RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LINC01600Q96MT4 127 aa7.38□□□□□ -1.23
SYNE1-221ENST00000472563 TOMM7Q9P0U1 55 aa7.38□□□□□ -1.23
SYNE1-221ENST00000472563 GAGE2DQ9UEU5 116 aa7.38□□□□□ -1.23
SYNE1-221ENST00000472563 PSORS1C2Q9UIG4 136 aa7.38□□□□□ -1.23
SYNE1-221ENST00000472563 UBR4Q5T4S7 5183 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 FAM168BA1KXE4 195 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 APOC3P02656 99 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 NDUFA5Q16718 116 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 SVBPQ8N300 66 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 CST9LQ9H4G1 147 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 SMCO4Q9NRQ5 59 aa7.37□□□□□ -1.23
SYNE1-221ENST00000472563 IGLV5-45A0A087WSX0 123 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 TINCRA0A1B0GVN0 87 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 SNAPINO95295 136 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 REG3GQ6UW15 175 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 KRTAP7-1Q8IUC3 87 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 LINC00469Q8N7U9 141 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 TRAPPC1Q9Y5R8 145 aa7.36□□□□□ -1.23
SYNE1-221ENST00000472563 F8VRH5 84 aa7.35□□□□□ -1.23
SYNE1-221ENST00000472563 PMVKQ15126 192 aa7.35□□□□□ -1.23
SYNE1-221ENST00000472563 PDZD11Q5EBL8 140 aa7.35□□□□□ -1.23
SYNE1-221ENST00000472563 FAM19A5Q7Z5A7 132 aaPredicted RBP7.35□□□□□ -1.23
SYNE1-221ENST00000472563 TNXBP22105 4242 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 SMIM1B2RUZ4 78 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 CXCL5P42830 114 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 C1orf137Q5JT78 98 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 C9orf129Q5T035 196 aaKnown RBP7.34□□□□□ -1.23
SYNE1-221ENST00000472563 C18orf32Q8TCD1 76 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 PLA2G2DQ9UNK4 145 aa7.34□□□□□ -1.23
SYNE1-221ENST00000472563 A0A096LNJ9 63 aa7.33□□□□□ -1.24
SYNE1-221ENST00000472563 LINC00614P0C842 121 aa7.33□□□□□ -1.24
SYNE1-221ENST00000472563 KRTAP11-1Q8IUC1 163 aa7.33□□□□□ -1.24
SYNE1-221ENST00000472563 URB1-AS1Q96HZ7 61 aa7.33□□□□□ -1.24
SYNE1-221ENST00000472563 M0QXV9 152 aa7.32□□□□□ -1.24
SYNE1-221ENST00000472563 KRTAP10-8P60410 259 aa7.32□□□□□ -1.24
SYNE1-221ENST00000472563 ODF1Q14990 250 aa7.32□□□□□ -1.24
SYNE1-221ENST00000472563 COX7B2Q8TF08 81 aa7.32□□□□□ -1.24
SYNE1-221ENST00000472563 H3BRM9 83 aa7.31□□□□□ -1.24
SYNE1-221ENST00000472563 HBDP02042 147 aa7.31□□□□□ -1.24
SYNE1-221ENST00000472563 IGLV7-43P04211 117 aa7.31□□□□□ -1.24
SYNE1-221ENST00000472563 RAB5BP61020 215 aa7.31□□□□□ -1.24
SYNE1-221ENST00000472563 YPEL4Q96NS1 127 aa7.31□□□□□ -1.24
SYNE1-221ENST00000472563 SPINK8P0C7L1 97 aa7.3□□□□□ -1.24
SYNE1-221ENST00000472563 IGLC3P0DOY3 106 aa7.3□□□□□ -1.24
SYNE1-221ENST00000472563 UBE2BP63146 152 aa7.3□□□□□ -1.24
SYNE1-221ENST00000472563 DIRC1Q969H9 104 aa7.3□□□□□ -1.24
SYNE1-221ENST00000472563 XAGE1AQ9HD64 81 aa7.3□□□□□ -1.24
SYNE1-221ENST00000472563 NDUFA6P56556 154 aa7.29□□□□□ -1.24
SYNE1-221ENST00000472563 IGLV5-39A0A0G2JS06 123 aa7.28□□□□□ -1.24
SYNE1-221ENST00000472563 ATP5LO75964 103 aa7.28□□□□□ -1.24
SYNE1-221ENST00000472563 LBHQ53QV2 105 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-221ENST00000472563 C22orf24Q9Y442 160 aa7.28□□□□□ -1.24
SYNE1-221ENST00000472563 PMCHL1Q16048 86 aa7.27□□□□□ -1.25
SYNE1-221ENST00000472563 TP73-AS1Q9UF72 201 aa7.27□□□□□ -1.25
SYNE1-221ENST00000472563 H0Y9J4 135 aa7.26□□□□□ -1.25
SYNE1-221ENST00000472563 ZNF22P17026 224 aaPredicted RBP7.26□□□□□ -1.25
SYNE1-221ENST00000472563 BAGE3Q86Y29 109 aa7.26□□□□□ -1.25
SYNE1-221ENST00000472563 CHCHD1Q96BP2 118 aaKnown RBP7.26□□□□□ -1.25
SYNE1-221ENST00000472563 C11orf86A6NJI1 115 aa7.24□□□□□ -1.25
SYNE1-221ENST00000472563 NUPR1O60356 82 aa7.24□□□□□ -1.25
SYNE1-221ENST00000472563 MRPL55Q7Z7F7 128 aaKnown RBP7.24□□□□□ -1.25
SYNE1-221ENST00000472563 CBLN2Q8IUK8 224 aa7.24□□□□□ -1.25
SYNE1-221ENST00000472563 IGLV5-37A0A075B6J1 123 aa7.23□□□□□ -1.25
SYNE1-221ENST00000472563 ZNF861PO60384 105 aa7.22□□□□□ -1.25
SYNE1-221ENST00000472563 TMEM170BQ5T4T1 132 aa7.22□□□□□ -1.25
SYNE1-221ENST00000472563 SFTA2Q6UW10 78 aa7.22□□□□□ -1.25
SYNE1-221ENST00000472563 CHTOPQ9Y3Y2 248 aaKnown RBP7.22□□□□□ -1.25
SYNE1-221ENST00000472563 LRP2P98164 4655 aa7.22□□□□□ -1.25
SYNE1-221ENST00000472563 TRAV12-1A0A0B4J245 112 aa7.21□□□□□ -1.26
SYNE1-221ENST00000472563 KRTAP1-4P0C5Y4 121 aa7.21□□□□□ -1.26
SYNE1-221ENST00000472563 PRR26Q8N8Z3 221 aa7.21□□□□□ -1.26
SYNE1-221ENST00000472563 IFI27L1Q96BM0 104 aa7.21□□□□□ -1.26
SYNE1-221ENST00000472563 LINC00167Q96N53 147 aa7.21□□□□□ -1.26
SYNE1-221ENST00000472563 IGLV1-50A0A075B6I6 118 aa7.2□□□□□ -1.26
SYNE1-221ENST00000472563 PFN2P35080 140 aa7.2□□□□□ -1.26
SYNE1-221ENST00000472563 COX17Q14061 63 aa7.2□□□□□ -1.26
SYNE1-221ENST00000472563 ERG28Q9UKR5 140 aa7.2□□□□□ -1.26
SYNE1-221ENST00000472563 BCE1O60756 84 aa7.19□□□□□ -1.26
SYNE1-221ENST00000472563 HSBP1O75506 76 aa7.19□□□□□ -1.26
SYNE1-221ENST00000472563 TRGC2P03986 189 aa7.19□□□□□ -1.26
SYNE1-221ENST00000472563 NKAPP1Q8N9T2 125 aa7.19□□□□□ -1.26
SYNE1-221ENST00000472563 ZNF625Q96I27 306 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-221ENST00000472563 TMEM223A0PJW6 202 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 GAGE10A6NGK3 116 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 RPL37AP8A6NKH3 93 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 RPL28P46779 137 aaKnown RBP7.18□□□□□ -1.26
SYNE1-221ENST00000472563 SLC7A5P1Q8MH63 180 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 SND1-IT1Q9HBX3 110 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 RNF213Q63HN8 5207 aa7.18□□□□□ -1.26
SYNE1-221ENST00000472563 FAM19A2Q8N3H0 131 aa7.17□□□□□ -1.26
SYNE1-221ENST00000472563 VPREB1P12018 145 aa7.16□□□□□ -1.26
SYNE1-221ENST00000472563 RPL13AP40429 203 aaKnown RBP7.16□□□□□ -1.26
SYNE1-221ENST00000472563 RPL24P83731 157 aaKnown RBP7.15□□□□□ -1.26
SYNE1-221ENST00000472563 COLCA2A8K830 154 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 SCO1O75880 301 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 SERF1AO75920 110 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 LINC00158P58513 81 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 LINC00310P59036 64 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 KRTAP13-1Q8IUC0 172 aa7.14□□□□□ -1.27
SYNE1-221ENST00000472563 IGKV2-28A0A075B6P5 120 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms