RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 ALKBH7Q9BT30 221 aaPredicted RBP4.46□□□□□ -1.7
PTPRF-210ENST00000463041 GEMIN7Q9H840 131 aaKnown RBP4.46□□□□□ -1.7
PTPRF-210ENST00000463041 TOMM7Q9P0U1 55 aa4.46□□□□□ -1.7
PTPRF-210ENST00000463041 LRP2P98164 4655 aa4.46□□□□□ -1.7
PTPRF-210ENST00000463041 LINC01546A6NGU7 62 aa4.45□□□□□ -1.7
PTPRF-210ENST00000463041 ODF1Q14990 250 aa4.45□□□□□ -1.7
PTPRF-210ENST00000463041 CDKN2A-AS1Q9UH64 79 aa4.45□□□□□ -1.7
PTPRF-210ENST00000463041 TINCRA0A1B0GVN0 87 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 F8VRH5 84 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 UBE2BP63146 152 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 FABP9Q0Z7S8 132 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 C9orf129Q5T035 196 aaKnown RBP4.44□□□□□ -1.7
PTPRF-210ENST00000463041 C10orf91Q5T1B1 145 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 FAM19A5Q7Z5A7 132 aaPredicted RBP4.44□□□□□ -1.7
PTPRF-210ENST00000463041 KRTAP7-1Q8IUC3 87 aa4.44□□□□□ -1.7
PTPRF-210ENST00000463041 M0QXV9 152 aa4.43□□□□□ -1.7
PTPRF-210ENST00000463041 CXCL5P42830 114 aa4.43□□□□□ -1.7
PTPRF-210ENST00000463041 LBHQ53QV2 105 aaPredicted RBP4.43□□□□□ -1.7
PTPRF-210ENST00000463041 PDZD11Q5EBL8 140 aa4.43□□□□□ -1.7
PTPRF-210ENST00000463041 KRTAP11-1Q8IUC1 163 aa4.43□□□□□ -1.7
PTPRF-210ENST00000463041 CST9LQ9H4G1 147 aa4.43□□□□□ -1.7
PTPRF-210ENST00000463041 IGLV5-45A0A087WSX0 123 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 H0Y9J4 135 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 PMVKQ15126 192 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 RHEBQ15382 184 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 FA2HQ7L5A8 372 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 COMMD7Q86VX2 200 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 LINC00469Q8N7U9 141 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 MRPL18Q9H0U6 180 aaKnown RBP4.42□□□□□ -1.7
PTPRF-210ENST00000463041 RPS10P5Q9NQ39 176 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 SMCO4Q9NRQ5 59 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 CARHSP1Q9Y2V2 147 aaKnown RBP4.42□□□□□ -1.7
PTPRF-210ENST00000463041 C22orf24Q9Y442 160 aa4.42□□□□□ -1.7
PTPRF-210ENST00000463041 SMIM1B2RUZ4 78 aa4.41□□□□□ -1.7
PTPRF-210ENST00000463041 NUPR1O60356 82 aa4.41□□□□□ -1.7
PTPRF-210ENST00000463041 COX7B2Q8TF08 81 aa4.41□□□□□ -1.7
PTPRF-210ENST00000463041 TP73-AS1Q9UF72 201 aa4.41□□□□□ -1.7
PTPRF-210ENST00000463041 IGLV1-50A0A075B6I6 118 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 H3BRM9 83 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 ZNF861PO60384 105 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 LINC00614P0C842 121 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 XAGE1AQ9HD64 81 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 TRAPPC1Q9Y5R8 145 aa4.4□□□□□ -1.71
PTPRF-210ENST00000463041 RAB5BP61020 215 aa4.39□□□□□ -1.71
PTPRF-210ENST00000463041 MRPL55Q7Z7F7 128 aaKnown RBP4.39□□□□□ -1.71
PTPRF-210ENST00000463041 PRR26Q8N8Z3 221 aa4.39□□□□□ -1.71
PTPRF-210ENST00000463041 RNF213Q63HN8 5207 aa4.39□□□□□ -1.71
PTPRF-210ENST00000463041 KRTAP1-4P0C5Y4 121 aa4.38□□□□□ -1.71
PTPRF-210ENST00000463041 SPINK8P0C7L1 97 aa4.38□□□□□ -1.71
PTPRF-210ENST00000463041 IGLC3P0DOY3 106 aa4.38□□□□□ -1.71
PTPRF-210ENST00000463041 RPL13AP40429 203 aaKnown RBP4.38□□□□□ -1.71
PTPRF-210ENST00000463041 NDUFA6P56556 154 aa4.38□□□□□ -1.71
PTPRF-210ENST00000463041 C18orf32Q8TCD1 76 aa4.38□□□□□ -1.71
PTPRF-210ENST00000463041 IGLV5-37A0A075B6J1 123 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 IGLV5-39A0A0G2JS06 123 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 ATP5LO75964 103 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 SNAPINO95295 136 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 HBDP02042 147 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 APOC3P02656 99 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 RPL28P46779 137 aaKnown RBP4.37□□□□□ -1.71
PTPRF-210ENST00000463041 NDUFA5Q16718 116 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 URB1-AS1Q96HZ7 61 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 LINC00167Q96N53 147 aa4.37□□□□□ -1.71
PTPRF-210ENST00000463041 A0A096LNJ9 63 aa4.36□□□□□ -1.71
PTPRF-210ENST00000463041 BCE1O60756 84 aa4.36□□□□□ -1.71
PTPRF-210ENST00000463041 COX17Q14061 63 aa4.36□□□□□ -1.71
PTPRF-210ENST00000463041 SVBPQ8N300 66 aa4.36□□□□□ -1.71
PTPRF-210ENST00000463041 RPL37AP8A6NKH3 93 aa4.35□□□□□ -1.71
PTPRF-210ENST00000463041 ZNF22P17026 224 aaPredicted RBP4.35□□□□□ -1.71
PTPRF-210ENST00000463041 SFTA2Q6UW10 78 aa4.35□□□□□ -1.71
PTPRF-210ENST00000463041 BAGE3Q86Y29 109 aa4.35□□□□□ -1.71
PTPRF-210ENST00000463041 NKAPP1Q8N9T2 125 aa4.35□□□□□ -1.71
PTPRF-210ENST00000463041 LPAP08519 4548 aa4.34□□□□□ -1.71
PTPRF-210ENST00000463041 PFN2P35080 140 aa4.34□□□□□ -1.71
PTPRF-210ENST00000463041 RPL24P83731 157 aaKnown RBP4.34□□□□□ -1.71
PTPRF-210ENST00000463041 PMCHL1Q16048 86 aa4.34□□□□□ -1.71
PTPRF-210ENST00000463041 TMEM170BQ5T4T1 132 aa4.34□□□□□ -1.71
PTPRF-210ENST00000463041 CHCHD1Q96BP2 118 aaKnown RBP4.34□□□□□ -1.71
PTPRF-210ENST00000463041 ERG28Q9UKR5 140 aa4.34□□□□□ -1.71
PTPRF-210ENST00000463041 GAGE10A6NGK3 116 aa4.33□□□□□ -1.72
PTPRF-210ENST00000463041 C11orf86A6NJI1 115 aa4.33□□□□□ -1.72
PTPRF-210ENST00000463041 SND1-IT1Q9HBX3 110 aa4.33□□□□□ -1.72
PTPRF-210ENST00000463041 CHTOPQ9Y3Y2 248 aaKnown RBP4.33□□□□□ -1.72
PTPRF-210ENST00000463041 TRAV12-1A0A0B4J245 112 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 CRYGAP11844 174 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 VPREB1P12018 145 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 UBE2AP49459 152 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 IFI27L1Q96BM0 104 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 YPEL4Q96NS1 127 aa4.32□□□□□ -1.72
PTPRF-210ENST00000463041 TMEM223A0PJW6 202 aa4.31□□□□□ -1.72
PTPRF-210ENST00000463041 KRTAP13-1Q8IUC0 172 aa4.31□□□□□ -1.72
PTPRF-210ENST00000463041 TYMSOSQ8TAI1 123 aa4.31□□□□□ -1.72
PTPRF-210ENST00000463041 ZNF625Q96I27 306 aaPredicted RBP4.31□□□□□ -1.72
PTPRF-210ENST00000463041 IGKV2-28A0A075B6P5 120 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 SCO1O75880 301 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 IGKV2D-28P01615 120 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 LINC00158P58513 81 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 PRR4Q16378 134 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 FAM229BQ4G0N7 80 aa4.3□□□□□ -1.72
PTPRF-210ENST00000463041 A0A087X002 238 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms