RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 KRTAP1-4P0C5Y4 121 aa6.97□□□□□ -1.29
SQSTM1-203ENST00000422245 CXCL5P42830 114 aa6.97□□□□□ -1.29
SQSTM1-203ENST00000422245 TOMM6Q96B49 74 aa6.97□□□□□ -1.29
SQSTM1-203ENST00000422245 CDKN2A-AS1Q9UH64 79 aa6.97□□□□□ -1.29
SQSTM1-203ENST00000422245 TRAV9-1A0A075B6T8 112 aa6.96□□□□□ -1.3
SQSTM1-203ENST00000422245 F8VRH5 84 aa6.96□□□□□ -1.3
SQSTM1-203ENST00000422245 RPL13AP40429 203 aaKnown RBP6.96□□□□□ -1.3
SQSTM1-203ENST00000422245 LINC01549A6NIU2 74 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 NUPR1O60356 82 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 LBHQ53QV2 105 aaPredicted RBP6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 CLLU1Q5K131 121 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 ERASQ7Z444 233 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 LINC00469Q8N7U9 141 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 XAGE1AQ9HD64 81 aa6.95□□□□□ -1.3
SQSTM1-203ENST00000422245 ZNF861PO60384 105 aa6.94□□□□□ -1.3
SQSTM1-203ENST00000422245 SCGB3A1Q96QR1 104 aa6.94□□□□□ -1.3
SQSTM1-203ENST00000422245 TP73-AS1Q9UF72 201 aa6.94□□□□□ -1.3
SQSTM1-203ENST00000422245 C22orf24Q9Y442 160 aa6.94□□□□□ -1.3
SQSTM1-203ENST00000422245 SMIM1B2RUZ4 78 aa6.93□□□□□ -1.3
SQSTM1-203ENST00000422245 KIAA1644Q3SXP7 199 aa6.93□□□□□ -1.3
SQSTM1-203ENST00000422245 UQCC3Q6UW78 93 aa6.93□□□□□ -1.3
SQSTM1-203ENST00000422245 CARHSP1Q9Y2V2 147 aaKnown RBP6.93□□□□□ -1.3
SQSTM1-203ENST00000422245 IGLV5-45A0A087WSX0 123 aa6.92□□□□□ -1.3
SQSTM1-203ENST00000422245 TINCRA0A1B0GVN0 87 aa6.92□□□□□ -1.3
SQSTM1-203ENST00000422245 ADCYAP1P18509 176 aa6.92□□□□□ -1.3
SQSTM1-203ENST00000422245 PDZD11Q5EBL8 140 aa6.92□□□□□ -1.3
SQSTM1-203ENST00000422245 MRPL55Q7Z7F7 128 aaKnown RBP6.92□□□□□ -1.3
SQSTM1-203ENST00000422245 TMEM218A2RU14 115 aa6.91□□□□□ -1.3
SQSTM1-203ENST00000422245 LINC01546A6NGU7 62 aa6.91□□□□□ -1.3
SQSTM1-203ENST00000422245 S100PP25815 95 aa6.91□□□□□ -1.3
SQSTM1-203ENST00000422245 COX7B2Q8TF08 81 aa6.91□□□□□ -1.3
SQSTM1-203ENST00000422245 GNB1LQ9BYB4 327 aa6.91□□□□□ -1.3
SQSTM1-203ENST00000422245 BCE1O60756 84 aa6.9□□□□□ -1.3
SQSTM1-203ENST00000422245 RPL28P46779 137 aaKnown RBP6.9□□□□□ -1.3
SQSTM1-203ENST00000422245 COX19Q49B96 90 aa6.9□□□□□ -1.3
SQSTM1-203ENST00000422245 CST9LQ9H4G1 147 aa6.89□□□□□ -1.31
SQSTM1-203ENST00000422245 H3BRM9 83 aa6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 PMVKQ15126 192 aa6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 FA2HQ7L5A8 372 aa6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 SEC11CQ9BY50 192 aa6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 MRPL18Q9H0U6 180 aaKnown RBP6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 LPAP08519 4548 aa6.88□□□□□ -1.31
SQSTM1-203ENST00000422245 IGLV5-37A0A075B6J1 123 aa6.87□□□□□ -1.31
SQSTM1-203ENST00000422245 SPINK8P0C7L1 97 aa6.87□□□□□ -1.31
SQSTM1-203ENST00000422245 SMCO4Q9NRQ5 59 aa6.87□□□□□ -1.31
SQSTM1-203ENST00000422245 ATP5LO75964 103 aa6.86□□□□□ -1.31
SQSTM1-203ENST00000422245 PRR4Q16378 134 aa6.86□□□□□ -1.31
SQSTM1-203ENST00000422245 NKAPP1Q8N9T2 125 aa6.86□□□□□ -1.31
SQSTM1-203ENST00000422245 LINC00167Q96N53 147 aa6.86□□□□□ -1.31
SQSTM1-203ENST00000422245 RPL37AP8A6NKH3 93 aa6.85□□□□□ -1.31
SQSTM1-203ENST00000422245 IGLC3P0DOY3 106 aa6.85□□□□□ -1.31
SQSTM1-203ENST00000422245 FABP9Q0Z7S8 132 aa6.85□□□□□ -1.31
SQSTM1-203ENST00000422245 GAGE10A6NGK3 116 aa6.84□□□□□ -1.31
SQSTM1-203ENST00000422245 CRYGAP11844 174 aa6.84□□□□□ -1.31
SQSTM1-203ENST00000422245 RHEBQ15382 184 aa6.84□□□□□ -1.31
SQSTM1-203ENST00000422245 A0A087X002 238 aa6.83□□□□□ -1.32
SQSTM1-203ENST00000422245 IGLV5-39A0A0G2JS06 123 aa6.83□□□□□ -1.32
SQSTM1-203ENST00000422245 UBE2AP49459 152 aa6.83□□□□□ -1.32
SQSTM1-203ENST00000422245 RAB5BP61020 215 aa6.83□□□□□ -1.32
SQSTM1-203ENST00000422245 COMMD7Q86VX2 200 aa6.83□□□□□ -1.32
SQSTM1-203ENST00000422245 IFITM2Q01629 132 aa6.82□□□□□ -1.32
SQSTM1-203ENST00000422245 KRTAP13-1Q8IUC0 172 aa6.82□□□□□ -1.32
SQSTM1-203ENST00000422245 TYMSOSQ8TAI1 123 aa6.82□□□□□ -1.32
SQSTM1-203ENST00000422245 A0A096LNJ9 63 aa6.81□□□□□ -1.32
SQSTM1-203ENST00000422245 HBDP02042 147 aa6.81□□□□□ -1.32
SQSTM1-203ENST00000422245 ZNF22P17026 224 aaPredicted RBP6.81□□□□□ -1.32
SQSTM1-203ENST00000422245 C10orf91Q5T1B1 145 aa6.81□□□□□ -1.32
SQSTM1-203ENST00000422245 IGKV2-28A0A075B6P5 120 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 TSPAN13O95857 204 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 IGKV2D-28P01615 120 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 PFN2P35080 140 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 NDUFA6P56556 154 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 FAM229BQ4G0N7 80 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 SFTA2Q6UW10 78 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 RPS10P5Q9NQ39 176 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 ERG28Q9UKR5 140 aa6.8□□□□□ -1.32
SQSTM1-203ENST00000422245 VPREB1P12018 145 aa6.79□□□□□ -1.32
SQSTM1-203ENST00000422245 COX17Q14061 63 aa6.79□□□□□ -1.32
SQSTM1-203ENST00000422245 C18orf32Q8TCD1 76 aa6.79□□□□□ -1.32
SQSTM1-203ENST00000422245 SND1-IT1Q9HBX3 110 aa6.79□□□□□ -1.32
SQSTM1-203ENST00000422245 SCO1O75880 301 aa6.78□□□□□ -1.32
SQSTM1-203ENST00000422245 LINC00614P0C842 121 aa6.78□□□□□ -1.32
SQSTM1-203ENST00000422245 RPL24P83731 157 aaKnown RBP6.78□□□□□ -1.32
SQSTM1-203ENST00000422245 URB1-AS1Q96HZ7 61 aa6.78□□□□□ -1.32
SQSTM1-203ENST00000422245 TRAPPC1Q9Y5R8 145 aa6.78□□□□□ -1.32
SQSTM1-203ENST00000422245 KRTAP13-2Q52LG2 175 aa6.77□□□□□ -1.33
SQSTM1-203ENST00000422245 TMEM126AQ9H061 195 aa6.77□□□□□ -1.33
SQSTM1-203ENST00000422245 ANAPC11Q9NYG5 84 aa6.77□□□□□ -1.33
SQSTM1-203ENST00000422245 C11orf86A6NJI1 115 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 PRLHP81277 87 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 PMCHL1Q16048 86 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 TMEM170BQ5T4T1 132 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 FAM19A1Q7Z5A9 133 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 BAGE3Q86Y29 109 aa6.76□□□□□ -1.33
SQSTM1-203ENST00000422245 MUC2Q02817 5179 aa6.75□□□□□ -1.33
SQSTM1-203ENST00000422245 A0A0U1RQV1 116 aa6.75□□□□□ -1.33
SQSTM1-203ENST00000422245 TMEM238C9JI98 176 aa6.75□□□□□ -1.33
SQSTM1-203ENST00000422245 LINC00304Q8N9R0 145 aa6.75□□□□□ -1.33
SQSTM1-203ENST00000422245 ZNF625Q96I27 306 aaPredicted RBP6.75□□□□□ -1.33
SQSTM1-203ENST00000422245 IGKV2D-26A0A0A0MRZ7 120 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms