RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KIR2DL4Q99706 377 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 LINC00467Q9BRT7 94 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 AGPAT4-IT1Q9H0P7 198 aa5.61□□□□□ -1.51
SCN1A-207ENST00000507401 CSDC2Q9Y534 153 aaKnown RBP5.61□□□□□ -1.51
SCN1A-207ENST00000507401 TRAV12-3A0A0B4J271 114 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 KLLNB2CW77 178 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 F5H768 121 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 VCYO14598 125 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 TIMM17BO60830 172 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 CRYGAP11844 174 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 TMEM258P61165 79 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 DAZ2Q13117 558 aaKnown RBP5.6□□□□□ -1.51
SCN1A-207ENST00000507401 RHOHQ15669 191 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 C9orf153Q5TBE3 101 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 NOP10Q9NPE3 64 aaKnown RBP5.6□□□□□ -1.51
SCN1A-207ENST00000507401 HECTD4Q9Y4D8 3996 aa5.6□□□□□ -1.51
SCN1A-207ENST00000507401 FAT2Q9NYQ8 4349 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 IGKV2-40A0A087WW87 121 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-207ENST00000507401 TRAV21A0A0B4J279 112 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 TRBV6-5A0A0K0K1A5 114 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 H3BNG1 76 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 M0R2N4 97 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 RTL8CO15255 209 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 NXPH4O95158 308 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 IGKV2D-40P01614 121 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-207ENST00000507401 INAFM2P0DMQ5 153 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 PRB4P10163 310 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-207ENST00000507401 ZNF80P51504 273 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-207ENST00000507401 CCL18P55774 89 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 ANXA2RQ3ZCQ2 193 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 ZNF876PQ49A33 203 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 ZNF575Q86XF7 245 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 DAND5Q8N907 189 aa5.59□□□□□ -1.51
SCN1A-207ENST00000507401 A0A1B0GVY2 172 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 IGIPA6NJ69 53 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 LST1O00453 97 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 Q1RN00 199 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 SDIM1Q6ZPB5 146 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 MSRB1Q9NZV6 116 aa5.58□□□□□ -1.52
SCN1A-207ENST00000507401 NACAE9PAV3 2078 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 PKD1P98161 4303 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 IGLV4-69A0A075B6H9 119 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 IGKV3D-20A0A0C4DH25 116 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 A4D1N5 150 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 NDUFC2-KCTD14E9PQ53 114 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 COX7CP15954 63 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 RNASE4P34096 147 aaKnown RBP5.57□□□□□ -1.52
SCN1A-207ENST00000507401 ZNF415Q09FC8 603 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 ZNF56Q15929 161 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 C1orf134Q5TEV5 83 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 ZFAND2AQ8N6M9 145 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 C11orf72Q8NBR9 251 aa5.57□□□□□ -1.52
SCN1A-207ENST00000507401 TRGV11A0A075B6L2 103 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 TRBV27A0A0K0K1C4 114 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 AMELXQ99217 191 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 LINC00588Q9Y4M8 146 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 PHLDA3Q9Y5J5 127 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 ICOSQ9Y6W8 199 aa5.56□□□□□ -1.52
SCN1A-207ENST00000507401 IGHV1OR15-1A0A075B7D0 117 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 NBDYA0A0U1RRE5 68 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 TEX49A0A1B0GTD5 131 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 TMEM223A0PJW6 202 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 H7C423 109 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 GATA1P15976 413 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-207ENST00000507401 ZNF22P17026 224 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-207ENST00000507401 S100A4P26447 101 aaKnown RBP5.55□□□□□ -1.52
SCN1A-207ENST00000507401 POLR2KP53803 58 aaKnown RBP5.55□□□□□ -1.52
SCN1A-207ENST00000507401 HERVK_113P63121 156 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 GAGE2AQ6NT46 116 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 Q6ZTI0 123 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 C5orf38Q86SI9 138 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 Q8TAT8 98 aa5.55□□□□□ -1.52
SCN1A-207ENST00000507401 TRGV2A0A075B6R0 118 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 FAM236AA0A1B0GUQ0 79 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 FAM236BA0A1B0GV22 79 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 TRACP01848 142 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 CRYGDP07320 174 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 ESRGQ1W209 222 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 PRR9Q5T870 116 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 Q6ZQT7 251 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 UPK3BQ9BT76 320 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 Q9H8V8 135 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 PYGO1Q9Y3Y4 419 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 HERC2O95714 4834 aa5.54□□□□□ -1.52
SCN1A-207ENST00000507401 KIAA1109Q2LD37 5005 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 TRGV1A0A0A0MS02 117 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 TRIAP1O43715 76 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 HIST1H4AP62805 103 aaKnown RBP5.53□□□□□ -1.52
SCN1A-207ENST00000507401 CIRBPQ14011 172 aaKnown RBP5.53□□□□□ -1.52
SCN1A-207ENST00000507401 MIAQ16674 131 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 MUSTN1Q8IVN3 82 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 C6orf223Q8N319 242 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 VSIG2Q96IQ7 327 aa5.53□□□□□ -1.52
SCN1A-207ENST00000507401 MUC4Q99102 2169 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 A0A096LPF7 62 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 BCE1O60756 84 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 GAS8-AS1O95177 125 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 LINC00694P0DN24 101 aa5.52□□□□□ -1.53
SCN1A-207ENST00000507401 FAM19A5Q7Z5A7 132 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-207ENST00000507401 CHCHD5Q9BSY4 110 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms