RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ANK3Q12955 4377 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 A0A0J9YWU9 116 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 CYSRT1A8MQ03 144 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 MRPL23Q16540 153 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 GAGE2EQ4V326 116 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 SOSTDC1Q6X4U4 206 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 GAGE2DQ9UEU5 116 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 A8MTW9 85 aa9.58□□□□□ -0.88
CCDC88A-211ENST00000471947 COX7A2LO14548 114 aa9.57□□□□□ -0.88
CCDC88A-211ENST00000471947 TIRAPP58753 221 aa9.57□□□□□ -0.88
CCDC88A-211ENST00000471947 SIGMAR1Q99720 223 aa9.57□□□□□ -0.88
CCDC88A-211ENST00000471947 SMCPP49901 116 aaPredicted RBP9.56□□□□□ -0.88
CCDC88A-211ENST00000471947 S100A7L2Q5SY68 101 aa9.56□□□□□ -0.88
CCDC88A-211ENST00000471947 NDUFA1O15239 70 aa9.56□□□□□ -0.88
CCDC88A-211ENST00000471947 FOXI1Q12951 378 aa9.55□□□□□ -0.88
CCDC88A-211ENST00000471947 OVOL2Q9BRP0 275 aa9.55□□□□□ -0.88
CCDC88A-211ENST00000471947 KPRPQ5T749 579 aaPredicted RBP9.55□□□□□ -0.88
CCDC88A-211ENST00000471947 WFDC10BQ8IUB3 73 aa9.55□□□□□ -0.88
CCDC88A-211ENST00000471947 TRBV20-1A0A075B6N2 111 aa9.54□□□□□ -0.88
CCDC88A-211ENST00000471947 TENM2Q9NT68 2774 aa9.54□□□□□ -0.88
CCDC88A-211ENST00000471947 SPAG11BQ08648 103 aa9.54□□□□□ -0.88
CCDC88A-211ENST00000471947 TTC32Q5I0X7 151 aa9.54□□□□□ -0.88
CCDC88A-211ENST00000471947 UNQ6190/PRO20217Q6UXQ8 127 aa9.54□□□□□ -0.88
CCDC88A-211ENST00000471947 KRTAP10-11P60412 298 aa9.53□□□□□ -0.88
CCDC88A-211ENST00000471947 CITED1Q99966 193 aa9.53□□□□□ -0.88
CCDC88A-211ENST00000471947 ZNF561-AS1K7EIQ3 104 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 LITAFQ99732 161 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 DEFB131BA0A096LNP1 70 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 CCL18P55774 89 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 LYRM9A8MSI8 78 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 TEN1Q86WV5 123 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 PPDPFLQ8WWR9 84 aa9.52□□□□□ -0.89
CCDC88A-211ENST00000471947 GAGE2AQ6NT46 116 aa9.51□□□□□ -0.89
CCDC88A-211ENST00000471947 C11orf45Q8TAV5 145 aa9.51□□□□□ -0.89
CCDC88A-211ENST00000471947 TRAV8-4A0A0B4J246 113 aa9.51□□□□□ -0.89
CCDC88A-211ENST00000471947 RPL18AQ02543 176 aaKnown RBP9.51□□□□□ -0.89
CCDC88A-211ENST00000471947 A0A0B4J2C4 111 aa9.5□□□□□ -0.89
CCDC88A-211ENST00000471947 MT-ATP8P03928 68 aa9.5□□□□□ -0.89
CCDC88A-211ENST00000471947 KIR2DL5BQ8NHK3 375 aa9.5□□□□□ -0.89
CCDC88A-211ENST00000471947 IGHV3OR16-9A0A0B4J2B5 98 aa9.5□□□□□ -0.89
CCDC88A-211ENST00000471947 BAALC-AS2P0C853 105 aa9.5□□□□□ -0.89
CCDC88A-211ENST00000471947 MIFP14174 115 aa9.49□□□□□ -0.89
CCDC88A-211ENST00000471947 IL17DQ8TAD2 202 aa9.49□□□□□ -0.89
CCDC88A-211ENST00000471947 SMIM9A6NGZ8 99 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 C10orf25Q5T742 122 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 Q8NAQ8 132 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 SBSPONQ8IVN8 264 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 LINC00337Q8N6G1 96 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 C15orf53Q8NAA6 179 aa9.48□□□□□ -0.89
CCDC88A-211ENST00000471947 CAMK2N2Q96S95 79 aa9.47□□□□□ -0.89
CCDC88A-211ENST00000471947 IFITM1P13164 125 aa9.47□□□□□ -0.89
CCDC88A-211ENST00000471947 RNF183Q96D59 192 aa9.47□□□□□ -0.89
CCDC88A-211ENST00000471947 SNCGO76070 127 aa9.47□□□□□ -0.89
CCDC88A-211ENST00000471947 HERV-K104P63124 156 aa9.47□□□□□ -0.89
CCDC88A-211ENST00000471947 COPS9Q8WXC6 57 aa9.46□□□□□ -0.89
CCDC88A-211ENST00000471947 DPH3Q96FX2 82 aa9.46□□□□□ -0.89
CCDC88A-211ENST00000471947 PRO0461Q9UI25 63 aa9.46□□□□□ -0.89
CCDC88A-211ENST00000471947 SMIM11BQ8TCY0 68 aa9.46□□□□□ -0.9
CCDC88A-211ENST00000471947 SPANXDQ9BXN6 97 aa9.46□□□□□ -0.9
CCDC88A-211ENST00000471947 SPANXCQ9NY87 97 aa9.46□□□□□ -0.9
CCDC88A-211ENST00000471947 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
CCDC88A-211ENST00000471947 H7C423 109 aa9.45□□□□□ -0.9
CCDC88A-211ENST00000471947 A0A087WZ39 114 aa9.45□□□□□ -0.9
CCDC88A-211ENST00000471947 C1orf43Q9BWL3 253 aa9.45□□□□□ -0.9
CCDC88A-211ENST00000471947 FAM218AQ96MZ4 157 aa9.43□□□□□ -0.9
CCDC88A-211ENST00000471947 TRAV13-2A0A0B4J235 113 aa9.43□□□□□ -0.9
CCDC88A-211ENST00000471947 TRBV10-2A0A0K0K1G8 114 aa9.43□□□□□ -0.9
CCDC88A-211ENST00000471947 C14orf132Q9NPU4 83 aa9.43□□□□□ -0.9
CCDC88A-211ENST00000471947 CSDC2Q9Y534 153 aaKnown RBP9.43□□□□□ -0.9
CCDC88A-211ENST00000471947 A0A087WYN8 130 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 XGP55808 180 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 LYPD5Q6UWN5 251 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 CD164L2Q6UWJ8 174 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 TRBV30A0A0K0K1B3 111 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 UBE2DNLQ8IWF7 75 aa9.42□□□□□ -0.9
CCDC88A-211ENST00000471947 LAMTOR3Q9UHA4 124 aa9.41□□□□□ -0.9
CCDC88A-211ENST00000471947 C6orf99Q4VX62 202 aa9.41□□□□□ -0.9
CCDC88A-211ENST00000471947 SHISA2Q6UWI4 295 aa9.41□□□□□ -0.9
CCDC88A-211ENST00000471947 DEFB105AQ8NG35 78 aa9.41□□□□□ -0.9
CCDC88A-211ENST00000471947 ESRGQ1W209 222 aa9.4□□□□□ -0.9
CCDC88A-211ENST00000471947 IGLV5-45A0A087WSX0 123 aa9.4□□□□□ -0.9
CCDC88A-211ENST00000471947 LELP1Q5T871 98 aa9.4□□□□□ -0.91
CCDC88A-211ENST00000471947 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 LST1O00453 97 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 GAGE2BQ13066 116 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 PSCAO43653 123 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 IGKV2-28A0A075B6P5 120 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 IGKV2-24A0A0C4DH68 120 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 IBA57-AS1B1ANH7 110 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 IGKV2D-28P01615 120 aa9.38□□□□□ -0.91
CCDC88A-211ENST00000471947 WFDC9Q8NEX5 89 aa9.37□□□□□ -0.91
CCDC88A-211ENST00000471947 IGKV3D-7A0A0C4DH55 119 aa9.36□□□□□ -0.91
CCDC88A-211ENST00000471947 M0R2N4 97 aa9.35□□□□□ -0.91
CCDC88A-211ENST00000471947 ENHOQ6UWT2 76 aa9.35□□□□□ -0.91
CCDC88A-211ENST00000471947 TIMM17BO60830 172 aa9.34□□□□□ -0.91
CCDC88A-211ENST00000471947 ANAPC13Q9BS18 74 aa9.34□□□□□ -0.91
CCDC88A-211ENST00000471947 HIST1H4AP62805 103 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-211ENST00000471947 A0A1B0GUV1 79 aa9.33□□□□□ -0.92
CCDC88A-211ENST00000471947 RPL37AP8A6NKH3 93 aa9.33□□□□□ -0.92
CCDC88A-211ENST00000471947 Q8IZM0 81 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms