RNA–Protein interactions for RNA: ENST00000484986.1

PTPRN-215, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 545 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-215ENST00000484986 ZNF861PO60384 105 aa13.26□□□□□ -0.29
PTPRN-215ENST00000484986 SEC11AP67812 179 aa13.26□□□□□ -0.29
PTPRN-215ENST00000484986 LBHQ53QV2 105 aaPredicted RBP13.26□□□□□ -0.29
PTPRN-215ENST00000484986 PAPPA-AS1Q5QFB9 102 aa13.26□□□□□ -0.29
PTPRN-215ENST00000484986 LINC00173Q6ZV60 143 aa13.26□□□□□ -0.29
PTPRN-215ENST00000484986 G0S2P27469 103 aa13.25□□□□□ -0.29
PTPRN-215ENST00000484986 C10orf91Q5T1B1 145 aa13.25□□□□□ -0.29
PTPRN-215ENST00000484986 ZC2HC1BQ5TFG8 222 aa13.25□□□□□ -0.29
PTPRN-215ENST00000484986 FAM19A3Q7Z5A8 133 aa13.25□□□□□ -0.29
PTPRN-215ENST00000484986 ALKBH7Q9BT30 221 aaPredicted RBP13.25□□□□□ -0.29
PTPRN-215ENST00000484986 IGIPA6NJ69 53 aa13.24□□□□□ -0.29
PTPRN-215ENST00000484986 HERVK_113P63121 156 aa13.24□□□□□ -0.29
PTPRN-215ENST00000484986 C22orf24Q9Y442 160 aa13.24□□□□□ -0.29
PTPRN-215ENST00000484986 S100PP25815 95 aa13.23□□□□□ -0.29
PTPRN-215ENST00000484986 NDUFA5Q16718 116 aa13.23□□□□□ -0.29
PTPRN-215ENST00000484986 NXT2Q9NPJ8 142 aaKnown RBP13.23□□□□□ -0.29
PTPRN-215ENST00000484986 RPS10P5Q9NQ39 176 aa13.23□□□□□ -0.29
PTPRN-215ENST00000484986 APOC3P02656 99 aa13.22□□□□□ -0.29
PTPRN-215ENST00000484986 PRR4Q16378 134 aa13.22□□□□□ -0.29
PTPRN-215ENST00000484986 LINC00469Q8N7U9 141 aa13.22□□□□□ -0.29
PTPRN-215ENST00000484986 F8VRH5 84 aa13.21□□□□□ -0.29
PTPRN-215ENST00000484986 RHEBQ15382 184 aa13.21□□□□□ -0.29
PTPRN-215ENST00000484986 GEMIN7Q9H840 131 aaKnown RBP13.21□□□□□ -0.29
PTPRN-215ENST00000484986 XAGE1AQ9HD64 81 aa13.21□□□□□ -0.29
PTPRN-215ENST00000484986 TP73-AS1Q9UF72 201 aa13.2□□□□□ -0.3
PTPRN-215ENST00000484986 CXCL5P42830 114 aa13.19□□□□□ -0.3
PTPRN-215ENST00000484986 CDKN2A-AS1Q9UH64 79 aa13.19□□□□□ -0.3
PTPRN-215ENST00000484986 TIMM17AQ99595 171 aa13.18□□□□□ -0.3
PTPRN-215ENST00000484986 TRAV9-1A0A075B6T8 112 aa13.17□□□□□ -0.3
PTPRN-215ENST00000484986 RPL28P46779 137 aaKnown RBP13.17□□□□□ -0.3
PTPRN-215ENST00000484986 MRPL55Q7Z7F7 128 aaKnown RBP13.17□□□□□ -0.3
PTPRN-215ENST00000484986 SNAPINO95295 136 aa13.16□□□□□ -0.3
PTPRN-215ENST00000484986 SVBPQ8N300 66 aa13.16□□□□□ -0.3
PTPRN-215ENST00000484986 TOMM6Q96B49 74 aa13.15□□□□□ -0.3
PTPRN-215ENST00000484986 MUC2Q02817 5179 aa13.15□□□□□ -0.3
PTPRN-215ENST00000484986 BCE1O60756 84 aa13.14□□□□□ -0.31
PTPRN-215ENST00000484986 ERASQ7Z444 233 aa13.12□□□□□ -0.31
PTPRN-215ENST00000484986 SLC7A5P1Q8MH63 180 aa13.12□□□□□ -0.31
PTPRN-215ENST00000484986 LINC01549A6NIU2 74 aa13.1□□□□□ -0.31
PTPRN-215ENST00000484986 CRYGAP11844 174 aa13.1□□□□□ -0.31
PTPRN-215ENST00000484986 PDZD11Q5EBL8 140 aa13.1□□□□□ -0.31
PTPRN-215ENST00000484986 SCGB3A1Q96QR1 104 aa13.1□□□□□ -0.31
PTPRN-215ENST00000484986 TINCRA0A1B0GVN0 87 aa13.09□□□□□ -0.31
PTPRN-215ENST00000484986 SMIM1B2RUZ4 78 aa13.09□□□□□ -0.31
PTPRN-215ENST00000484986 TSPAN13O95857 204 aa13.09□□□□□ -0.31
PTPRN-215ENST00000484986 COX19Q49B96 90 aa13.09□□□□□ -0.31
PTPRN-215ENST00000484986 KIAA1644Q3SXP7 199 aa13.08□□□□□ -0.32
PTPRN-215ENST00000484986 COX7B2Q8TF08 81 aa13.08□□□□□ -0.32
PTPRN-215ENST00000484986 GNB1LQ9BYB4 327 aa13.08□□□□□ -0.32
PTPRN-215ENST00000484986 A0A0U1RQV1 116 aa13.07□□□□□ -0.32
PTPRN-215ENST00000484986 TYMSOSQ8TAI1 123 aa13.07□□□□□ -0.32
PTPRN-215ENST00000484986 LINC00167Q96N53 147 aa13.07□□□□□ -0.32
PTPRN-215ENST00000484986 IGLV5-45A0A087WSX0 123 aa13.06□□□□□ -0.32
PTPRN-215ENST00000484986 A0A087X002 238 aa13.06□□□□□ -0.32
PTPRN-215ENST00000484986 RPL37AP8A6NKH3 93 aa13.06□□□□□ -0.32
PTPRN-215ENST00000484986 FABP9Q0Z7S8 132 aa13.04□□□□□ -0.32
PTPRN-215ENST00000484986 IGLV5-37A0A075B6J1 123 aa13.03□□□□□ -0.32
PTPRN-215ENST00000484986 NKAPP1Q8N9T2 125 aa13.03□□□□□ -0.32
PTPRN-215ENST00000484986 MRPL18Q9H0U6 180 aaKnown RBP13.03□□□□□ -0.32
PTPRN-215ENST00000484986 GAGE10A6NGK3 116 aa13.02□□□□□ -0.33
PTPRN-215ENST00000484986 CST9LQ9H4G1 147 aa13.02□□□□□ -0.33
PTPRN-215ENST00000484986 UBE2AP49459 152 aa13.01□□□□□ -0.33
PTPRN-215ENST00000484986 RAB5BP61020 215 aa13.01□□□□□ -0.33
PTPRN-215ENST00000484986 LINC01546A6NGU7 62 aa13□□□□□ -0.33
PTPRN-215ENST00000484986 H3BRM9 83 aa13□□□□□ -0.33
PTPRN-215ENST00000484986 ATP5LO75964 103 aa13□□□□□ -0.33
PTPRN-215ENST00000484986 TRAPPC1Q9Y5R8 145 aa13□□□□□ -0.33
PTPRN-215ENST00000484986 SPINK8P0C7L1 97 aa12.99□□□□□ -0.33
PTPRN-215ENST00000484986 PMVKQ15126 192 aa12.99□□□□□ -0.33
PTPRN-215ENST00000484986 FAM229BQ4G0N7 80 aa12.98□□□□□ -0.33
PTPRN-215ENST00000484986 KRTAP13-1Q8IUC0 172 aa12.98□□□□□ -0.33
PTPRN-215ENST00000484986 SMCO4Q9NRQ5 59 aa12.97□□□□□ -0.33
PTPRN-215ENST00000484986 ANAPC11Q9NYG5 84 aa12.95□□□□□ -0.34
PTPRN-215ENST00000484986 FA2HQ7L5A8 372 aa12.94□□□□□ -0.34
PTPRN-215ENST00000484986 CBLN2Q8IUK8 224 aa12.94□□□□□ -0.34
PTPRN-215ENST00000484986 IGKV2-28A0A075B6P5 120 aa12.93□□□□□ -0.34
PTPRN-215ENST00000484986 IGKV2D-28P01615 120 aa12.93□□□□□ -0.34
PTPRN-215ENST00000484986 KRTAP13-2Q52LG2 175 aa12.93□□□□□ -0.34
PTPRN-215ENST00000484986 LINC00304Q8N9R0 145 aa12.92□□□□□ -0.34
PTPRN-215ENST00000484986 IGKV2D-26A0A0A0MRZ7 120 aa12.91□□□□□ -0.34
PTPRN-215ENST00000484986 PFN2P35080 140 aa12.91□□□□□ -0.34
PTPRN-215ENST00000484986 CTAG1AP78358 180 aa12.9□□□□□ -0.34
PTPRN-215ENST00000484986 RPL24P83731 157 aaKnown RBP12.9□□□□□ -0.34
PTPRN-215ENST00000484986 YPEL4Q96NS1 127 aa12.9□□□□□ -0.34
PTPRN-215ENST00000484986 IGLV5-39A0A0G2JS06 123 aa12.89□□□□□ -0.35
PTPRN-215ENST00000484986 IGLC3P0DOY3 106 aa12.89□□□□□ -0.35
PTPRN-215ENST00000484986 COX17Q14061 63 aa12.89□□□□□ -0.35
PTPRN-215ENST00000484986 SCO1O75880 301 aa12.87□□□□□ -0.35
PTPRN-215ENST00000484986 FAM19A1Q7Z5A9 133 aa12.87□□□□□ -0.35
PTPRN-215ENST00000484986 TMEM126AQ9H061 195 aa12.87□□□□□ -0.35
PTPRN-215ENST00000484986 SND1-IT1Q9HBX3 110 aa12.87□□□□□ -0.35
PTPRN-215ENST00000484986 ERG28Q9UKR5 140 aa12.87□□□□□ -0.35
PTPRN-215ENST00000484986 VPREB1P12018 145 aa12.86□□□□□ -0.35
PTPRN-215ENST00000484986 NDUFA6P56556 154 aa12.86□□□□□ -0.35
PTPRN-215ENST00000484986 PRLHP81277 87 aa12.86□□□□□ -0.35
PTPRN-215ENST00000484986 SFTA2Q6UW10 78 aa12.86□□□□□ -0.35
PTPRN-215ENST00000484986 C18orf32Q8TCD1 76 aa12.85□□□□□ -0.35
PTPRN-215ENST00000484986 RETNLBQ9BQ08 111 aa12.85□□□□□ -0.35
PTPRN-215ENST00000484986 TMEM238C9JI98 176 aa12.83□□□□□ -0.36
PTPRN-215ENST00000484986 LINC00614P0C842 121 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms