RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 Q8IZM0 81 aa7.36□□□□□ -1.23
CPSF3-204ENST00000489403 Q8N8P6 123 aa7.36□□□□□ -1.23
CPSF3-204ENST00000489403 C6orf226Q5I0X4 101 aa7.35□□□□□ -1.23
CPSF3-204ENST00000489403 VCX2Q9H322 139 aa7.35□□□□□ -1.23
CPSF3-204ENST00000489403 XAGE1AQ9HD64 81 aa7.35□□□□□ -1.23
CPSF3-204ENST00000489403 A0A1B0GVG6 124 aa7.34□□□□□ -1.23
CPSF3-204ENST00000489403 IGIPA6NJ69 53 aa7.34□□□□□ -1.23
CPSF3-204ENST00000489403 NPSP0C0P6 89 aa7.34□□□□□ -1.23
CPSF3-204ENST00000489403 ORMDL2Q53FV1 153 aa7.34□□□□□ -1.23
CPSF3-204ENST00000489403 ALKBH7Q9BT30 221 aaPredicted RBP7.34□□□□□ -1.23
CPSF3-204ENST00000489403 CTDSP1Q9GZU7 261 aa7.34□□□□□ -1.23
CPSF3-204ENST00000489403 A0A087X002 238 aa7.33□□□□□ -1.24
CPSF3-204ENST00000489403 LBHQ53QV2 105 aaPredicted RBP7.33□□□□□ -1.24
CPSF3-204ENST00000489403 F8VRH5 84 aa7.32□□□□□ -1.24
CPSF3-204ENST00000489403 TSPAN13O95857 204 aa7.32□□□□□ -1.24
CPSF3-204ENST00000489403 HERVK_113P63121 156 aa7.32□□□□□ -1.24
CPSF3-204ENST00000489403 MRPL55Q7Z7F7 128 aaKnown RBP7.32□□□□□ -1.24
CPSF3-204ENST00000489403 TP73-AS1Q9UF72 201 aa7.32□□□□□ -1.24
CPSF3-204ENST00000489403 CDKN2A-AS1Q9UH64 79 aa7.32□□□□□ -1.24
CPSF3-204ENST00000489403 K7EMI3 77 aa7.31□□□□□ -1.24
CPSF3-204ENST00000489403 SEC11AP67812 179 aa7.31□□□□□ -1.24
CPSF3-204ENST00000489403 BCE1O60756 84 aa7.3□□□□□ -1.24
CPSF3-204ENST00000489403 CXCL5P42830 114 aa7.3□□□□□ -1.24
CPSF3-204ENST00000489403 RPL28P46779 137 aaKnown RBP7.3□□□□□ -1.24
CPSF3-204ENST00000489403 ANAPC16Q96DE5 110 aa7.3□□□□□ -1.24
CPSF3-204ENST00000489403 TIMM17AQ99595 171 aa7.3□□□□□ -1.24
CPSF3-204ENST00000489403 NXT2Q9NPJ8 142 aaKnown RBP7.3□□□□□ -1.24
CPSF3-204ENST00000489403 SMIM1B2RUZ4 78 aa7.29□□□□□ -1.24
CPSF3-204ENST00000489403 PNRC1Q12796 327 aaPredicted RBP7.29□□□□□ -1.24
CPSF3-204ENST00000489403 PAPPA-AS1Q5QFB9 102 aa7.29□□□□□ -1.24
CPSF3-204ENST00000489403 TYMSOSQ8TAI1 123 aa7.29□□□□□ -1.24
CPSF3-204ENST00000489403 TOMM6Q96B49 74 aa7.29□□□□□ -1.24
CPSF3-204ENST00000489403 LINC00167Q96N53 147 aa7.29□□□□□ -1.24
CPSF3-204ENST00000489403 GEMIN7Q9H840 131 aaKnown RBP7.29□□□□□ -1.24
CPSF3-204ENST00000489403 A0A0U1RQV1 116 aa7.28□□□□□ -1.24
CPSF3-204ENST00000489403 RPL37AP8A6NKH3 93 aa7.28□□□□□ -1.24
CPSF3-204ENST00000489403 MT-ND4LP03901 98 aa7.28□□□□□ -1.24
CPSF3-204ENST00000489403 CRYGAP11844 174 aa7.28□□□□□ -1.24
CPSF3-204ENST00000489403 EIF4EBP3O60516 100 aaPredicted RBP7.27□□□□□ -1.25
CPSF3-204ENST00000489403 ANAPC11Q9NYG5 84 aa7.27□□□□□ -1.25
CPSF3-204ENST00000489403 GAGE10A6NGK3 116 aa7.26□□□□□ -1.25
CPSF3-204ENST00000489403 G0S2P27469 103 aa7.26□□□□□ -1.25
CPSF3-204ENST00000489403 KRTAP13-2Q52LG2 175 aa7.26□□□□□ -1.25
CPSF3-204ENST00000489403 COX7B2Q8TF08 81 aa7.26□□□□□ -1.25
CPSF3-204ENST00000489403 IGLV5-37A0A075B6J1 123 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 IGLV5-45A0A087WSX0 123 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 TINCRA0A1B0GVN0 87 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 KIAA1644Q3SXP7 199 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 PDZD11Q5EBL8 140 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 ERASQ7Z444 233 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 KRTAP13-1Q8IUC0 172 aa7.25□□□□□ -1.25
CPSF3-204ENST00000489403 ADCYAP1P18509 176 aa7.24□□□□□ -1.25
CPSF3-204ENST00000489403 SCGB3A1Q96QR1 104 aa7.24□□□□□ -1.25
CPSF3-204ENST00000489403 FAT4Q6V0I7 4981 aa7.23□□□□□ -1.25
CPSF3-204ENST00000489403 UBE2AP49459 152 aa7.23□□□□□ -1.25
CPSF3-204ENST00000489403 RAB5BP61020 215 aa7.23□□□□□ -1.25
CPSF3-204ENST00000489403 KRTAP9-2Q9BYQ4 174 aa7.23□□□□□ -1.25
CPSF3-204ENST00000489403 SPINK8P0C7L1 97 aa7.22□□□□□ -1.25
CPSF3-204ENST00000489403 NKAPP1Q8N9T2 125 aa7.22□□□□□ -1.25
CPSF3-204ENST00000489403 RETNLBQ9BQ08 111 aa7.22□□□□□ -1.25
CPSF3-204ENST00000489403 MUC17Q685J3 4493 aa7.21□□□□□ -1.26
CPSF3-204ENST00000489403 IGKV2-28A0A075B6P5 120 aa7.21□□□□□ -1.26
CPSF3-204ENST00000489403 SCO1O75880 301 aa7.21□□□□□ -1.26
CPSF3-204ENST00000489403 IGKV2D-28P01615 120 aa7.21□□□□□ -1.26
CPSF3-204ENST00000489403 LINC01546A6NGU7 62 aa7.2□□□□□ -1.26
CPSF3-204ENST00000489403 FAM229BQ4G0N7 80 aa7.2□□□□□ -1.26
CPSF3-204ENST00000489403 LINC00304Q8N9R0 145 aa7.2□□□□□ -1.26
CPSF3-204ENST00000489403 MRPL18Q9H0U6 180 aaKnown RBP7.2□□□□□ -1.26
CPSF3-204ENST00000489403 CST9LQ9H4G1 147 aa7.2□□□□□ -1.26
CPSF3-204ENST00000489403 LINC01549A6NIU2 74 aa7.18□□□□□ -1.26
CPSF3-204ENST00000489403 ATP5LO75964 103 aa7.18□□□□□ -1.26
CPSF3-204ENST00000489403 PRLHP81277 87 aa7.18□□□□□ -1.26
CPSF3-204ENST00000489403 PMVKQ15126 192 aa7.18□□□□□ -1.26
CPSF3-204ENST00000489403 VPREB1P12018 145 aa7.17□□□□□ -1.26
CPSF3-204ENST00000489403 PFN2P35080 140 aa7.17□□□□□ -1.26
CPSF3-204ENST00000489403 RAB14P61106 215 aa7.17□□□□□ -1.26
CPSF3-204ENST00000489403 TRAV9-1A0A075B6T8 112 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 IGKV2D-26A0A0A0MRZ7 120 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 H3BRM9 83 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 TPRXLQ17RH7 258 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 FAM19A1Q7Z5A9 133 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 TMEM126AQ9H061 195 aa7.16□□□□□ -1.26
CPSF3-204ENST00000489403 IGLV5-39A0A0G2JS06 123 aa7.15□□□□□ -1.26
CPSF3-204ENST00000489403 TMEM238C9JI98 176 aa7.15□□□□□ -1.26
CPSF3-204ENST00000489403 IGLC3P0DOY3 106 aa7.15□□□□□ -1.26
CPSF3-204ENST00000489403 GNB1LQ9BYB4 327 aa7.15□□□□□ -1.26
CPSF3-204ENST00000489403 CDIP1Q9H305 208 aa7.15□□□□□ -1.26
CPSF3-204ENST00000489403 M0R378 163 aa7.14□□□□□ -1.27
CPSF3-204ENST00000489403 ZNF22P17026 224 aaPredicted RBP7.14□□□□□ -1.27
CPSF3-204ENST00000489403 FA2HQ7L5A8 372 aa7.14□□□□□ -1.27
CPSF3-204ENST00000489403 Q8NDZ9 215 aa7.14□□□□□ -1.27
CPSF3-204ENST00000489403 SND1-IT1Q9HBX3 110 aa7.14□□□□□ -1.27
CPSF3-204ENST00000489403 ERG28Q9UKR5 140 aa7.14□□□□□ -1.27
CPSF3-204ENST00000489403 IGLV7-46A0A075B6I9 117 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 CTAG1AP78358 180 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 CLLU1Q5K131 121 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 C3orf22Q8N5N4 141 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 PLEKHB2Q96CS7 222 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 SMCO4Q9NRQ5 59 aa7.13□□□□□ -1.27
CPSF3-204ENST00000489403 A0A096LNJ9 63 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms