RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PLXNB1O43157 2135 aa10.98□□□□□ -0.65
PTPRF-206ENST00000429895 SBSPONQ8IVN8 264 aa10.98□□□□□ -0.65
PTPRF-206ENST00000429895 ZNF580Q9UK33 172 aa10.98□□□□□ -0.65
PTPRF-206ENST00000429895 TSPEAR-AS2P59090 65 aa10.97□□□□□ -0.65
PTPRF-206ENST00000429895 A0A087WSZ3 146 aa10.97□□□□□ -0.65
PTPRF-206ENST00000429895 C16orf95Q9H693 158 aa10.97□□□□□ -0.65
PTPRF-206ENST00000429895 LYPD5Q6UWN5 251 aa10.97□□□□□ -0.65
PTPRF-206ENST00000429895 TTC28Q96AY4 2481 aa10.96□□□□□ -0.65
PTPRF-206ENST00000429895 C2orf48Q96LS8 159 aa10.96□□□□□ -0.65
PTPRF-206ENST00000429895 LINC00575Q6W349 94 aa10.96□□□□□ -0.66
PTPRF-206ENST00000429895 PRLHP81277 87 aa10.96□□□□□ -0.66
PTPRF-206ENST00000429895 CNFNQ9BYD5 112 aa10.96□□□□□ -0.66
PTPRF-206ENST00000429895 ARHGAP32A7KAX9 2087 aa10.95□□□□□ -0.66
PTPRF-206ENST00000429895 ADAMTSL4-AS1Q5T5F5 129 aa10.95□□□□□ -0.66
PTPRF-206ENST00000429895 A0A1W2PPR1 153 aa10.95□□□□□ -0.66
PTPRF-206ENST00000429895 A8MTW9 85 aa10.95□□□□□ -0.66
PTPRF-206ENST00000429895 RAI1Q7Z5J4 1906 aaPredicted RBP10.94□□□□□ -0.66
PTPRF-206ENST00000429895 HCFC1P51610 2035 aa10.93□□□□□ -0.66
PTPRF-206ENST00000429895 BEAN1Q3B7T3 259 aa10.93□□□□□ -0.66
PTPRF-206ENST00000429895 TRAV7A0A075B6U4 112 aa10.92□□□□□ -0.66
PTPRF-206ENST00000429895 Q6ZRU5 148 aa10.92□□□□□ -0.66
PTPRF-206ENST00000429895 EXPH5Q8NEV8 1989 aa10.92□□□□□ -0.66
PTPRF-206ENST00000429895 H0Y9P7 68 aa10.91□□□□□ -0.66
PTPRF-206ENST00000429895 URB1-AS1Q96HZ7 61 aa10.9□□□□□ -0.67
PTPRF-206ENST00000429895 HCG22E2RYF7 251 aa10.89□□□□□ -0.67
PTPRF-206ENST00000429895 Q8N3U1 123 aa10.88□□□□□ -0.67
PTPRF-206ENST00000429895 LINC00337Q8N6G1 96 aa10.88□□□□□ -0.67
PTPRF-206ENST00000429895 C1orf195Q5TG92 126 aa10.87□□□□□ -0.67
PTPRF-206ENST00000429895 AMELXQ99217 191 aa10.87□□□□□ -0.67
PTPRF-206ENST00000429895 TRBV7-7A0A0K0K1E9 115 aa10.87□□□□□ -0.67
PTPRF-206ENST00000429895 FHL3Q13643 280 aa10.87□□□□□ -0.67
PTPRF-206ENST00000429895 PSPHP1O15172 72 aa10.87□□□□□ -0.67
PTPRF-206ENST00000429895 CACNA1AO00555 2505 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 IGKV2D-30A0A075B6S6 120 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 IGKV2-30P06310 120 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 LIMD2Q9BT23 127 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 SMCR5Q8TEV8 140 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 SMIM26A0A096LP01 95 aa10.86□□□□□ -0.67
PTPRF-206ENST00000429895 C22orf24Q9Y442 160 aa10.85□□□□□ -0.67
PTPRF-206ENST00000429895 MDFIQ99750 246 aa10.85□□□□□ -0.67
PTPRF-206ENST00000429895 CRYGAP11844 174 aa10.85□□□□□ -0.67
PTPRF-206ENST00000429895 CSDC2Q9Y534 153 aaKnown RBP10.84□□□□□ -0.67
PTPRF-206ENST00000429895 PMAIP1Q13794 54 aa10.84□□□□□ -0.67
PTPRF-206ENST00000429895 A0A1B0GUV1 79 aa10.83□□□□□ -0.68
PTPRF-206ENST00000429895 SPACA4Q8TDM5 124 aa10.83□□□□□ -0.68
PTPRF-206ENST00000429895 ATG2AQ2TAZ0 1938 aa10.83□□□□□ -0.68
PTPRF-206ENST00000429895 LINC00310P59036 64 aa10.83□□□□□ -0.68
PTPRF-206ENST00000429895 NAV3Q8IVL0 2385 aa10.83□□□□□ -0.68
PTPRF-206ENST00000429895 F8WDY8 70 aa10.82□□□□□ -0.68
PTPRF-206ENST00000429895 NHLRC4P0CG21 123 aaPredicted RBP10.82□□□□□ -0.68
PTPRF-206ENST00000429895 NAV2Q8IVL1 2488 aa10.82□□□□□ -0.68
PTPRF-206ENST00000429895 ABCA2Q9BZC7 2435 aa10.81□□□□□ -0.68
PTPRF-206ENST00000429895 MUC22E2RYF6 1773 aaPredicted RBP10.81□□□□□ -0.68
PTPRF-206ENST00000429895 Q9UF83 564 aa10.8□□□□□ -0.68
PTPRF-206ENST00000429895 C7orf65Q6ZTY9 151 aa10.8□□□□□ -0.68
PTPRF-206ENST00000429895 CCDC168Q8NDH2 2452 aa10.79□□□□□ -0.68
PTPRF-206ENST00000429895 MOBPQ13875 183 aa10.77□□□□□ -0.69
PTPRF-206ENST00000429895 KIAA0087Q14695 138 aa10.77□□□□□ -0.69
PTPRF-206ENST00000429895 Q8N2B8 174 aa10.77□□□□□ -0.69
PTPRF-206ENST00000429895 EML5Q05BV3 1969 aa10.77□□□□□ -0.69
PTPRF-206ENST00000429895 LRP4O75096 1905 aa10.76□□□□□ -0.69
PTPRF-206ENST00000429895 C1orf64Q8NEQ6 169 aa10.75□□□□□ -0.69
PTPRF-206ENST00000429895 LINC00846Q9NV44 126 aa10.74□□□□□ -0.69
PTPRF-206ENST00000429895 A0A096LNJ9 63 aa10.73□□□□□ -0.69
PTPRF-206ENST00000429895 MYO18BQ8IUG5 2567 aa10.73□□□□□ -0.69
PTPRF-206ENST00000429895 DOPEY1Q5JWR5 2465 aa10.72□□□□□ -0.69
PTPRF-206ENST00000429895 LINC01561Q8N1V8 128 aa10.72□□□□□ -0.69
PTPRF-206ENST00000429895 SMIM29Q86T20 159 aa10.72□□□□□ -0.69
PTPRF-206ENST00000429895 TMEM254Q8TBM7 123 aa10.72□□□□□ -0.69
PTPRF-206ENST00000429895 AGRNO00468 2067 aa10.72□□□□□ -0.69
PTPRF-206ENST00000429895 PTPRSQ13332 1948 aa10.71□□□□□ -0.69
PTPRF-206ENST00000429895 COL5A1P20908 1838 aaPredicted RBP10.71□□□□□ -0.69
PTPRF-206ENST00000429895 hDV103S1A0JD37 113 aa10.71□□□□□ -0.69
PTPRF-206ENST00000429895 LINC00167Q96N53 147 aa10.71□□□□□ -0.7
PTPRF-206ENST00000429895 CHTF8P0CG12 524 aa10.71□□□□□ -0.7
PTPRF-206ENST00000429895 COX8CQ7Z4L0 72 aa10.7□□□□□ -0.7
PTPRF-206ENST00000429895 C11orf72Q8NBR9 251 aa10.69□□□□□ -0.7
PTPRF-206ENST00000429895 PHF5AQ7RTV0 110 aaKnown RBP10.69□□□□□ -0.7
PTPRF-206ENST00000429895 GOLGB1Q14789 3259 aaKnown RBP10.69□□□□□ -0.7
PTPRF-206ENST00000429895 C2CD3Q4AC94 2353 aa10.68□□□□□ -0.7
PTPRF-206ENST00000429895 FAM229AH3BQW9 127 aa10.67□□□□□ -0.7
PTPRF-206ENST00000429895 PLA2G1BP04054 148 aaKnown RBP10.67□□□□□ -0.7
PTPRF-206ENST00000429895 TET2Q6N021 2002 aaPredicted RBP10.67□□□□□ -0.7
PTPRF-206ENST00000429895 ADAMTS20P59510 1910 aa10.67□□□□□ -0.7
PTPRF-206ENST00000429895 C6orf48Q9UBA6 75 aa10.66□□□□□ -0.7
PTPRF-206ENST00000429895 CPAMD8Q8IZJ3 1885 aa10.66□□□□□ -0.7
PTPRF-206ENST00000429895 SPATA3Q8NHX4 192 aa10.65□□□□□ -0.7
PTPRF-206ENST00000429895 NCOR2Q9Y618 2525 aa10.65□□□□□ -0.7
PTPRF-206ENST00000429895 RTL8CO15255 209 aa10.65□□□□□ -0.7
PTPRF-206ENST00000429895 LINC00315P59091 139 aa10.65□□□□□ -0.71
PTPRF-206ENST00000429895 C10orf142B7Z368 130 aa10.64□□□□□ -0.71
PTPRF-206ENST00000429895 MUC4Q99102 2169 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 A0A1B0GU69 56 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 IGF2RP11717 2491 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 PIEZO2Q9H5I5 2752 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 C16orf90A8MZG2 172 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 KIF25-AS1Q9Y6Z4 181 aa10.63□□□□□ -0.71
PTPRF-206ENST00000429895 CXCL6P80162 114 aa10.62□□□□□ -0.71
PTPRF-206ENST00000429895 TYMSOSQ8TAI1 123 aa10.62□□□□□ -0.71
PTPRF-206ENST00000429895 KRTAP24-1Q3LI83 254 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms