RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 GNB1LQ9BYB4 327 aa14.05□□□□□ -0.16
COL9A3-213ENST00000489045 CDKN2A-AS1Q9UH64 79 aa14.05□□□□□ -0.16
COL9A3-213ENST00000489045 IGLV7-43P04211 117 aa14.04□□□□□ -0.16
COL9A3-213ENST00000489045 ERASQ7Z444 233 aa14.04□□□□□ -0.16
COL9A3-213ENST00000489045 COMMD7Q86VX2 200 aa14.04□□□□□ -0.16
COL9A3-213ENST00000489045 SCGB3A1Q96QR1 104 aa14.04□□□□□ -0.16
COL9A3-213ENST00000489045 ALKBH7Q9BT30 221 aaPredicted RBP14.04□□□□□ -0.16
COL9A3-213ENST00000489045 GEMIN7Q9H840 131 aaKnown RBP14.04□□□□□ -0.16
COL9A3-213ENST00000489045 LINC01546A6NGU7 62 aa14.01□□□□□ -0.17
COL9A3-213ENST00000489045 UBE2BP63146 152 aa14.01□□□□□ -0.17
COL9A3-213ENST00000489045 DIRC1Q969H9 104 aa14□□□□□ -0.17
COL9A3-213ENST00000489045 COX19Q49B96 90 aa13.99□□□□□ -0.17
COL9A3-213ENST00000489045 LINC00469Q8N7U9 141 aa13.99□□□□□ -0.17
COL9A3-213ENST00000489045 C10orf91Q5T1B1 145 aa13.98□□□□□ -0.17
COL9A3-213ENST00000489045 MRPL18Q9H0U6 180 aaKnown RBP13.98□□□□□ -0.17
COL9A3-213ENST00000489045 LINC01549A6NIU2 74 aa13.97□□□□□ -0.17
COL9A3-213ENST00000489045 F8VRH5 84 aa13.97□□□□□ -0.17
COL9A3-213ENST00000489045 TINCRA0A1B0GVN0 87 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 SMIM1B2RUZ4 78 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 H0Y9J4 135 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 FABP9Q0Z7S8 132 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 RHEBQ15382 184 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 FA2HQ7L5A8 372 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 RPS10P5Q9NQ39 176 aa13.96□□□□□ -0.17
COL9A3-213ENST00000489045 CXCL5P42830 114 aa13.95□□□□□ -0.18
COL9A3-213ENST00000489045 XAGE1AQ9HD64 81 aa13.95□□□□□ -0.18
COL9A3-213ENST00000489045 CARHSP1Q9Y2V2 147 aaKnown RBP13.95□□□□□ -0.18
COL9A3-213ENST00000489045 LRP2P98164 4655 aa13.95□□□□□ -0.18
COL9A3-213ENST00000489045 IGLV5-45A0A087WSX0 123 aa13.94□□□□□ -0.18
COL9A3-213ENST00000489045 CST9LQ9H4G1 147 aa13.94□□□□□ -0.18
COL9A3-213ENST00000489045 SMCO4Q9NRQ5 59 aa13.94□□□□□ -0.18
COL9A3-213ENST00000489045 PDZD11Q5EBL8 140 aa13.93□□□□□ -0.18
COL9A3-213ENST00000489045 COX7B2Q8TF08 81 aa13.92□□□□□ -0.18
COL9A3-213ENST00000489045 PMVKQ15126 192 aa13.91□□□□□ -0.18
COL9A3-213ENST00000489045 PRR26Q8N8Z3 221 aa13.91□□□□□ -0.18
COL9A3-213ENST00000489045 C22orf24Q9Y442 160 aa13.91□□□□□ -0.18
COL9A3-213ENST00000489045 SPINK8P0C7L1 97 aa13.9□□□□□ -0.18
COL9A3-213ENST00000489045 KRTAP1-4P0C5Y4 121 aa13.86□□□□□ -0.19
COL9A3-213ENST00000489045 LBHQ53QV2 105 aaPredicted RBP13.86□□□□□ -0.19
COL9A3-213ENST00000489045 A0A096LNJ9 63 aa13.85□□□□□ -0.19
COL9A3-213ENST00000489045 URB1-AS1Q96HZ7 61 aa13.85□□□□□ -0.19
COL9A3-213ENST00000489045 TRAPPC1Q9Y5R8 145 aa13.85□□□□□ -0.19
COL9A3-213ENST00000489045 NUPR1O60356 82 aa13.84□□□□□ -0.19
COL9A3-213ENST00000489045 MRPL55Q7Z7F7 128 aaKnown RBP13.84□□□□□ -0.19
COL9A3-213ENST00000489045 C18orf32Q8TCD1 76 aa13.84□□□□□ -0.19
COL9A3-213ENST00000489045 TP73-AS1Q9UF72 201 aa13.84□□□□□ -0.19
COL9A3-213ENST00000489045 IGLV1-50A0A075B6I6 118 aa13.83□□□□□ -0.2
COL9A3-213ENST00000489045 H3BRM9 83 aa13.83□□□□□ -0.2
COL9A3-213ENST00000489045 ZNF861PO60384 105 aa13.82□□□□□ -0.2
COL9A3-213ENST00000489045 IGLC3P0DOY3 106 aa13.82□□□□□ -0.2
COL9A3-213ENST00000489045 NDUFA6P56556 154 aa13.82□□□□□ -0.2
COL9A3-213ENST00000489045 APOC3P02656 99 aa13.81□□□□□ -0.2
COL9A3-213ENST00000489045 LINC00614P0C842 121 aa13.81□□□□□ -0.2
COL9A3-213ENST00000489045 RAB5BP61020 215 aa13.81□□□□□ -0.2
COL9A3-213ENST00000489045 HBDP02042 147 aa13.8□□□□□ -0.2
COL9A3-213ENST00000489045 PMCHL1Q16048 86 aa13.8□□□□□ -0.2
COL9A3-213ENST00000489045 IGLV5-39A0A0G2JS06 123 aa13.78□□□□□ -0.2
COL9A3-213ENST00000489045 ATP5LO75964 103 aa13.78□□□□□ -0.2
COL9A3-213ENST00000489045 ZNF22P17026 224 aaPredicted RBP13.78□□□□□ -0.2
COL9A3-213ENST00000489045 LINC00167Q96N53 147 aa13.78□□□□□ -0.2
COL9A3-213ENST00000489045 RPL37AP8A6NKH3 93 aa13.76□□□□□ -0.21
COL9A3-213ENST00000489045 SNAPINO95295 136 aa13.76□□□□□ -0.21
COL9A3-213ENST00000489045 GAGE10A6NGK3 116 aa13.75□□□□□ -0.21
COL9A3-213ENST00000489045 NDUFA5Q16718 116 aa13.75□□□□□ -0.21
COL9A3-213ENST00000489045 SVBPQ8N300 66 aa13.75□□□□□ -0.21
COL9A3-213ENST00000489045 IGLV5-37A0A075B6J1 123 aa13.74□□□□□ -0.21
COL9A3-213ENST00000489045 BCE1O60756 84 aa13.74□□□□□ -0.21
COL9A3-213ENST00000489045 RPL13AP40429 203 aaKnown RBP13.74□□□□□ -0.21
COL9A3-213ENST00000489045 PFN2P35080 140 aa13.73□□□□□ -0.21
COL9A3-213ENST00000489045 RPL28P46779 137 aaKnown RBP13.73□□□□□ -0.21
COL9A3-213ENST00000489045 NKAPP1Q8N9T2 125 aa13.73□□□□□ -0.21
COL9A3-213ENST00000489045 RNF213Q63HN8 5207 aa13.72□□□□□ -0.21
COL9A3-213ENST00000489045 C11orf86A6NJI1 115 aa13.71□□□□□ -0.21
COL9A3-213ENST00000489045 BAGE3Q86Y29 109 aa13.71□□□□□ -0.21
COL9A3-213ENST00000489045 ERG28Q9UKR5 140 aa13.7□□□□□ -0.22
COL9A3-213ENST00000489045 TMEM170BQ5T4T1 132 aa13.69□□□□□ -0.22
COL9A3-213ENST00000489045 SCO1O75880 301 aa13.68□□□□□ -0.22
COL9A3-213ENST00000489045 YPEL4Q96NS1 127 aa13.68□□□□□ -0.22
COL9A3-213ENST00000489045 LPAP08519 4548 aa13.67□□□□□ -0.22
COL9A3-213ENST00000489045 ZNF625Q96I27 306 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-213ENST00000489045 SND1-IT1Q9HBX3 110 aa13.66□□□□□ -0.22
COL9A3-213ENST00000489045 IGKV2-28A0A075B6P5 120 aa13.65□□□□□ -0.22
COL9A3-213ENST00000489045 IGKV2D-28P01615 120 aa13.65□□□□□ -0.22
COL9A3-213ENST00000489045 COX17Q14061 63 aa13.65□□□□□ -0.22
COL9A3-213ENST00000489045 CHTOPQ9Y3Y2 248 aaKnown RBP13.65□□□□□ -0.22
COL9A3-213ENST00000489045 VPREB1P12018 145 aa13.64□□□□□ -0.23
COL9A3-213ENST00000489045 A0A087X002 238 aa13.63□□□□□ -0.23
COL9A3-213ENST00000489045 UBE2AP49459 152 aa13.63□□□□□ -0.23
COL9A3-213ENST00000489045 KRTAP13-1Q8IUC0 172 aa13.63□□□□□ -0.23
COL9A3-213ENST00000489045 CHCHD1Q96BP2 118 aaKnown RBP13.63□□□□□ -0.23
COL9A3-213ENST00000489045 SFTA2Q6UW10 78 aa13.62□□□□□ -0.23
COL9A3-213ENST00000489045 TRAV12-1A0A0B4J245 112 aa13.6□□□□□ -0.23
COL9A3-213ENST00000489045 RPL24P83731 157 aaKnown RBP13.6□□□□□ -0.23
COL9A3-213ENST00000489045 IFI27L1Q96BM0 104 aa13.6□□□□□ -0.23
COL9A3-213ENST00000489045 CRYGAP11844 174 aa13.59□□□□□ -0.23
COL9A3-213ENST00000489045 Q8NDZ9 215 aa13.59□□□□□ -0.23
COL9A3-213ENST00000489045 TMEM223A0PJW6 202 aa13.58□□□□□ -0.24
COL9A3-213ENST00000489045 CBLN2Q8IUK8 224 aa13.58□□□□□ -0.24
COL9A3-213ENST00000489045 ANAPC11Q9NYG5 84 aa13.58□□□□□ -0.24
COL9A3-213ENST00000489045 TMEM238C9JI98 176 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms