RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 APC2O95996 2303 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 A0A1B0GWA3 101 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 DEFB105AQ8NG35 78 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 FAT3Q8TDW7 4589 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 SPTBN4Q9H254 2564 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 EP300Q09472 2414 aaPredicted RBP-0.18□□□□□ -2.44
SMC4-225ENST00000497203 SPHKAPQ2M3C7 1700 aa-0.18□□□□□ -2.44
SMC4-225ENST00000497203 MAP1BP46821 2468 aaKnown RBP-0.19□□□□□ -2.44
SMC4-225ENST00000497203 TNXBP22105 4242 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 COL6A3P12111 3177 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 M0R2T5 61 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 SPRR2BP35325 72 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 LINC01600Q96MT4 127 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.19□□□□□ -2.44
SMC4-225ENST00000497203 BPTFQ12830 3046 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 ACANP16112 2415 aa-0.19□□□□□ -2.44
SMC4-225ENST00000497203 ALMS1Q8TCU4 4167 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 MYCBP2O75592 4640 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 SRRM2Q9UQ35 2752 aaKnown RBP-0.2□□□□□ -2.44
SMC4-225ENST00000497203 PDZD2O15018 2839 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 IQSEC2Q5JU85 1478 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 MRC2Q9UBG0 1479 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 CRYM-AS1A6NIL9 109 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 SAA2P0DJI9 122 aaPredicted RBP-0.2□□□□□ -2.44
SMC4-225ENST00000497203 SEC11AP67812 179 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 VAMP8Q9BV40 100 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 DNHD1Q96M86 4753 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 TULP4Q9NRJ4 1543 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 KIAA0556O60303 1618 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 LAMA2P24043 3122 aaKnown RBP-0.2□□□□□ -2.44
SMC4-225ENST00000497203 TOP2BQ02880 1626 aa-0.2□□□□□ -2.44
SMC4-225ENST00000497203 ADGRL2O95490 1459 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 LINC00959A0A1B0GUT2 108 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 SNCAP37840 140 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 KRTAP20-2Q3LI61 65 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 SFTA2Q6UW10 78 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 SCN7AQ01118 1682 aa-0.21□□□□□ -2.44
SMC4-225ENST00000497203 SETXQ7Z333 2677 aaKnown RBP-0.21□□□□□ -2.44
SMC4-225ENST00000497203 TENM2Q9NT68 2774 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 DSPP15924 2871 aaKnown RBP-0.22□□□□□ -2.44
SMC4-225ENST00000497203 SETD2Q9BYW2 2564 aaPredicted RBP-0.22□□□□□ -2.44
SMC4-225ENST00000497203 FLNBO75369 2602 aaKnown RBP-0.22□□□□□ -2.44
SMC4-225ENST00000497203 FAM223BA6NKX1 122 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 KRTAP19-7Q3SYF9 63 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 WNK1Q9H4A3 2382 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 TGP01266 2768 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 A0A0G2JMZ2 1700 aa-0.22□□□□□ -2.44
SMC4-225ENST00000497203 ATRQ13535 2644 aa-0.22□□□□□ -2.45
SMC4-225ENST00000497203 TEP1Q99973 2627 aaKnown RBP-0.22□□□□□ -2.45
SMC4-225ENST00000497203 C1orf167Q5SNV9 1468 aa-0.22□□□□□ -2.45
SMC4-225ENST00000497203 MAP1AP78559 2803 aaPredicted RBP-0.23□□□□□ -2.45
SMC4-225ENST00000497203 PRRC2CQ9Y520 2896 aaKnown RBP-0.23□□□□□ -2.45
SMC4-225ENST00000497203 CHD8Q9HCK8 2581 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 NUP188Q5SRE5 1749 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 XRN1Q8IZH2 1706 aaKnown RBP-0.23□□□□□ -2.45
SMC4-225ENST00000497203 URB1O60287 2271 aaKnown RBP-0.23□□□□□ -2.45
SMC4-225ENST00000497203 C20orf202A1L168 122 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 CPSF4LA6NMK7 179 aaKnown RBP-0.23□□□□□ -2.45
SMC4-225ENST00000497203 TMEM262E9PQX1 116 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 H3BQF6 201 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 I3L3M4 83 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 HSD52Q0P140 79 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 KLK9Q2XQG4 91 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 APLNQ9ULZ1 77 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 BSNQ9UPA5 3926 aa-0.23□□□□□ -2.45
SMC4-225ENST00000497203 NBEAL1Q6ZS30 2694 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 WDR87Q6ZQQ6 2873 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 LRP1BQ9NZR2 4599 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 A0A1B0GU69 56 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 GNGT1P63211 74 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 DEFB135Q30KP9 77 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 CGREF1Q99674 301 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 LINC00846Q9NV44 126 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 CRIPTQ9P021 101 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 CREBBPQ92793 2442 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 NLRP1Q9C000 1473 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 CC2D2AQ9P2K1 1620 aa-0.24□□□□□ -2.45
SMC4-225ENST00000497203 STAB2Q8WWQ8 2551 aa-0.25□□□□□ -2.45
SMC4-225ENST00000497203 NIPBLQ6KC79 2804 aaeCLIP-0.25□□□□□ -2.45
SMC4-225ENST00000497203 EDC4Q6P2E9 1401 aaKnown RBP-0.25□□□□□ -2.45
SMC4-225ENST00000497203 PDCD11Q14690 1871 aaKnown RBP-0.25□□□□□ -2.45
SMC4-225ENST00000497203 CNOT1A5YKK6 2376 aaKnown RBP-0.25□□□□□ -2.45
SMC4-225ENST00000497203 SONP18583 2426 aaKnown RBP-0.25□□□□□ -2.45
SMC4-225ENST00000497203 FAT2Q9NYQ8 4349 aa-0.25□□□□□ -2.45
SMC4-225ENST00000497203 LAMA5O15230 3695 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 NBEAL2Q6ZNJ1 2754 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 DNAJC13O75165 2243 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 CHD1O14646 1710 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 TOPAZ1Q8N9V7 1692 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 PLEKHH2Q8IVE3 1493 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 NCOA3Q9Y6Q9 1424 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 TRAV30A0A087WSZ9 112 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 MT4P47944 62 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 PSMG4Q5JS54 123 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 C6orf201Q7Z4U5 140 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 LCN9Q8WX39 176 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 ZFHX3Q15911 3703 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 EPG5Q9HCE0 2579 aa-0.26□□□□□ -2.45
SMC4-225ENST00000497203 COL6A5A8TX70 2615 aa-0.27□□□□□ -2.45
SMC4-225ENST00000497203 A0A087WVE0 104 aa-0.27□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms