RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 LINC00959A0A1B0GUT2 108 aa9.16□□□□□ -0.94
SHOX2-205ENST00000490689 BRK1Q8WUW1 75 aa9.16□□□□□ -0.94
SHOX2-205ENST00000490689 CHCHD10Q8WYQ3 142 aaPredicted RBP9.16□□□□□ -0.94
SHOX2-205ENST00000490689 Q6ZQY7 126 aa9.16□□□□□ -0.94
SHOX2-205ENST00000490689 KIR2DL5BQ8NHK3 375 aa9.16□□□□□ -0.94
SHOX2-205ENST00000490689 MPLKIPQ8TAP9 179 aa9.16□□□□□ -0.94
SHOX2-205ENST00000490689 DPH3Q96FX2 82 aa9.15□□□□□ -0.94
SHOX2-205ENST00000490689 CAMK2N2Q96S95 79 aa9.15□□□□□ -0.94
SHOX2-205ENST00000490689 A8MTW9 85 aa9.15□□□□□ -0.95
SHOX2-205ENST00000490689 NREPQ16612 68 aa9.15□□□□□ -0.95
SHOX2-205ENST00000490689 NKAPP1Q8N9T2 125 aa9.15□□□□□ -0.95
SHOX2-205ENST00000490689 PRO0255Q9UI72 69 aa9.15□□□□□ -0.95
SHOX2-205ENST00000490689 A0A0U1RQV1 116 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 NTM-AS1Q6ZSK4 140 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 CHD6Q8TD26 2715 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 IGLV5-39A0A0G2JS06 123 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 TRBV6-4A0A1B0GX49 114 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 REG3AQ06141 175 aa9.14□□□□□ -0.95
SHOX2-205ENST00000490689 DIRC1Q969H9 104 aa9.13□□□□□ -0.95
SHOX2-205ENST00000490689 HIGD2BQ4VC39 106 aa9.13□□□□□ -0.95
SHOX2-205ENST00000490689 BBC3Q96PG8 261 aaPredicted RBP9.13□□□□□ -0.95
SHOX2-205ENST00000490689 ZFHX4Q86UP3 3567 aa9.12□□□□□ -0.95
SHOX2-205ENST00000490689 CCKP06307 115 aa9.12□□□□□ -0.95
SHOX2-205ENST00000490689 DEFB113Q30KQ7 82 aa9.11□□□□□ -0.95
SHOX2-205ENST00000490689 C11orf72Q8NBR9 251 aa9.11□□□□□ -0.95
SHOX2-205ENST00000490689 DNAJC9-AS1A6NH13 148 aa9.11□□□□□ -0.95
SHOX2-205ENST00000490689 IGHV4-31P0DP07 118 aa9.11□□□□□ -0.95
SHOX2-205ENST00000490689 BEAN1Q3B7T3 259 aa9.11□□□□□ -0.95
SHOX2-205ENST00000490689 NDUFC2O95298 119 aa9.1□□□□□ -0.95
SHOX2-205ENST00000490689 ATP5EP2Q5VTU8 51 aa9.1□□□□□ -0.95
SHOX2-205ENST00000490689 IGKV2D-24A0A075B6R9 120 aa9.1□□□□□ -0.95
SHOX2-205ENST00000490689 Q8N814 137 aa9.09□□□□□ -0.95
SHOX2-205ENST00000490689 BRI3O95415 125 aa9.09□□□□□ -0.95
SHOX2-205ENST00000490689 LINC00482Q8N8I6 264 aa9.09□□□□□ -0.95
SHOX2-205ENST00000490689 PRORYQ9H606 182 aa9.09□□□□□ -0.95
SHOX2-205ENST00000490689 A0A087WZ39 114 aa9.09□□□□□ -0.96
SHOX2-205ENST00000490689 FASNP49327 2511 aaKnown RBP9.08□□□□□ -0.96
SHOX2-205ENST00000490689 COX7BP24311 80 aa9.08□□□□□ -0.96
SHOX2-205ENST00000490689 F8WEM9 126 aa9.08□□□□□ -0.96
SHOX2-205ENST00000490689 DMXL1Q9Y485 3027 aa9.07□□□□□ -0.96
SHOX2-205ENST00000490689 C3orf84H3BNL1 204 aa9.07□□□□□ -0.96
SHOX2-205ENST00000490689 UNQ6190/PRO20217Q6UXQ8 127 aa9.07□□□□□ -0.96
SHOX2-205ENST00000490689 USP24Q9UPU5 2620 aa9.07□□□□□ -0.96
SHOX2-205ENST00000490689 TNRC18O15417 2968 aaPredicted RBP9.06□□□□□ -0.96
SHOX2-205ENST00000490689 IGLV5-45A0A087WSX0 123 aa9.06□□□□□ -0.96
SHOX2-205ENST00000490689 C4orf26Q17RF5 130 aa9.06□□□□□ -0.96
SHOX2-205ENST00000490689 CRYGAP11844 174 aa9.06□□□□□ -0.96
SHOX2-205ENST00000490689 FUSP35637 526 aaKnown RBP eCLIP9.05□□□□□ -0.96
SHOX2-205ENST00000490689 IGKV2-28A0A075B6P5 120 aa9.05□□□□□ -0.96
SHOX2-205ENST00000490689 BPY2O14599 106 aa9.05□□□□□ -0.96
SHOX2-205ENST00000490689 IGKV2D-28P01615 120 aa9.05□□□□□ -0.96
SHOX2-205ENST00000490689 APOC4P55056 127 aa9.05□□□□□ -0.96
SHOX2-205ENST00000490689 DEFB121Q5J5C9 76 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 ASH1LQ9NR48 2969 aaKnown RBP9.04□□□□□ -0.96
SHOX2-205ENST00000490689 COL12A1Q99715 3063 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 KLK9Q2XQG4 91 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 CD164L2Q6UWJ8 174 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 ZNF843Q8N446 348 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 IGHV3OR16-9A0A0B4J2B5 98 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 PDE6GP18545 87 aa9.04□□□□□ -0.96
SHOX2-205ENST00000490689 MUC3AQ02505 3323 aa9.03□□□□□ -0.96
SHOX2-205ENST00000490689 Q8IZM0 81 aa9.03□□□□□ -0.96
SHOX2-205ENST00000490689 SPART-AS1P0CW21 52 aa9.03□□□□□ -0.96
SHOX2-205ENST00000490689 RMI2Q96E14 147 aa9.03□□□□□ -0.96
SHOX2-205ENST00000490689 GCN1Q92616 2671 aaKnown RBP9.03□□□□□ -0.96
SHOX2-205ENST00000490689 NBEAL2Q6ZNJ1 2754 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 PRR4Q16378 134 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 C6orf223Q8N319 242 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 Q8N3U1 123 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 UBE2BP63146 152 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 FHL2Q14192 279 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 C9orf129Q5T035 196 aaKnown RBP9.02□□□□□ -0.97
SHOX2-205ENST00000490689 CYSRT1A8MQ03 144 aa9.02□□□□□ -0.97
SHOX2-205ENST00000490689 LRCOL1A6NCL2 159 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 KRTAP10-9P60411 292 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 LINC01006Q8NI28 216 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 ITPR1Q14643 2758 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 DMDP11532 3685 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 ETDCA0A1B0GVM5 59 aa9.01□□□□□ -0.97
SHOX2-205ENST00000490689 FLNAP21333 2647 aaKnown RBP9□□□□□ -0.97
SHOX2-205ENST00000490689 TRAV7A0A075B6U4 112 aa9□□□□□ -0.97
SHOX2-205ENST00000490689 TRBV10-3A0A0K0K1G6 114 aa8.99□□□□□ -0.97
SHOX2-205ENST00000490689 CELA1Q9UNI1 258 aa8.99□□□□□ -0.97
SHOX2-205ENST00000490689 NDUFC2-KCTD14E9PQ53 114 aa8.98□□□□□ -0.97
SHOX2-205ENST00000490689 Q8N9L7 120 aa8.98□□□□□ -0.97
SHOX2-205ENST00000490689 Q6ZVQ6 151 aa8.98□□□□□ -0.97
SHOX2-205ENST00000490689 LINC01561Q8N1V8 128 aa8.98□□□□□ -0.97
SHOX2-205ENST00000490689 MIFP14174 115 aa8.97□□□□□ -0.97
SHOX2-205ENST00000490689 LINC01547P58512 204 aaPredicted RBP8.97□□□□□ -0.97
SHOX2-205ENST00000490689 ZNF73O43830 326 aaPredicted RBP8.96□□□□□ -0.97
SHOX2-205ENST00000490689 SMIM26A0A096LP01 95 aa8.95□□□□□ -0.98
SHOX2-205ENST00000490689 SERP1Q9Y6X1 66 aa8.95□□□□□ -0.98
SHOX2-205ENST00000490689 LAMA5O15230 3695 aa8.95□□□□□ -0.98
SHOX2-205ENST00000490689 LINC00575Q6W349 94 aa8.94□□□□□ -0.98
SHOX2-205ENST00000490689 COX17Q14061 63 aa8.93□□□□□ -0.98
SHOX2-205ENST00000490689 FAM19A3Q7Z5A8 133 aa8.93□□□□□ -0.98
SHOX2-205ENST00000490689 FAM104AQ969W3 186 aa8.93□□□□□ -0.98
SHOX2-205ENST00000490689 H3BQ85 93 aa8.93□□□□□ -0.98
SHOX2-205ENST00000490689 ITPR3Q14573 2671 aa8.93□□□□□ -0.98
SHOX2-205ENST00000490689 FLNCQ14315 2725 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms