RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 ALKBH7Q9BT30 221 aaPredicted RBP10.7□□□□□ -0.7
PDLIM2-208ENST00000416159 GEMIN7Q9H840 131 aaKnown RBP10.7□□□□□ -0.7
PDLIM2-208ENST00000416159 H0Y9J4 135 aa10.68□□□□□ -0.7
PDLIM2-208ENST00000416159 ERASQ7Z444 233 aa10.68□□□□□ -0.7
PDLIM2-208ENST00000416159 CDKN2A-AS1Q9UH64 79 aa10.68□□□□□ -0.7
PDLIM2-208ENST00000416159 LINC01549A6NIU2 74 aa10.67□□□□□ -0.7
PDLIM2-208ENST00000416159 S100PP25815 95 aa10.67□□□□□ -0.7
PDLIM2-208ENST00000416159 SCGB3A1Q96QR1 104 aa10.67□□□□□ -0.7
PDLIM2-208ENST00000416159 GNB1LQ9BYB4 327 aa10.67□□□□□ -0.7
PDLIM2-208ENST00000416159 SEC11CQ9BY50 192 aa10.66□□□□□ -0.7
PDLIM2-208ENST00000416159 F8VRH5 84 aa10.65□□□□□ -0.7
PDLIM2-208ENST00000416159 CXCL5P42830 114 aa10.65□□□□□ -0.7
PDLIM2-208ENST00000416159 LRP2P98164 4655 aa10.65□□□□□ -0.7
PDLIM2-208ENST00000416159 COX19Q49B96 90 aa10.65□□□□□ -0.7
PDLIM2-208ENST00000416159 LINC01546A6NGU7 62 aa10.64□□□□□ -0.71
PDLIM2-208ENST00000416159 IFITM2Q01629 132 aa10.64□□□□□ -0.71
PDLIM2-208ENST00000416159 LINC00469Q8N7U9 141 aa10.64□□□□□ -0.71
PDLIM2-208ENST00000416159 PRR26Q8N8Z3 221 aa10.64□□□□□ -0.71
PDLIM2-208ENST00000416159 TINCRA0A1B0GVN0 87 aa10.63□□□□□ -0.71
PDLIM2-208ENST00000416159 LBHQ53QV2 105 aaPredicted RBP10.63□□□□□ -0.71
PDLIM2-208ENST00000416159 IGLV1-50A0A075B6I6 118 aa10.62□□□□□ -0.71
PDLIM2-208ENST00000416159 PDZD11Q5EBL8 140 aa10.62□□□□□ -0.71
PDLIM2-208ENST00000416159 XAGE1AQ9HD64 81 aa10.62□□□□□ -0.71
PDLIM2-208ENST00000416159 C22orf24Q9Y442 160 aa10.62□□□□□ -0.71
PDLIM2-208ENST00000416159 SMIM1B2RUZ4 78 aa10.61□□□□□ -0.71
PDLIM2-208ENST00000416159 IGLV5-45A0A087WSX0 123 aa10.6□□□□□ -0.71
PDLIM2-208ENST00000416159 NUPR1O60356 82 aa10.6□□□□□ -0.71
PDLIM2-208ENST00000416159 FA2HQ7L5A8 372 aa10.6□□□□□ -0.71
PDLIM2-208ENST00000416159 COX7B2Q8TF08 81 aa10.6□□□□□ -0.71
PDLIM2-208ENST00000416159 CST9LQ9H4G1 147 aa10.6□□□□□ -0.71
PDLIM2-208ENST00000416159 KRTAP1-4P0C5Y4 121 aa10.59□□□□□ -0.71
PDLIM2-208ENST00000416159 FABP9Q0Z7S8 132 aa10.59□□□□□ -0.71
PDLIM2-208ENST00000416159 PMVKQ15126 192 aa10.59□□□□□ -0.71
PDLIM2-208ENST00000416159 SMCO4Q9NRQ5 59 aa10.59□□□□□ -0.71
PDLIM2-208ENST00000416159 TP73-AS1Q9UF72 201 aa10.59□□□□□ -0.71
PDLIM2-208ENST00000416159 ZNF861PO60384 105 aa10.58□□□□□ -0.72
PDLIM2-208ENST00000416159 COMMD7Q86VX2 200 aa10.58□□□□□ -0.72
PDLIM2-208ENST00000416159 MRPL18Q9H0U6 180 aaKnown RBP10.58□□□□□ -0.72
PDLIM2-208ENST00000416159 RHEBQ15382 184 aa10.56□□□□□ -0.72
PDLIM2-208ENST00000416159 C10orf91Q5T1B1 145 aa10.56□□□□□ -0.72
PDLIM2-208ENST00000416159 MRPL55Q7Z7F7 128 aaKnown RBP10.56□□□□□ -0.72
PDLIM2-208ENST00000416159 RPS10P5Q9NQ39 176 aa10.56□□□□□ -0.72
PDLIM2-208ENST00000416159 SPINK8P0C7L1 97 aa10.55□□□□□ -0.72
PDLIM2-208ENST00000416159 RPL13AP40429 203 aaKnown RBP10.55□□□□□ -0.72
PDLIM2-208ENST00000416159 CARHSP1Q9Y2V2 147 aaKnown RBP10.55□□□□□ -0.72
PDLIM2-208ENST00000416159 H3BRM9 83 aa10.54□□□□□ -0.72
PDLIM2-208ENST00000416159 RAB5BP61020 215 aa10.52□□□□□ -0.73
PDLIM2-208ENST00000416159 LINC00167Q96N53 147 aa10.52□□□□□ -0.73
PDLIM2-208ENST00000416159 RPL28P46779 137 aaKnown RBP10.51□□□□□ -0.73
PDLIM2-208ENST00000416159 BCE1O60756 84 aa10.5□□□□□ -0.73
PDLIM2-208ENST00000416159 ATP5LO75964 103 aa10.5□□□□□ -0.73
PDLIM2-208ENST00000416159 LINC00614P0C842 121 aa10.5□□□□□ -0.73
PDLIM2-208ENST00000416159 IGLC3P0DOY3 106 aa10.5□□□□□ -0.73
PDLIM2-208ENST00000416159 TRAPPC1Q9Y5R8 145 aa10.5□□□□□ -0.73
PDLIM2-208ENST00000416159 IGLV5-37A0A075B6J1 123 aa10.49□□□□□ -0.73
PDLIM2-208ENST00000416159 NDUFA6P56556 154 aa10.49□□□□□ -0.73
PDLIM2-208ENST00000416159 RPL37AP8A6NKH3 93 aa10.48□□□□□ -0.73
PDLIM2-208ENST00000416159 NKAPP1Q8N9T2 125 aa10.48□□□□□ -0.73
PDLIM2-208ENST00000416159 C18orf32Q8TCD1 76 aa10.48□□□□□ -0.73
PDLIM2-208ENST00000416159 A0A096LNJ9 63 aa10.47□□□□□ -0.73
PDLIM2-208ENST00000416159 IGLV5-39A0A0G2JS06 123 aa10.47□□□□□ -0.73
PDLIM2-208ENST00000416159 HBDP02042 147 aa10.47□□□□□ -0.73
PDLIM2-208ENST00000416159 URB1-AS1Q96HZ7 61 aa10.47□□□□□ -0.73
PDLIM2-208ENST00000416159 GAGE10A6NGK3 116 aa10.46□□□□□ -0.73
PDLIM2-208ENST00000416159 ZNF22P17026 224 aaPredicted RBP10.46□□□□□ -0.73
PDLIM2-208ENST00000416159 PFN2P35080 140 aa10.44□□□□□ -0.74
PDLIM2-208ENST00000416159 BAGE3Q86Y29 109 aa10.43□□□□□ -0.74
PDLIM2-208ENST00000416159 RNF213Q63HN8 5207 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 SNAPINO95295 136 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 APOC3P02656 99 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 CRYGAP11844 174 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 UBE2AP49459 152 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 COX17Q14061 63 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 PMCHL1Q16048 86 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 ERG28Q9UKR5 140 aa10.42□□□□□ -0.74
PDLIM2-208ENST00000416159 NDUFA5Q16718 116 aa10.41□□□□□ -0.74
PDLIM2-208ENST00000416159 C11orf86A6NJI1 115 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 PRR4Q16378 134 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 TMEM170BQ5T4T1 132 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 SFTA2Q6UW10 78 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 SND1-IT1Q9HBX3 110 aa10.4□□□□□ -0.74
PDLIM2-208ENST00000416159 A0A087X002 238 aa10.39□□□□□ -0.75
PDLIM2-208ENST00000416159 VPREB1P12018 145 aa10.39□□□□□ -0.75
PDLIM2-208ENST00000416159 RPL24P83731 157 aaKnown RBP10.39□□□□□ -0.75
PDLIM2-208ENST00000416159 SVBPQ8N300 66 aa10.39□□□□□ -0.75
PDLIM2-208ENST00000416159 TYMSOSQ8TAI1 123 aa10.39□□□□□ -0.75
PDLIM2-208ENST00000416159 IGKV2-28A0A075B6P5 120 aa10.38□□□□□ -0.75
PDLIM2-208ENST00000416159 SCO1O75880 301 aa10.38□□□□□ -0.75
PDLIM2-208ENST00000416159 IGKV2D-28P01615 120 aa10.38□□□□□ -0.75
PDLIM2-208ENST00000416159 ZNF625Q96I27 306 aaPredicted RBP10.38□□□□□ -0.75
PDLIM2-208ENST00000416159 LPAP08519 4548 aa10.38□□□□□ -0.75
PDLIM2-208ENST00000416159 CHTOPQ9Y3Y2 248 aaKnown RBP10.37□□□□□ -0.75
PDLIM2-208ENST00000416159 TSPAN13O95857 204 aa10.36□□□□□ -0.75
PDLIM2-208ENST00000416159 CHCHD1Q96BP2 118 aaKnown RBP10.35□□□□□ -0.75
PDLIM2-208ENST00000416159 FAM229BQ4G0N7 80 aa10.34□□□□□ -0.75
PDLIM2-208ENST00000416159 ANAPC11Q9NYG5 84 aa10.34□□□□□ -0.75
PDLIM2-208ENST00000416159 TRAV12-1A0A0B4J245 112 aa10.33□□□□□ -0.76
PDLIM2-208ENST00000416159 FAM19A1Q7Z5A9 133 aa10.33□□□□□ -0.76
PDLIM2-208ENST00000416159 TMEM126AQ9H061 195 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms