RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SPANXDQ9BXN6 97 aa8.23□□□□□ -1.09
PTPRN-204ENST00000423636 SPANXCQ9NY87 97 aa8.23□□□□□ -1.09
PTPRN-204ENST00000423636 SLPIP03973 132 aa8.23□□□□□ -1.09
PTPRN-204ENST00000423636 FAM218AQ96MZ4 157 aa8.23□□□□□ -1.09
PTPRN-204ENST00000423636 H7C423 109 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 TEN1Q86WV5 123 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 LINC00337Q8N6G1 96 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 SND1-IT1Q9HBX3 110 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 COL7A1Q02388 2944 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 ATXN8Q156A1 80 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 C3orf56Q8N813 242 aa8.22□□□□□ -1.09
PTPRN-204ENST00000423636 XGP55808 180 aa8.21□□□□□ -1.1
PTPRN-204ENST00000423636 Q8NAQ8 132 aa8.21□□□□□ -1.1
PTPRN-204ENST00000423636 TRBV20-1A0A075B6N2 111 aa8.21□□□□□ -1.1
PTPRN-204ENST00000423636 MALP21145 153 aa8.21□□□□□ -1.1
PTPRN-204ENST00000423636 CMYA5Q8N3K9 4069 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 CCL18P55774 89 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 LYRM7Q5U5X0 104 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 CHCHD10Q8WYQ3 142 aaPredicted RBP8.2□□□□□ -1.1
PTPRN-204ENST00000423636 CSDC2Q9Y534 153 aaKnown RBP8.2□□□□□ -1.1
PTPRN-204ENST00000423636 TRAV8-4A0A0B4J246 113 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 COX6CP09669 75 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 Q6ZTC4 211 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 KIR2DL5BQ8NHK3 375 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 CDIP1Q9H305 208 aa8.2□□□□□ -1.1
PTPRN-204ENST00000423636 APOC4P55056 127 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 REG3AQ06141 175 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 C10orf25Q5T742 122 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 UBE2WQ96B02 151 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 IGKV2-28A0A075B6P5 120 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 IGKV2D-28P01615 120 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 SS18Q15532 418 aa8.19□□□□□ -1.1
PTPRN-204ENST00000423636 NANOS2P60321 138 aaKnown RBP8.19□□□□□ -1.1
PTPRN-204ENST00000423636 HIGD2BQ4VC39 106 aa8.18□□□□□ -1.1
PTPRN-204ENST00000423636 PPDPFLQ8WWR9 84 aa8.18□□□□□ -1.1
PTPRN-204ENST00000423636 TRBV30A0A0K0K1B3 111 aa8.18□□□□□ -1.1
PTPRN-204ENST00000423636 WFDC10BQ8IUB3 73 aa8.18□□□□□ -1.1
PTPRN-204ENST00000423636 DEFB121Q5J5C9 76 aa8.17□□□□□ -1.1
PTPRN-204ENST00000423636 NCR3O14931 201 aa8.17□□□□□ -1.1
PTPRN-204ENST00000423636 SPART-AS1P0CW21 52 aa8.17□□□□□ -1.1
PTPRN-204ENST00000423636 TTC32Q5I0X7 151 aa8.17□□□□□ -1.1
PTPRN-204ENST00000423636 UNQ6190/PRO20217Q6UXQ8 127 aa8.17□□□□□ -1.1
PTPRN-204ENST00000423636 A0A087WZ39 114 aa8.16□□□□□ -1.1
PTPRN-204ENST00000423636 A0A087WYN8 130 aa8.16□□□□□ -1.1
PTPRN-204ENST00000423636 CRPP02741 224 aa8.16□□□□□ -1.1
PTPRN-204ENST00000423636 C9orf129Q5T035 196 aaKnown RBP8.16□□□□□ -1.1
PTPRN-204ENST00000423636 XAGE1AQ9HD64 81 aa8.16□□□□□ -1.1
PTPRN-204ENST00000423636 SMIM11BQ8TCY0 68 aa8.16□□□□□ -1.1
PTPRN-204ENST00000423636 A0A0J9YWU9 116 aa8.15□□□□□ -1.1
PTPRN-204ENST00000423636 Q8NDZ9 215 aa8.15□□□□□ -1.1
PTPRN-204ENST00000423636 SS18L2Q9UHA2 77 aa8.15□□□□□ -1.1
PTPRN-204ENST00000423636 TRBV10-2A0A0K0K1G8 114 aa8.14□□□□□ -1.11
PTPRN-204ENST00000423636 LST1O00453 97 aa8.14□□□□□ -1.11
PTPRN-204ENST00000423636 COX7A2LO14548 114 aa8.14□□□□□ -1.11
PTPRN-204ENST00000423636 IFITM1P13164 125 aa8.14□□□□□ -1.11
PTPRN-204ENST00000423636 SVIPQ8NHG7 77 aa8.14□□□□□ -1.11
PTPRN-204ENST00000423636 LYRM9A8MSI8 78 aa8.13□□□□□ -1.11
PTPRN-204ENST00000423636 CFAP161Q6P656 301 aa8.13□□□□□ -1.11
PTPRN-204ENST00000423636 RNF183Q96D59 192 aa8.13□□□□□ -1.11
PTPRN-204ENST00000423636 ANAPC13Q9BS18 74 aa8.13□□□□□ -1.11
PTPRN-204ENST00000423636 LINC00612Q8N6U2 182 aa8.13□□□□□ -1.11
PTPRN-204ENST00000423636 SMIM9A6NGZ8 99 aa8.12□□□□□ -1.11
PTPRN-204ENST00000423636 LECT2O14960 151 aa8.12□□□□□ -1.11
PTPRN-204ENST00000423636 TIMM17BO60830 172 aa8.12□□□□□ -1.11
PTPRN-204ENST00000423636 KPRPQ5T749 579 aaPredicted RBP8.12□□□□□ -1.11
PTPRN-204ENST00000423636 BAALC-AS2P0C853 105 aa8.11□□□□□ -1.11
PTPRN-204ENST00000423636 B5MCH6 92 aa8.11□□□□□ -1.11
PTPRN-204ENST00000423636 HERV-K104P63124 156 aa8.11□□□□□ -1.11
PTPRN-204ENST00000423636 MRPL23Q16540 153 aaKnown RBP8.11□□□□□ -1.11
PTPRN-204ENST00000423636 C15orf53Q8NAA6 179 aa8.11□□□□□ -1.11
PTPRN-204ENST00000423636 SPATA25Q9BR10 227 aa8.11□□□□□ -1.11
PTPRN-204ENST00000423636 MIFP14174 115 aa8.1□□□□□ -1.11
PTPRN-204ENST00000423636 LYPD5Q6UWN5 251 aa8.1□□□□□ -1.11
PTPRN-204ENST00000423636 ENHOQ6UWT2 76 aa8.09□□□□□ -1.11
PTPRN-204ENST00000423636 SPAG11BQ08648 103 aa8.09□□□□□ -1.11
PTPRN-204ENST00000423636 WFDC9Q8NEX5 89 aa8.09□□□□□ -1.11
PTPRN-204ENST00000423636 SHISA2Q6UWI4 295 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 FAM19A3Q7Z5A8 133 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 SRRM2Q9UQ35 2752 aaKnown RBP8.08□□□□□ -1.12
PTPRN-204ENST00000423636 KIAA0087Q14695 138 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 CD164L2Q6UWJ8 174 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 DNAH10Q8IVF4 4471 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 A0A1B0GUV1 79 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 RPL18AQ02543 176 aaKnown RBP8.08□□□□□ -1.12
PTPRN-204ENST00000423636 GAGE2EQ4V326 116 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 GAGE2DQ9UEU5 116 aa8.08□□□□□ -1.12
PTPRN-204ENST00000423636 ESRGQ1W209 222 aa8.07□□□□□ -1.12
PTPRN-204ENST00000423636 C14orf132Q9NPU4 83 aa8.07□□□□□ -1.12
PTPRN-204ENST00000423636 GAGE2AQ6NT46 116 aa8.06□□□□□ -1.12
PTPRN-204ENST00000423636 IBA57-AS1B1ANH7 110 aa8.06□□□□□ -1.12
PTPRN-204ENST00000423636 DNAL4O96015 105 aa8.06□□□□□ -1.12
PTPRN-204ENST00000423636 IGKV2D-24A0A075B6R9 120 aa8.06□□□□□ -1.12
PTPRN-204ENST00000423636 SNCGO76070 127 aa8.06□□□□□ -1.12
PTPRN-204ENST00000423636 DEFB131BA0A096LNP1 70 aa8.05□□□□□ -1.12
PTPRN-204ENST00000423636 TRAV13-2A0A0B4J235 113 aa8.05□□□□□ -1.12
PTPRN-204ENST00000423636 LELP1Q5T871 98 aa8.04□□□□□ -1.12
PTPRN-204ENST00000423636 Q8IZM0 81 aa8.04□□□□□ -1.12
PTPRN-204ENST00000423636 C22orf24Q9Y442 160 aa8.04□□□□□ -1.12
PTPRN-204ENST00000423636 C6orf99Q4VX62 202 aa8.03□□□□□ -1.12
PTPRN-204ENST00000423636 S100A7L2Q5SY68 101 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms