RNA–Protein interactions for RNA: ENST00000420720.5

RFX3-205, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 492 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-205	ENST00000420720	IFI27	P40305	119 aa	Predicted RBP	4.25	□□□□□ -1.73
RFX3-205	ENST00000420720	C9orf129	Q5T035	196 aa	Known RBP	4.25	□□□□□ -1.73
RFX3-205	ENST00000420720	LINC00242	Q5T6M2	205 aa		4.25	□□□□□ -1.73
RFX3-205	ENST00000420720	PACRG	Q96M98	296 aa	Predicted RBP	4.25	□□□□□ -1.73
RFX3-205	ENST00000420720	TRBV30	A0A0K0K1B3	111 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720		A0A1B0GXF2	115 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720	NDUFC2-KCTD14	E9PQ53	114 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720		F8W036	122 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720	S100A8	P05109	93 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720	RAB5A	P20339	215 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720	ZC2HC1B	Q5TFG8	222 aa		4.24	□□□□□ -1.73
RFX3-205	ENST00000420720	LOC389332	A0A1B0GUA5	103 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	ZNF861P	O60384	105 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	TSPAN13	O95857	204 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	PPBP	P02775	128 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	RPL13A	P40429	203 aa	Known RBP	4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	TMEM136	Q6ZRR5	245 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	ORMDL3	Q8N138	153 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	LINC00469	Q8N7U9	141 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	PRELID3A	Q96N28	172 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	TOMM7	Q9P0U1	55 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	PYGO1	Q9Y3Y4	419 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	C22orf24	Q9Y442	160 aa		4.23	□□□□□ -1.73
RFX3-205	ENST00000420720	PRSS2	P07478	247 aa		4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	PEA15	Q15121	130 aa		4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	TEX43	Q6ZNM6	134 aa		4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	LINC01561	Q8N1V8	128 aa		4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	TMEM141	Q96I45	108 aa		4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	CARHSP1	Q9Y2V2	147 aa	Known RBP	4.22	□□□□□ -1.73
RFX3-205	ENST00000420720	NUPR1	O60356	82 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	CKS1B	P61024	79 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	C6orf226	Q5I0X4	101 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	C2orf66	Q6UXQ4	117 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720		Q6ZN92	141 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	C2orf88	Q9BSF0	95 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	CTDSP1	Q9GZU7	261 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	MAP1LC3A	Q9H492	121 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	XAGE1A	Q9HD64	81 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	SSPO	A2VEC9	5147 aa		4.21	□□□□□ -1.74
RFX3-205	ENST00000420720	PRSS47	A8MTI9	375 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	LBH	Q53QV2	105 aa	Predicted RBP	4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	LINC00173	Q6ZV60	143 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	AMELX	Q99217	191 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	ALKBH7	Q9BT30	221 aa	Predicted RBP	4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	VCX2	Q9H322	139 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	CYSLTR1	Q9Y271	337 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720	MUC17	Q685J3	4493 aa		4.2	□□□□□ -1.74
RFX3-205	ENST00000420720		A0A087X002	238 aa		4.19	□□□□□ -1.74
RFX3-205	ENST00000420720	ATP5L2	Q7Z4Y8	100 aa		4.19	□□□□□ -1.74
RFX3-205	ENST00000420720		Q8IZM0	81 aa		4.19	□□□□□ -1.74
RFX3-205	ENST00000420720		Q8N8P6	123 aa		4.19	□□□□□ -1.74
RFX3-205	ENST00000420720	TYMSOS	Q8TAI1	123 aa		4.19	□□□□□ -1.74
RFX3-205	ENST00000420720	BCE1	O60756	84 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	CRYGA	P11844	174 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	RPL28	P46779	137 aa	Known RBP	4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	ORMDL2	Q53FV1	153 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	FAM19A3	Q7Z5A8	133 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	MRPL55	Q7Z7F7	128 aa	Known RBP	4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	LINC00167	Q96N53	147 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	ANAPC11	Q9NYG5	84 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	CDKN2A-AS1	Q9UH64	79 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	LAMTOR2	Q9Y2Q5	125 aa		4.18	□□□□□ -1.74
RFX3-205	ENST00000420720	GAGE10	A6NGK3	116 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	IGIP	A6NJ69	53 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	RPL37AP8	A6NKH3	93 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720		F8VRH5	84 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	HERVK_113	P63121	156 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	GEMIN7	Q9H840	131 aa	Known RBP	4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	TP73-AS1	Q9UF72	201 aa		4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	MACF1	Q9UPN3	7388 aa	Known RBP	4.17	□□□□□ -1.74
RFX3-205	ENST00000420720	NPS	P0C0P6	89 aa		4.16	□□□□□ -1.74
RFX3-205	ENST00000420720	SEC11A	P67812	179 aa		4.16	□□□□□ -1.74
RFX3-205	ENST00000420720	RETNLB	Q9BQ08	111 aa		4.16	□□□□□ -1.74
RFX3-205	ENST00000420720	USH2A	O75445	5202 aa		4.15	□□□□□ -1.74
RFX3-205	ENST00000420720		A0A1B0GVG6	124 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720		K7EMI3	77 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	CXCL5	P42830	114 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	UBE2A	P49459	152 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	RAB5B	P61020	215 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	KRTAP13-2	Q52LG2	175 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	PAPPA-AS1	Q5QFB9	102 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	COX7B2	Q8TF08	81 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	TIMM17A	Q99595	171 aa		4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	NXT2	Q9NPJ8	142 aa	Known RBP	4.15	□□□□□ -1.75
RFX3-205	ENST00000420720	SMIM1	B2RUZ4	78 aa		4.14	□□□□□ -1.75
RFX3-205	ENST00000420720	MT-ND4L	P03901	98 aa		4.14	□□□□□ -1.75
RFX3-205	ENST00000420720	KIAA1644	Q3SXP7	199 aa		4.14	□□□□□ -1.75
RFX3-205	ENST00000420720	TOMM6	Q96B49	74 aa		4.14	□□□□□ -1.75
RFX3-205	ENST00000420720	SCO1	O75880	301 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	ADCYAP1	P18509	176 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	G0S2	P27469	103 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	PNRC1	Q12796	327 aa	Predicted RBP	4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	PDZD11	Q5EBL8	140 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	ERAS	Q7Z444	233 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	KRTAP13-1	Q8IUC0	172 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	NKAPP1	Q8N9T2	125 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	SCGB3A1	Q96QR1	104 aa		4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.13	□□□□□ -1.75
RFX3-205	ENST00000420720	IGLV5-37	A0A075B6J1	123 aa		4.12	□□□□□ -1.75
RFX3-205	ENST00000420720	IGKV2-28	A0A075B6P5	120 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms