RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 CCL18P55774 89 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 RPS25P62851 125 aaKnown RBP-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 SMIM21Q3B7S5 101 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 KRTAP19-2Q3LHN2 52 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 ANP32BQ92688 251 aaKnown RBP-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 MAP3K4Q9Y6R4 1608 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 MYOM1P52179 1685 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 LY75O60449 1722 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 POLR1AO95602 1720 aaPredicted RBP-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 EFCAB6Q5THR3 1501 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 ARHGEF12Q9NZN5 1544 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 MT1AP04731 61 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 SPRR1AP35321 89 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 KRTAP19-5Q3LI72 72 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 SDF2Q99470 211 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 R4GMQ9 66 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 LRRC37A3O60309 1634 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 USP32Q8NFA0 1604 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 PTPN23Q9H3S7 1636 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 MYH9P35579 1960 aaKnown RBP-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 PLCH1Q4KWH8 1693 aa-0.47□□□□□ -2.48
SCN1A-206ENST00000491429 PRDM2Q13029 1718 aa-0.47□□□□□ -2.49
SCN1A-206ENST00000491429 BCORQ6W2J9 1755 aa-0.47□□□□□ -2.49
SCN1A-206ENST00000491429 DOCK1Q14185 1865 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 CTXND1A0A1B0GTU2 59 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 HCG22E2RYF7 251 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 I3L2K1 104 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 M0R135 149 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 SIX6O95475 246 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 TCEAL4Q96EI5 215 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 CRIPTQ9P021 101 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 ANKRD26Q9UPS8 1709 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 NKTRP30414 1462 aaKnown RBP-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 IFT140Q96RY7 1462 aa-0.48□□□□□ -2.49
SCN1A-206ENST00000491429 NRKQ7Z2Y5 1582 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 PEG3Q9GZU2 1588 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 QRICH2Q9H0J4 1663 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 FXYD6-FXYD2A0A087WZ82 144 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 LOC730098B7Z3J9 87 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 MT1GP13640 62 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 SMCO1Q147U7 214 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 ALX1Q15699 326 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 KLK9Q2XQG4 91 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 C10orf128Q5T292 105 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 AQP10Q96PS8 301 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 TMEM191AQ9H0A3 160 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 ZNF518AQ6AHZ1 1483 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 USF3Q68DE3 2245 aa-0.49□□□□□ -2.49
SCN1A-206ENST00000491429 ABCA3Q99758 1704 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 TRAV13-2A0A0B4J235 113 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 HIST1H1DP16402 221 aaKnown RBP-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 S100A3P33764 101 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 SMIM4Q8WVI0 70 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 DPH3Q96FX2 82 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 AGPAT4-IT1Q9H0P7 198 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 PRO3102Q9H379 93 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 LRRC7Q96NW7 1537 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 UGGT1Q9NYU2 1555 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 KIAA0556O60303 1618 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 TOPAZ1Q8N9V7 1692 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 KDM3BQ7LBC6 1761 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 PLXNB2O15031 1838 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 MYH6P13533 1939 aa-0.5□□□□□ -2.49
SCN1A-206ENST00000491429 A0A0G2JMZ2 1700 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 LYNX1G3V0Z9 82 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 H0YAA0 97 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 MT1EP04732 61 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 MRC1P22897 1456 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 SPAG11AQ6PDA7 123 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 DOT1LQ8TEK3 1739 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 PDCD10Q9BUL8 212 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 LINC00472Q9H8W2 130 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 TULP4Q9NRJ4 1543 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 MBD5Q9P267 1494 aa-0.51□□□□□ -2.49
SCN1A-206ENST00000491429 C4AP0C0L4 1744 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 C4BP0C0L5 1744 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 PARP4Q9UKK3 1724 aaKnown RBP-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 PREX2Q70Z35 1606 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 RNF17Q9BXT8 1623 aaKnown RBP-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 RAPGEF2Q9Y4G8 1499 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 C10orf71Q711Q0 1435 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 SPRR1BP22528 89 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 TP53AIP1Q9HCN2 124 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 CCDC167Q9P0B6 97 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 V9GYH0 126 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 CDC42BPAQ5VT25 1732 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 ARAP2Q8WZ64 1704 aa-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 MARF1Q9Y4F3 1742 aaKnown RBP-0.52□□□□□ -2.49
SCN1A-206ENST00000491429 NWD1Q149M9 1564 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 C1orf167Q5SNV9 1468 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 PXDNQ92626 1479 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 LOC105371267A0A1B0GV96 52 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 K7EQZ3 153 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 DCDP81605 110 aaKnown RBP-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 TTC9CQ8N5M4 171 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 PFDN5Q99471 154 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 CEP152O94986 1710 aa-0.53□□□□□ -2.49
SCN1A-206ENST00000491429 NRXN3Q9Y4C0 1643 aa-0.53□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms