RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 CRIP1P50238 77 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 AP3S2P59780 193 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 VBP1P61758 197 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 LSM3P62310 102 aaKnown RBP2.19□□□□□ -2.06
VPS50-214ENST00000477935 SPAG11BQ08648 103 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 CNBD2Q96M20 576 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 PACRGQ96M98 296 aaPredicted RBP2.19□□□□□ -2.06
VPS50-214ENST00000477935 AP1S3Q96PC3 154 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 TP73-AS1Q9UF72 201 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 ARL2-SNX15V9GYD0 113 aa2.19□□□□□ -2.06
VPS50-214ENST00000477935 TMSB15BA0A087X1C1 80 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 NDUFC2-KCTD14E9PQ53 114 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 SH2D1AO60880 128 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 NTF3P20783 257 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 RPS20P60866 119 aaKnown RBP2.18□□□□□ -2.06
VPS50-214ENST00000477935 LYZL1Q6UWQ5 148 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 KRTAP13-1Q8IUC0 172 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 OR10AG1Q8NH19 301 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 GNB1LQ9BYB4 327 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 WDR61Q9GZS3 305 aaKnown RBP2.18□□□□□ -2.06
VPS50-214ENST00000477935 VCX3BQ9H321 246 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 CDC42SE2Q9NRR3 84 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 LSM5Q9Y4Y9 91 aaKnown RBP2.18□□□□□ -2.06
VPS50-214ENST00000477935 ALG5Q9Y673 324 aa2.18□□□□□ -2.06
VPS50-214ENST00000477935 TRBV30A0A0K0K1B3 111 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 RGS5O15539 181 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 APCSP02743 223 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 SMAGPQ0VAQ4 97 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 NEDD8Q15843 81 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 ORMDL2Q53FV1 153 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 MRPL55Q7Z7F7 128 aaKnown RBP2.17□□□□□ -2.06
VPS50-214ENST00000477935 C3orf22Q8N5N4 141 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 HIST1H2BAQ96A08 127 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 TIMM17AQ99595 171 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 NKX6-2Q9C056 277 aaPredicted RBP2.17□□□□□ -2.06
VPS50-214ENST00000477935 C6orf48Q9UBA6 75 aa2.17□□□□□ -2.06
VPS50-214ENST00000477935 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.16□□□□□ -2.06
VPS50-214ENST00000477935 A0A1W2PRE2 83 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 IGSF23A1L1A6 192 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 IGKV2-29A2NJV5 120 aaPredicted RBP2.16□□□□□ -2.06
VPS50-214ENST00000477935 MT2AP02795 61 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 IGKV4-1P06312 121 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 MGPP08493 103 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 NCS1P62166 190 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 Q6Q795 121 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 UNQ6190/PRO20217Q6UXQ8 127 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 C5orf38Q86SI9 138 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 MRPL52Q86TS9 123 aaKnown RBP2.16□□□□□ -2.06
VPS50-214ENST00000477935 TOMM5Q8N4H5 51 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 PLEKHB2Q96CS7 222 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 GEMIN7Q9H840 131 aaKnown RBP2.16□□□□□ -2.06
VPS50-214ENST00000477935 VCX3AQ9NNX9 186 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 TMEM167BQ9NRX6 74 aa2.16□□□□□ -2.06
VPS50-214ENST00000477935 A8MUU9 505 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 ZNF727A8MUV8 499 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 SMKR1H3BMG3 65 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 I3L3M4 83 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 UPK1BO75841 260 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 NDUFB6O95139 128 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 STAG3L2P0CL84 134 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 STAG3L3P0CL85 134 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 TEX261Q6UWH6 196 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 Q86TA4 180 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 SCGB1C1Q8TD33 95 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 ORAOV1Q8WV07 137 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 FMC1Q96HJ9 113 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 KRTAP2-1Q9BYU5 128 aa2.15□□□□□ -2.07
VPS50-214ENST00000477935 FAM25EA8MYX2 175 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 BPY2O14599 106 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 TRGC1P0CF51 173 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 ARL14EPLP0DKL9 152 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 UBE2G2P60604 165 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 SSBP3-AS1Q7Z2R9 100 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 MRAP2Q96G30 205 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 MARVELD1Q9BSK0 173 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 CCDC32Q9BV29 185 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 Q9H521 79 aa2.14□□□□□ -2.07
VPS50-214ENST00000477935 TRAV13-1A0A0B4J241 112 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 MUC21A0A140T8X8 626 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 C20orf202A1L168 122 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 F2Z2F3 143 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 HMGB3O15347 200 aaKnown RBP2.13□□□□□ -2.07
VPS50-214ENST00000477935 CXorf1O96002 111 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 LTAP01374 205 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 MT1FP04733 61 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 LGALS3P17931 250 aaKnown RBP2.13□□□□□ -2.07
VPS50-214ENST00000477935 PMCHP20382 165 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 GCHFRP30047 84 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 UBE2G1P62253 170 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 CBLN2Q8IUK8 224 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 TCEAL7Q9BRU2 100 aa2.13□□□□□ -2.07
VPS50-214ENST00000477935 ZNF706Q9Y5V0 76 aaPredicted RBP2.13□□□□□ -2.07
VPS50-214ENST00000477935 IGHV3OR16-9A0A0B4J2B5 98 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 RAB19A4D1S5 217 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 NAP1L6A6NFF2 107 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 SDHAF1A6NFY7 115 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 IFNA1P01562 189 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 MBP02144 154 aa2.12□□□□□ -2.07
VPS50-214ENST00000477935 S100A9P06702 114 aaKnown RBP2.12□□□□□ -2.07
VPS50-214ENST00000477935 CDC34P49427 236 aaPredicted RBP2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 387.2 ms