RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 NXT2Q9NPJ8 142 aaKnown RBP8.67□□□□□ -1.02
SDC1-204ENST00000429035 CDKN2A-AS1Q9UH64 79 aa8.67□□□□□ -1.02
SDC1-204ENST00000429035 IGIPA6NJ69 53 aa8.66□□□□□ -1.02
SDC1-204ENST00000429035 F8VRH5 84 aa8.66□□□□□ -1.02
SDC1-204ENST00000429035 TSPAN13O95857 204 aa8.66□□□□□ -1.02
SDC1-204ENST00000429035 SEC11AP67812 179 aa8.66□□□□□ -1.02
SDC1-204ENST00000429035 PAPPA-AS1Q5QFB9 102 aa8.66□□□□□ -1.02
SDC1-204ENST00000429035 MRPL55Q7Z7F7 128 aaKnown RBP8.65□□□□□ -1.02
SDC1-204ENST00000429035 K7EMI3 77 aa8.64□□□□□ -1.03
SDC1-204ENST00000429035 NPSP0C0P6 89 aa8.64□□□□□ -1.03
SDC1-204ENST00000429035 CXCL5P42830 114 aa8.64□□□□□ -1.03
SDC1-204ENST00000429035 KIAA1644Q3SXP7 199 aa8.64□□□□□ -1.03
SDC1-204ENST00000429035 CARHSP1Q9Y2V2 147 aaKnown RBP8.64□□□□□ -1.03
SDC1-204ENST00000429035 GAGE10A6NGK3 116 aa8.63□□□□□ -1.03
SDC1-204ENST00000429035 RPL28P46779 137 aaKnown RBP8.63□□□□□ -1.03
SDC1-204ENST00000429035 FAM19A3Q7Z5A8 133 aa8.63□□□□□ -1.03
SDC1-204ENST00000429035 TIMM17AQ99595 171 aa8.63□□□□□ -1.03
SDC1-204ENST00000429035 RPL37AP8A6NKH3 93 aa8.62□□□□□ -1.03
SDC1-204ENST00000429035 G0S2P27469 103 aa8.62□□□□□ -1.03
SDC1-204ENST00000429035 RAB14P61106 215 aa8.62□□□□□ -1.03
SDC1-204ENST00000429035 TOMM6Q96B49 74 aa8.62□□□□□ -1.03
SDC1-204ENST00000429035 SCGB3A1Q96QR1 104 aa8.62□□□□□ -1.03
SDC1-204ENST00000429035 SMIM1B2RUZ4 78 aa8.61□□□□□ -1.03
SDC1-204ENST00000429035 BCE1O60756 84 aa8.61□□□□□ -1.03
SDC1-204ENST00000429035 COX7B2Q8TF08 81 aa8.61□□□□□ -1.03
SDC1-204ENST00000429035 TP73-AS1Q9UF72 201 aa8.61□□□□□ -1.03
SDC1-204ENST00000429035 A0A087X002 238 aa8.6□□□□□ -1.03
SDC1-204ENST00000429035 TYMSOSQ8TAI1 123 aa8.6□□□□□ -1.03
SDC1-204ENST00000429035 SPINK8P0C7L1 97 aa8.59□□□□□ -1.03
SDC1-204ENST00000429035 UBE2AP49459 152 aa8.59□□□□□ -1.03
SDC1-204ENST00000429035 RAB5BP61020 215 aa8.59□□□□□ -1.03
SDC1-204ENST00000429035 NKAPP1Q8N9T2 125 aa8.59□□□□□ -1.03
SDC1-204ENST00000429035 LINC00167Q96N53 147 aa8.59□□□□□ -1.03
SDC1-204ENST00000429035 CRYGAP11844 174 aa8.58□□□□□ -1.04
SDC1-204ENST00000429035 ADCYAP1P18509 176 aa8.58□□□□□ -1.04
SDC1-204ENST00000429035 PDZD11Q5EBL8 140 aa8.58□□□□□ -1.04
SDC1-204ENST00000429035 ERASQ7Z444 233 aa8.58□□□□□ -1.04
SDC1-204ENST00000429035 TINCRA0A1B0GVN0 87 aa8.57□□□□□ -1.04
SDC1-204ENST00000429035 ANAPC11Q9NYG5 84 aa8.57□□□□□ -1.04
SDC1-204ENST00000429035 IGKV2-28A0A075B6P5 120 aa8.55□□□□□ -1.04
SDC1-204ENST00000429035 SCO1O75880 301 aa8.55□□□□□ -1.04
SDC1-204ENST00000429035 IGKV2D-28P01615 120 aa8.55□□□□□ -1.04
SDC1-204ENST00000429035 SMCO4Q9NRQ5 59 aa8.55□□□□□ -1.04
SDC1-204ENST00000429035 A0A0U1RQV1 116 aa8.54□□□□□ -1.04
SDC1-204ENST00000429035 ATP5LO75964 103 aa8.54□□□□□ -1.04
SDC1-204ENST00000429035 FA2HQ7L5A8 372 aa8.54□□□□□ -1.04
SDC1-204ENST00000429035 IGLV5-45A0A087WSX0 123 aa8.53□□□□□ -1.04
SDC1-204ENST00000429035 H3BRM9 83 aa8.53□□□□□ -1.04
SDC1-204ENST00000429035 S100PP25815 95 aa8.53□□□□□ -1.04
SDC1-204ENST00000429035 PFN2P35080 140 aa8.53□□□□□ -1.04
SDC1-204ENST00000429035 CST9LQ9H4G1 147 aa8.53□□□□□ -1.04
SDC1-204ENST00000429035 NDUFA6P56556 154 aa8.52□□□□□ -1.05
SDC1-204ENST00000429035 PMVKQ15126 192 aa8.52□□□□□ -1.05
SDC1-204ENST00000429035 RETNLBQ9BQ08 111 aa8.52□□□□□ -1.05
SDC1-204ENST00000429035 IGLV5-37A0A075B6J1 123 aa8.51□□□□□ -1.05
SDC1-204ENST00000429035 TRAV9-1A0A075B6T8 112 aa8.51□□□□□ -1.05
SDC1-204ENST00000429035 LINC01549A6NIU2 74 aa8.51□□□□□ -1.05
SDC1-204ENST00000429035 PRLHP81277 87 aa8.51□□□□□ -1.05
SDC1-204ENST00000429035 KRTAP13-2Q52LG2 175 aa8.5□□□□□ -1.05
SDC1-204ENST00000429035 FAM19A1Q7Z5A9 133 aa8.5□□□□□ -1.05
SDC1-204ENST00000429035 MRPL18Q9H0U6 180 aaKnown RBP8.5□□□□□ -1.05
SDC1-204ENST00000429035 IFITM2Q01629 132 aa8.49□□□□□ -1.05
SDC1-204ENST00000429035 CLLU1Q5K131 121 aa8.49□□□□□ -1.05
SDC1-204ENST00000429035 LINC00304Q8N9R0 145 aa8.49□□□□□ -1.05
SDC1-204ENST00000429035 GNB1LQ9BYB4 327 aa8.49□□□□□ -1.05
SDC1-204ENST00000429035 IGKV2D-26A0A0A0MRZ7 120 aa8.48□□□□□ -1.05
SDC1-204ENST00000429035 FABP9Q0Z7S8 132 aa8.48□□□□□ -1.05
SDC1-204ENST00000429035 KRTAP13-1Q8IUC0 172 aa8.48□□□□□ -1.05
SDC1-204ENST00000429035 TMEM218A2RU14 115 aa8.47□□□□□ -1.05
SDC1-204ENST00000429035 LINC01546A6NGU7 62 aa8.47□□□□□ -1.05
SDC1-204ENST00000429035 TMEM238C9JI98 176 aa8.47□□□□□ -1.05
SDC1-204ENST00000429035 ZNF625Q96I27 306 aaPredicted RBP8.47□□□□□ -1.05
SDC1-204ENST00000429035 MUC2Q02817 5179 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 IGLC3P0DOY3 106 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 FAM229BQ4G0N7 80 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 UQCC3Q6UW78 93 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 SND1-IT1Q9HBX3 110 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 ERG28Q9UKR5 140 aa8.46□□□□□ -1.06
SDC1-204ENST00000429035 VPREB1P12018 145 aa8.45□□□□□ -1.06
SDC1-204ENST00000429035 ZNF22P17026 224 aaPredicted RBP8.45□□□□□ -1.06
SDC1-204ENST00000429035 TMEM126AQ9H061 195 aa8.45□□□□□ -1.06
SDC1-204ENST00000429035 RPL24P83731 157 aaKnown RBP8.44□□□□□ -1.06
SDC1-204ENST00000429035 COX19Q49B96 90 aa8.44□□□□□ -1.06
SDC1-204ENST00000429035 IGLV5-39A0A0G2JS06 123 aa8.43□□□□□ -1.06
SDC1-204ENST00000429035 PMCHL1Q16048 86 aa8.43□□□□□ -1.06
SDC1-204ENST00000429035 CDIP1Q9H305 208 aa8.43□□□□□ -1.06
SDC1-204ENST00000429035 TMEM170BQ5T4T1 132 aa8.42□□□□□ -1.06
SDC1-204ENST00000429035 CBLN2Q8IUK8 224 aa8.42□□□□□ -1.06
SDC1-204ENST00000429035 HIGD2AQ9BW72 106 aa8.42□□□□□ -1.06
SDC1-204ENST00000429035 SEC11CQ9BY50 192 aa8.42□□□□□ -1.06
SDC1-204ENST00000429035 A0A096LNJ9 63 aa8.41□□□□□ -1.06
SDC1-204ENST00000429035 M0R378 163 aa8.41□□□□□ -1.06
SDC1-204ENST00000429035 HBDP02042 147 aa8.41□□□□□ -1.06
SDC1-204ENST00000429035 C3orf22Q8N5N4 141 aa8.41□□□□□ -1.06
SDC1-204ENST00000429035 RPS10P5Q9NQ39 176 aa8.41□□□□□ -1.06
SDC1-204ENST00000429035 IGLV7-46A0A075B6I9 117 aa8.4□□□□□ -1.06
SDC1-204ENST00000429035 A0A0U1RRA0 63 aa8.4□□□□□ -1.06
SDC1-204ENST00000429035 C11orf86A6NJI1 115 aa8.4□□□□□ -1.06
SDC1-204ENST00000429035 COMMD7Q86VX2 200 aa8.4□□□□□ -1.06
SDC1-204ENST00000429035 Q8NDZ9 215 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms