RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SCGB1C2P0DMR2 95 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 MEIG1Q5JSS6 88 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 B9D2Q9BPU9 175 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 PRR34Q9NV39 138 aa7.36□□□□□ -1.23
USP4-214ENST00000491791 DNAH3Q8TD57 4116 aa7.35□□□□□ -1.23
USP4-214ENST00000491791 TRIAP1O43715 76 aa7.35□□□□□ -1.23
USP4-214ENST00000491791 CXCL5P42830 114 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 KIAA0087Q14695 138 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 ETDBQ3ZM63 59 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 TEN1Q86WV5 123 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 DAND5Q8N907 189 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 MUC7Q8TAX7 377 aa7.34□□□□□ -1.23
USP4-214ENST00000491791 LST1O00453 97 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 NHLRC4P0CG21 123 aaPredicted RBP7.33□□□□□ -1.24
USP4-214ENST00000491791 RPL13AP40429 203 aaKnown RBP7.33□□□□□ -1.24
USP4-214ENST00000491791 REG3AQ06141 175 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 FOXI1Q12951 378 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 COX17Q14061 63 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 Q1RN00 199 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 LINC01620Q4KN68 170 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 C5orf38Q86SI9 138 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 LINC00269Q8N2A0 174 aa7.33□□□□□ -1.24
USP4-214ENST00000491791 CHCHD10Q8WYQ3 142 aaPredicted RBP7.33□□□□□ -1.24
USP4-214ENST00000491791 TRAV13-2A0A0B4J235 113 aa7.32□□□□□ -1.24
USP4-214ENST00000491791 TRBV10-2A0A0K0K1G8 114 aa7.32□□□□□ -1.24
USP4-214ENST00000491791 COX7A2LO14548 114 aa7.32□□□□□ -1.24
USP4-214ENST00000491791 LYPD5Q6UWN5 251 aa7.32□□□□□ -1.24
USP4-214ENST00000491791 MIR7-3HGQ8N6C7 128 aa7.32□□□□□ -1.24
USP4-214ENST00000491791 KLK5Q9Y337 293 aaPredicted RBP7.32□□□□□ -1.24
USP4-214ENST00000491791 IGKV3OR2-268A0A0C4DH90 116 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 SLC25A20O43772 301 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 XCL1P47992 114 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 C6orf226Q5I0X4 101 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 PPDPFLQ8WWR9 84 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 VPS25Q9BRG1 176 aa7.31□□□□□ -1.24
USP4-214ENST00000491791 TRAV8-4A0A0B4J246 113 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 H3BT86 120 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 RPL28P46779 137 aaKnown RBP7.3□□□□□ -1.24
USP4-214ENST00000491791 CCL18P55774 89 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 NPC2P61916 151 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 RNF151Q2KHN1 245 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 ANKRD29Q8N6D5 301 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 TOMM7Q9P0U1 55 aa7.3□□□□□ -1.24
USP4-214ENST00000491791 IGKV2-28A0A075B6P5 120 aa7.29□□□□□ -1.24
USP4-214ENST00000491791 H7C2G1 150 aa7.29□□□□□ -1.24
USP4-214ENST00000491791 IGKV2D-28P01615 120 aa7.29□□□□□ -1.24
USP4-214ENST00000491791 ANGP03950 147 aaKnown RBP7.29□□□□□ -1.24
USP4-214ENST00000491791 CARD19Q96LW7 228 aa7.29□□□□□ -1.24
USP4-214ENST00000491791 SPATA25Q9BR10 227 aa7.29□□□□□ -1.24
USP4-214ENST00000491791 GVQW2A0A096LPI5 108 aaPredicted RBP7.28□□□□□ -1.24
USP4-214ENST00000491791 A0A0J9YWU9 116 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 C9JAW5 83 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 C3orf84H3BNL1 204 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 NDUFC2O95298 119 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 TRACP01848 142 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 LINC00158P58513 81 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 SND1-IT1Q9HBX3 110 aa7.28□□□□□ -1.24
USP4-214ENST00000491791 A0A0U1RRA0 63 aa7.27□□□□□ -1.25
USP4-214ENST00000491791 ENHOQ6UWT2 76 aa7.27□□□□□ -1.25
USP4-214ENST00000491791 RYR3Q15413 4870 aa7.27□□□□□ -1.25
USP4-214ENST00000491791 STAB2Q8WWQ8 2551 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 CRPP02741 224 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 HTN3P15516 51 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 CKS1BP61024 79 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 CFAP161Q6P656 301 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 MTURNQ8N3F0 131 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 LINC00337Q8N6G1 96 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 TM2D3Q9BRN9 247 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 RETNQ9HD89 108 aa7.26□□□□□ -1.25
USP4-214ENST00000491791 Q6ZTC4 211 aa7.25□□□□□ -1.25
USP4-214ENST00000491791 Q8N3U1 123 aa7.25□□□□□ -1.25
USP4-214ENST00000491791 DNAH9Q9NYC9 4486 aa7.25□□□□□ -1.25
USP4-214ENST00000491791 GAGE12HA6NDE8 117 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 F8WDY8 70 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 H0YGX0 51 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 MALP21145 153 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 LINC01556Q5JQF7 62 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 KRTAP26-1Q6PEX3 210 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 CLPSL2Q6UWE3 100 aa7.24□□□□□ -1.25
USP4-214ENST00000491791 C2orf82Q6UX34 121 aa7.23□□□□□ -1.25
USP4-214ENST00000491791 C11orf45Q8TAV5 145 aa7.23□□□□□ -1.25
USP4-214ENST00000491791 CLEC2BQ92478 149 aa7.23□□□□□ -1.25
USP4-214ENST00000491791 KLK12Q9UKR0 248 aa7.23□□□□□ -1.25
USP4-214ENST00000491791 DEFB131BA0A096LNP1 70 aa7.22□□□□□ -1.25
USP4-214ENST00000491791 PFN2P35080 140 aa7.22□□□□□ -1.25
USP4-214ENST00000491791 ESRGQ1W209 222 aa7.22□□□□□ -1.25
USP4-214ENST00000491791 NTN5Q8WTR8 489 aaPredicted RBP7.22□□□□□ -1.25
USP4-214ENST00000491791 IGLV10-54A0A075B6I4 117 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 A0A1B0GX51 115 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 SCGB1A1P11684 91 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 SPAG11BQ08648 103 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 C15orf53Q8NAA6 179 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 SMIM11BQ8TCY0 68 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 SIGMAR1Q99720 223 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 CDIP1Q9H305 208 aa7.21□□□□□ -1.26
USP4-214ENST00000491791 DNAH10OSP0CZ25 163 aa7.2□□□□□ -1.26
USP4-214ENST00000491791 CASC10Q5T4H9 136 aa7.2□□□□□ -1.26
USP4-214ENST00000491791 WFDC10BQ8IUB3 73 aa7.2□□□□□ -1.26
USP4-214ENST00000491791 TRAV10A0A0B4J240 114 aa7.19□□□□□ -1.26
USP4-214ENST00000491791 FAM240AA0A1B0GVK7 77 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms