□□ -1.08
LIMCH1-213ENST00000511496 K7EMT4 169 aa8.29□□□□□ -1.08
LIMCH1-213ENST00000511496 ANKRD11Q6UB99 2663 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-213ENST00000511496 CHKB-CPT1BH3BT56 60 aa8.28□□□□□ -1.08
LIMCH1-213ENST00000511496 KHDC1LQ5JSQ8 128 aa8.28□□□□□ -1.08
LIMCH1-213ENST00000511496 PDE6GP18545 87 aa8.28□□□□□ -1.08
LIMCH1-213ENST00000511496 APOC4P55056 127 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 UBE2BP63146 152 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 CSMD2Q7Z408 3487 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 M0R378 163 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 UBE2E2Q96LR5 201 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 LINC00588Q9Y4M8 146 aa8.27□□□□□ -1.09
LIMCH1-213ENST00000511496 LOC100131303A0A0U1RQF7 123 aa8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 C9orf116Q5BN46 136 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 ITPR1Q14643 2758 aa8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 IGKV4-1P06312 121 aa8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 C10orf99Q6UWK7 81 aa8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 CLPSL2Q6UWE3 100 aa8.26□□□□□ -1.09
LIMCH1-213ENST00000511496 LINC00269Q8N2A0 174 aa8.25□□□□□ -1.09
LIMCH1-213ENST00000511496 TRIOBPQ9H2D6 2365 aa8.25□□□□□ -1.09
LIMCH1-213ENST00000511496 C10orf25Q5T742 122 aa8.25□□□□□ -1.09
LIMCH1-213ENST00000511496 CRYBG3Q68DQ2 2970 aa8.24□□□□□ -1.09
LIMCH1-213ENST00000511496 H3BUX3 64 aa8.24□□□□□ -1.09
LIMCH1-213ENST00000511496 C9orf66Q5T8R8 295 aa8.24□□□□□ -1.09
LIMCH1-213ENST00000511496 SMIM29Q86T20 159 aa8.23□□□□□ -1.09
LIMCH1-213ENST00000511496 C16orf90A8MZG2 172 aa8.23□□□□□ -1.09
LIMCH1-213ENST00000511496 TRGV2A0A075B6R0 118 aa8.23□□□□□ -1.09
LIMCH1-213ENST00000511496 C3orf84H3BNL1 204 aa8.23□□□□□ -1.09
LIMCH1-213ENST00000511496 Q8NDZ9 215 aa8.23□□□□□ -1.09
LIMCH1-213ENST00000511496 PSCAO43653 123 aa8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 HRNRQ86YZ3 2850 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 TLN1Q9Y490 2541 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 ADORA2A-AS1P86434 159 aa8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 Q5VV11 94 aa8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 KLK12Q9UKR0 248 aa8.22□□□□□ -1.09
LIMCH1-213ENST00000511496 HCG22E2RYF7 251 aa8.21□□□□□ -1.09
LIMCH1-213ENST00000511496 H3BUA1 57 aa8.21□□□□□ -1.09
LIMCH1-213ENST00000511496 LINC00612Q8N6U2 182 aa8.21□□□□□ -1.1
LIMCH1-213ENST00000511496 ANKRD17O75179 2603 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-213ENST00000511496 IGHV4-28A0A0C4DH34 117 aa8.2□□□□□ -1.1
LIMCH1-213ENST00000511496 IGLV1-40P01703 118 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 UBE2AP49459 152 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 LINC00959A0A1B0GUT2 108 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 INSP01308 110 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 TRBV6-8A0A0A6YYG3 113 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 LYRM9A8MSI8 78 aa8.19□□□□□ -1.1
LIMCH1-213ENST00000511496 ZNF73O43830 326 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-213ENST00000511496 PRR15LQ9BU68 103 aa8.18□□□□□ -1.1
LIMCH1-213ENST00000511496 IGHV4-38-2P0DP08 117 aa8.18□□□□□ -1.1
LIMCH1-213ENST00000511496 DIRC1Q969H9 104 aa8.18□□□□□ -1.1
LIMCH1-213ENST00000511496 NOP10Q9NPE3 64 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-213ENST00000511496 TRGV4A0A0C4DH28 118 aa8.17□□□□□ -1.1
LIMCH1-213ENST00000511496 COX7BP24311 80 aa8.17□□□□□ -1.1
LIMCH1-213ENST00000511496 JMJD1CQ15652 2540 aa8.17□□□□□ -1.1
LIMCH1-213ENST00000511496 H3BS24 57 aa8.16□□□□□ -1.1
LIMCH1-213ENST00000511496 A6NED7 52 aa8.16□□□□□ -1.1
LIMCH1-213ENST00000511496 ESM1Q9NQ30 184 aa8.16□□□□□ -1.1
LIMCH1-213ENST00000511496 HIGD2BQ4VC39 106 aa8.16□□□□□ -1.1
LIMCH1-213ENST00000511496 NDUFS5O43920 106 aa8.15□□□□□ -1.1
LIMCH1-213ENST00000511496 Q8IZM0 81 aa8.15□□□□□ -1.1
LIMCH1-213ENST00000511496 IGLV10-54A0A075B6I4 117 aa8.15□□□□□ -1.11
LIMCH1-213ENST00000511496 IGHV4-31P0DP07 118 aa8.14□□□□□ -1.11
LIMCH1-213ENST00000511496 DEFB136Q30KP8 78 aa8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 SONP18583 2426 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 LMO4P61968 165 aa8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 LCA10Q71F78 164 aa8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 FN1P02751 2386 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 TLN2Q9Y4G6 2542 aa8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms