RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 C6orf226Q5I0X4 101 aa12.74□□□□□ -0.37
SHANK1-206ENST00000468654 ALKBH7Q9BT30 221 aaPredicted RBP12.74□□□□□ -0.37
SHANK1-206ENST00000468654 CDKN2A-AS1Q9UH64 79 aa12.74□□□□□ -0.37
SHANK1-206ENST00000468654 KIAA1644Q3SXP7 199 aa12.73□□□□□ -0.37
SHANK1-206ENST00000468654 TRAV9-1A0A075B6T8 112 aa12.72□□□□□ -0.37
SHANK1-206ENST00000468654 GEMIN7Q9H840 131 aaKnown RBP12.72□□□□□ -0.37
SHANK1-206ENST00000468654 KRTAP1-4P0C5Y4 121 aa12.71□□□□□ -0.37
SHANK1-206ENST00000468654 UQCC3Q6UW78 93 aa12.71□□□□□ -0.37
SHANK1-206ENST00000468654 LINC00469Q8N7U9 141 aa12.71□□□□□ -0.37
SHANK1-206ENST00000468654 TMEM218A2RU14 115 aa12.7□□□□□ -0.38
SHANK1-206ENST00000468654 F8VRH5 84 aa12.7□□□□□ -0.38
SHANK1-206ENST00000468654 ERASQ7Z444 233 aa12.7□□□□□ -0.38
SHANK1-206ENST00000468654 IGLV1-50A0A075B6I6 118 aa12.69□□□□□ -0.38
SHANK1-206ENST00000468654 SCGB3A1Q96QR1 104 aa12.69□□□□□ -0.38
SHANK1-206ENST00000468654 CXCL5P42830 114 aa12.68□□□□□ -0.38
SHANK1-206ENST00000468654 XAGE1AQ9HD64 81 aa12.68□□□□□ -0.38
SHANK1-206ENST00000468654 SMIM1B2RUZ4 78 aa12.67□□□□□ -0.38
SHANK1-206ENST00000468654 C22orf24Q9Y442 160 aa12.67□□□□□ -0.38
SHANK1-206ENST00000468654 LINC01546A6NGU7 62 aa12.66□□□□□ -0.38
SHANK1-206ENST00000468654 GNB1LQ9BYB4 327 aa12.66□□□□□ -0.38
SHANK1-206ENST00000468654 IGLV5-45A0A087WSX0 123 aa12.65□□□□□ -0.38
SHANK1-206ENST00000468654 TINCRA0A1B0GVN0 87 aa12.65□□□□□ -0.38
SHANK1-206ENST00000468654 LINC01549A6NIU2 74 aa12.65□□□□□ -0.38
SHANK1-206ENST00000468654 NUPR1O60356 82 aa12.64□□□□□ -0.39
SHANK1-206ENST00000468654 LBHQ53QV2 105 aaPredicted RBP12.64□□□□□ -0.39
SHANK1-206ENST00000468654 SEC11CQ9BY50 192 aa12.64□□□□□ -0.39
SHANK1-206ENST00000468654 TP73-AS1Q9UF72 201 aa12.64□□□□□ -0.39
SHANK1-206ENST00000468654 ZNF861PO60384 105 aa12.63□□□□□ -0.39
SHANK1-206ENST00000468654 S100PP25815 95 aa12.63□□□□□ -0.39
SHANK1-206ENST00000468654 IFITM2Q01629 132 aa12.63□□□□□ -0.39
SHANK1-206ENST00000468654 PDZD11Q5EBL8 140 aa12.63□□□□□ -0.39
SHANK1-206ENST00000468654 COX7B2Q8TF08 81 aa12.62□□□□□ -0.39
SHANK1-206ENST00000468654 CST9LQ9H4G1 147 aa12.62□□□□□ -0.39
SHANK1-206ENST00000468654 RPL13AP40429 203 aaKnown RBP12.61□□□□□ -0.39
SHANK1-206ENST00000468654 MRPL55Q7Z7F7 128 aaKnown RBP12.61□□□□□ -0.39
SHANK1-206ENST00000468654 COX19Q49B96 90 aa12.6□□□□□ -0.39
SHANK1-206ENST00000468654 CARHSP1Q9Y2V2 147 aaKnown RBP12.59□□□□□ -0.39
SHANK1-206ENST00000468654 SPINK8P0C7L1 97 aa12.58□□□□□ -0.4
SHANK1-206ENST00000468654 PMVKQ15126 192 aa12.58□□□□□ -0.4
SHANK1-206ENST00000468654 FA2HQ7L5A8 372 aa12.58□□□□□ -0.4
SHANK1-206ENST00000468654 MRPL18Q9H0U6 180 aaKnown RBP12.57□□□□□ -0.4
SHANK1-206ENST00000468654 SMCO4Q9NRQ5 59 aa12.56□□□□□ -0.4
SHANK1-206ENST00000468654 BCE1O60756 84 aa12.55□□□□□ -0.4
SHANK1-206ENST00000468654 FABP9Q0Z7S8 132 aa12.55□□□□□ -0.4
SHANK1-206ENST00000468654 COMMD7Q86VX2 200 aa12.55□□□□□ -0.4
SHANK1-206ENST00000468654 IGLV5-37A0A075B6J1 123 aa12.53□□□□□ -0.4
SHANK1-206ENST00000468654 H3BRM9 83 aa12.53□□□□□ -0.4
SHANK1-206ENST00000468654 RPL28P46779 137 aaKnown RBP12.53□□□□□ -0.4
SHANK1-206ENST00000468654 RHEBQ15382 184 aa12.53□□□□□ -0.4
SHANK1-206ENST00000468654 C10orf91Q5T1B1 145 aa12.53□□□□□ -0.4
SHANK1-206ENST00000468654 LINC00167Q96N53 147 aa12.53□□□□□ -0.4
SHANK1-206ENST00000468654 IGLC3P0DOY3 106 aa12.52□□□□□ -0.41
SHANK1-206ENST00000468654 A0A096LNJ9 63 aa12.51□□□□□ -0.41
SHANK1-206ENST00000468654 RAB5BP61020 215 aa12.51□□□□□ -0.41
SHANK1-206ENST00000468654 IGLV5-39A0A0G2JS06 123 aa12.5□□□□□ -0.41
SHANK1-206ENST00000468654 RPL37AP8A6NKH3 93 aa12.5□□□□□ -0.41
SHANK1-206ENST00000468654 RPS10P5Q9NQ39 176 aa12.5□□□□□ -0.41
SHANK1-206ENST00000468654 GAGE10A6NGK3 116 aa12.49□□□□□ -0.41
SHANK1-206ENST00000468654 ATP5LO75964 103 aa12.49□□□□□ -0.41
SHANK1-206ENST00000468654 ZNF22P17026 224 aaPredicted RBP12.48□□□□□ -0.41
SHANK1-206ENST00000468654 NKAPP1Q8N9T2 125 aa12.48□□□□□ -0.41
SHANK1-206ENST00000468654 URB1-AS1Q96HZ7 61 aa12.48□□□□□ -0.41
SHANK1-206ENST00000468654 A0A087X002 238 aa12.47□□□□□ -0.41
SHANK1-206ENST00000468654 C18orf32Q8TCD1 76 aa12.47□□□□□ -0.41
SHANK1-206ENST00000468654 MUC2Q02817 5179 aa12.47□□□□□ -0.41
SHANK1-206ENST00000468654 KRTAP13-1Q8IUC0 172 aa12.46□□□□□ -0.41
SHANK1-206ENST00000468654 HBDP02042 147 aa12.45□□□□□ -0.42
SHANK1-206ENST00000468654 NDUFA6P56556 154 aa12.45□□□□□ -0.42
SHANK1-206ENST00000468654 PRR4Q16378 134 aa12.45□□□□□ -0.42
SHANK1-206ENST00000468654 LINC00614P0C842 121 aa12.44□□□□□ -0.42
SHANK1-206ENST00000468654 TRAPPC1Q9Y5R8 145 aa12.44□□□□□ -0.42
SHANK1-206ENST00000468654 PFN2P35080 140 aa12.43□□□□□ -0.42
SHANK1-206ENST00000468654 SCO1O75880 301 aa12.42□□□□□ -0.42
SHANK1-206ENST00000468654 CRYGAP11844 174 aa12.42□□□□□ -0.42
SHANK1-206ENST00000468654 UBE2AP49459 152 aa12.42□□□□□ -0.42
SHANK1-206ENST00000468654 PMCHL1Q16048 86 aa12.42□□□□□ -0.42
SHANK1-206ENST00000468654 ERG28Q9UKR5 140 aa12.42□□□□□ -0.42
SHANK1-206ENST00000468654 VPREB1P12018 145 aa12.41□□□□□ -0.42
SHANK1-206ENST00000468654 IGKV2-28A0A075B6P5 120 aa12.4□□□□□ -0.42
SHANK1-206ENST00000468654 IGKV2D-28P01615 120 aa12.4□□□□□ -0.42
SHANK1-206ENST00000468654 TYMSOSQ8TAI1 123 aa12.4□□□□□ -0.42
SHANK1-206ENST00000468654 SND1-IT1Q9HBX3 110 aa12.4□□□□□ -0.42
SHANK1-206ENST00000468654 C11orf86A6NJI1 115 aa12.39□□□□□ -0.43
SHANK1-206ENST00000468654 COX17Q14061 63 aa12.39□□□□□ -0.43
SHANK1-206ENST00000468654 TSPAN13O95857 204 aa12.38□□□□□ -0.43
SHANK1-206ENST00000468654 ANAPC11Q9NYG5 84 aa12.38□□□□□ -0.43
SHANK1-206ENST00000468654 SFTA2Q6UW10 78 aa12.37□□□□□ -0.43
SHANK1-206ENST00000468654 BAGE3Q86Y29 109 aa12.37□□□□□ -0.43
SHANK1-206ENST00000468654 KRTAP13-2Q52LG2 175 aa12.36□□□□□ -0.43
SHANK1-206ENST00000468654 TMEM170BQ5T4T1 132 aa12.36□□□□□ -0.43
SHANK1-206ENST00000468654 ZNF625Q96I27 306 aaPredicted RBP12.36□□□□□ -0.43
SHANK1-206ENST00000468654 FAM229BQ4G0N7 80 aa12.35□□□□□ -0.43
SHANK1-206ENST00000468654 Q8NDZ9 215 aa12.35□□□□□ -0.43
SHANK1-206ENST00000468654 APOC3P02656 99 aa12.34□□□□□ -0.43
SHANK1-206ENST00000468654 PRLHP81277 87 aa12.34□□□□□ -0.43
SHANK1-206ENST00000468654 RPL24P83731 157 aaKnown RBP12.34□□□□□ -0.43
SHANK1-206ENST00000468654 TMEM126AQ9H061 195 aa12.34□□□□□ -0.43
SHANK1-206ENST00000468654 TMEM238C9JI98 176 aa12.33□□□□□ -0.44
SHANK1-206ENST00000468654 SNAPINO95295 136 aa12.32□□□□□ -0.44
SHANK1-206ENST00000468654 M0R378 163 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms