RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 USP9XQ93008 2570 aaPredicted RBP1.87□□□□□ -2.11
VPS13D-207ENST00000476169 TRAV12-3A0A0B4J271 114 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 HIGD1CA8MV81 97 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 RPL37AP61513 92 aaKnown RBP1.87□□□□□ -2.11
VPS13D-207ENST00000476169 PKIAP61925 76 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 PCOTHQ58A44 107 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 ODF3Q96PU9 254 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 C22orf24Q9Y442 160 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 PI4KAP42356 2102 aa1.87□□□□□ -2.11
VPS13D-207ENST00000476169 HELZ2Q9BYK8 2649 aaKnown RBP1.87□□□□□ -2.11
VPS13D-207ENST00000476169 IGKV2-40A0A087WW87 121 aaPredicted RBP1.86□□□□□ -2.11
VPS13D-207ENST00000476169 IGKV2D-40P01614 121 aaPredicted RBP1.86□□□□□ -2.11
VPS13D-207ENST00000476169 FXYD4P59646 89 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 KRTAP12-1P59990 96 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 C10orf128Q5T292 105 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 LINC01590Q5TEZ4 76 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 UNQ6190/PRO20217Q6UXQ8 127 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 CYP2G1PQ6ZSU1 146 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 NDUFA11Q86Y39 141 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 OBSCN-AS1Q96MR7 158 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 AQP10Q96PS8 301 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 BPESC1Q9GZL8 116 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 TNRC6AQ8NDV7 1962 aaKnown RBP1.86□□□□□ -2.11
VPS13D-207ENST00000476169 NBASA2RRP1 2371 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 CHD3Q12873 2000 aaKnown RBP1.86□□□□□ -2.11
VPS13D-207ENST00000476169 UNC13CQ8NB66 2214 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 UNC79Q9P2D8 2635 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 COL6A6A6NMZ7 2263 aa1.86□□□□□ -2.11
VPS13D-207ENST00000476169 DSPP15924 2871 aaKnown RBP1.85□□□□□ -2.11
VPS13D-207ENST00000476169 USP9YO00507 2555 aaPredicted RBP1.85□□□□□ -2.11
VPS13D-207ENST00000476169 MYO18BQ8IUG5 2567 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 PIEZO2Q9H5I5 2752 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 TRBV10-3A0A0K0K1G6 114 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 EFNA4P52798 201 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 PRB3Q04118 309 aaPredicted RBP1.85□□□□□ -2.11
VPS13D-207ENST00000476169 TTC9CQ8N5M4 171 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 TTTY10Q9BZA0 68 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 DYNLRB1Q9NP97 96 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 LRRK2Q5S007 2527 aa1.85□□□□□ -2.11
VPS13D-207ENST00000476169 UBR5O95071 2799 aaPredicted RBP1.85□□□□□ -2.11
VPS13D-207ENST00000476169 PTPN13Q12923 2485 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 ASH1LQ9NR48 2969 aaKnown RBP1.84□□□□□ -2.11
VPS13D-207ENST00000476169 SPTBP11277 2137 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 WDR87Q6ZQQ6 2873 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 CSMD1Q96PZ7 3565 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 LOC101927531A0A1B0GV80 90 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 H3BSH0 61 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 CCL8P80075 99 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 C6orf52Q5T4I8 152 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 C5orf38Q86SI9 138 aa1.84□□□□□ -2.11
VPS13D-207ENST00000476169 ZCCHC13Q8WW36 166 aaKnown RBP1.84□□□□□ -2.11
VPS13D-207ENST00000476169 ARFGEF3Q5TH69 2177 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 SPTAN1Q13813 2472 aaKnown RBP1.83□□□□□ -2.12
VPS13D-207ENST00000476169 NAV2Q8IVL1 2488 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 RP1L1Q8IWN7 2480 aaPredicted RBP1.83□□□□□ -2.12
VPS13D-207ENST00000476169 CR1P17927 2039 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 KALRNO60229 2985 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 SNCAP37840 140 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 DEFB108BQ8NET1 73 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 CYSTM1Q9H1C7 97 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 CMC2Q9NRP2 79 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 MED13Q9UHV7 2174 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 BPTFQ12830 3046 aa1.83□□□□□ -2.12
VPS13D-207ENST00000476169 ATMQ13315 3056 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 TENM4Q6N022 2769 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 TRAV13-2A0A0B4J235 113 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 UBE2L5PA0A1B0GUS4 154 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 IQCF6A8MYZ5 107 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 HCG22E2RYF7 251 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 M0R135 149 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 GNGT2O14610 69 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 SMIM11AP58511 58 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 UBE2L3P68036 154 aaKnown RBP1.82□□□□□ -2.12
VPS13D-207ENST00000476169 COL5A1-AS1Q5SY13 56 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 XAF1Q6GPH4 301 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 DPH3P1Q9H4G8 78 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 FAIMQ9NVQ4 179 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 AP4S1Q9Y587 144 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 POLQO75417 2590 aa1.82□□□□□ -2.12
VPS13D-207ENST00000476169 GCN1Q92616 2671 aaKnown RBP1.82□□□□□ -2.12
VPS13D-207ENST00000476169 COL12A1Q99715 3063 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 MAST4O15021 2626 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 TEX49A0A1B0GTD5 131 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 IGKV2-29A2NJV5 120 aaPredicted RBP1.81□□□□□ -2.12
VPS13D-207ENST00000476169 TMEM262E9PQX1 116 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 SSSCA1O60232 199 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 GYPAP02724 150 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 ATP5EP56381 51 aaPredicted RBP1.81□□□□□ -2.12
VPS13D-207ENST00000476169 KRTAP21-3Q3LHN1 58 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 KRTAP5-5Q701N2 237 aaPredicted RBP1.81□□□□□ -2.12
VPS13D-207ENST00000476169 EXPH5Q8NEV8 1989 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 INTS1Q8N201 2190 aaKnown RBP1.81□□□□□ -2.12
VPS13D-207ENST00000476169 MED12Q93074 2177 aa1.81□□□□□ -2.12
VPS13D-207ENST00000476169 DOPEY2Q9Y3R5 2298 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 BOD1L1Q8NFC6 3051 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 NBPF19A0A087WUL8 3843 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 ABCA12Q86UK0 2595 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 PIN1P1O15428 100 aa1.8□□□□□ -2.12
VPS13D-207ENST00000476169 MPC2O95563 127 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms