RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.07□□□□□ -0.32
USP48-204ENST00000400301 CITED1Q99966 193 aa13.07□□□□□ -0.32
USP48-204ENST00000400301 LELP1Q5T871 98 aa13.07□□□□□ -0.32
USP48-204ENST00000400301 A8MTW9 85 aa13.07□□□□□ -0.32
USP48-204ENST00000400301 F8WEM9 126 aa13.06□□□□□ -0.32
USP48-204ENST00000400301 FLNBO75369 2602 aaKnown RBP13.06□□□□□ -0.32
USP48-204ENST00000400301 M0QXV9 152 aa13.05□□□□□ -0.32
USP48-204ENST00000400301 FAM240AA0A1B0GVK7 77 aa13.04□□□□□ -0.32
USP48-204ENST00000400301 C9orf116Q5BN46 136 aaPredicted RBP13.04□□□□□ -0.32
USP48-204ENST00000400301 IGHV4-30-4P0DP06 118 aa13.04□□□□□ -0.32
USP48-204ENST00000400301 IGHV3OR16-9A0A0B4J2B5 98 aa13.04□□□□□ -0.32
USP48-204ENST00000400301 PRR3P79522 188 aaKnown RBP13.04□□□□□ -0.32
USP48-204ENST00000400301 COX7BP24311 80 aa13.03□□□□□ -0.32
USP48-204ENST00000400301 SMIM20Q8N5G0 67 aa13.03□□□□□ -0.32
USP48-204ENST00000400301 LINC00337Q8N6G1 96 aa13.03□□□□□ -0.32
USP48-204ENST00000400301 C11orf45Q8TAV5 145 aa13.03□□□□□ -0.32
USP48-204ENST00000400301 LITAFQ99732 161 aa13.03□□□□□ -0.32
USP48-204ENST00000400301 SOSTDC1Q6X4U4 206 aa13.02□□□□□ -0.32
USP48-204ENST00000400301 ZZEF1O43149 2961 aa13.02□□□□□ -0.32
USP48-204ENST00000400301 FLNCQ14315 2725 aa13.02□□□□□ -0.32
USP48-204ENST00000400301 UNQ6190/PRO20217Q6UXQ8 127 aa13.02□□□□□ -0.33
USP48-204ENST00000400301 A0A087WYN8 130 aa13.01□□□□□ -0.33
USP48-204ENST00000400301 A0A1B0GUV1 79 aa13.01□□□□□ -0.33
USP48-204ENST00000400301 KPRPQ5T749 579 aaPredicted RBP13.01□□□□□ -0.33
USP48-204ENST00000400301 IGSF10Q6WRI0 2623 aa13.01□□□□□ -0.33
USP48-204ENST00000400301 DEFB131BA0A096LNP1 70 aa13.01□□□□□ -0.33
USP48-204ENST00000400301 OXLD1Q5BKU9 147 aa13.01□□□□□ -0.33
USP48-204ENST00000400301 ETDCA0A1B0GVM5 59 aa13□□□□□ -0.33
USP48-204ENST00000400301 SBSPONQ8IVN8 264 aa13□□□□□ -0.33
USP48-204ENST00000400301 WDFY3Q8IZQ1 3526 aa13□□□□□ -0.33
USP48-204ENST00000400301 CYSRT1A8MQ03 144 aa13□□□□□ -0.33
USP48-204ENST00000400301 COX17Q14061 63 aa12.99□□□□□ -0.33
USP48-204ENST00000400301 COL12A1Q99715 3063 aa12.99□□□□□ -0.33
USP48-204ENST00000400301 MUC3AQ02505 3323 aa12.98□□□□□ -0.33
USP48-204ENST00000400301 H3BQ85 93 aa12.98□□□□□ -0.33
USP48-204ENST00000400301 IMUPQ9GZP8 106 aa12.98□□□□□ -0.33
USP48-204ENST00000400301 Q6Q795 121 aa12.97□□□□□ -0.33
USP48-204ENST00000400301 CCDC179H3BU77 68 aa12.97□□□□□ -0.33
USP48-204ENST00000400301 UBE2BP63146 152 aa12.96□□□□□ -0.33
USP48-204ENST00000400301 Q6ZQY7 126 aa12.96□□□□□ -0.33
USP48-204ENST00000400301 USP24Q9UPU5 2620 aa12.96□□□□□ -0.33
USP48-204ENST00000400301 TRAV23DV6A0A075B6W5 121 aa12.95□□□□□ -0.34
USP48-204ENST00000400301 EIF4EBP3O60516 100 aaPredicted RBP12.94□□□□□ -0.34
USP48-204ENST00000400301 PDE6GP18545 87 aa12.94□□□□□ -0.34
USP48-204ENST00000400301 F8P00451 2351 aa12.94□□□□□ -0.34
USP48-204ENST00000400301 SHISA2Q6UWI4 295 aa12.93□□□□□ -0.34
USP48-204ENST00000400301 UQCRQO14949 82 aa12.93□□□□□ -0.34
USP48-204ENST00000400301 RETNQ9HD89 108 aa12.93□□□□□ -0.34
USP48-204ENST00000400301 C6orf223Q8N319 242 aa12.92□□□□□ -0.34
USP48-204ENST00000400301 FUSP35637 526 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP48-204ENST00000400301 NREPQ16612 68 aa12.91□□□□□ -0.34
USP48-204ENST00000400301 SYCNQ0VAF6 134 aa12.9□□□□□ -0.34
USP48-204ENST00000400301 X6R8D5 127 aa12.9□□□□□ -0.34
USP48-204ENST00000400301 ENHOQ6UWT2 76 aa12.9□□□□□ -0.34
USP48-204ENST00000400301 Q8N814 137 aa12.9□□□□□ -0.34
USP48-204ENST00000400301 UPK3BQ9BT76 320 aa12.9□□□□□ -0.34
USP48-204ENST00000400301 ATRQ13535 2644 aa12.89□□□□□ -0.35
USP48-204ENST00000400301 FAM218AQ96MZ4 157 aa12.89□□□□□ -0.35
USP48-204ENST00000400301 CELA1Q9UNI1 258 aa12.88□□□□□ -0.35
USP48-204ENST00000400301 DMDP11532 3685 aa12.88□□□□□ -0.35
USP48-204ENST00000400301 C3orf22Q8N5N4 141 aa12.87□□□□□ -0.35
USP48-204ENST00000400301 GIG44P09565 113 aaPredicted RBP12.87□□□□□ -0.35
USP48-204ENST00000400301 MUC7Q8TAX7 377 aa12.87□□□□□ -0.35
USP48-204ENST00000400301 HELZ2Q9BYK8 2649 aaKnown RBP12.86□□□□□ -0.35
USP48-204ENST00000400301 NANOS2P60321 138 aaKnown RBP12.86□□□□□ -0.35
USP48-204ENST00000400301 Q6ZTC4 211 aa12.86□□□□□ -0.35
USP48-204ENST00000400301 ATP5EP2Q5VTU8 51 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 LINC01561Q8N1V8 128 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 ZNF73O43830 326 aaPredicted RBP12.85□□□□□ -0.35
USP48-204ENST00000400301 NDUFC2O95298 119 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 CSNK1G2-AS1Q8NCQ2 148 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 TRBV10-3A0A0K0K1G6 114 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 CHD6Q8TD26 2715 aa12.85□□□□□ -0.35
USP48-204ENST00000400301 USP17L23D6RBM5 183 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 IL17DQ8TAD2 202 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 TEX15Q9BXT5 2789 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 KRTAP1-3Q8IUG1 177 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 A0A0J9YWU9 116 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 SCXQ7RTU7 201 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 M0R378 163 aa12.84□□□□□ -0.35
USP48-204ENST00000400301 IGKV2-28A0A075B6P5 120 aa12.83□□□□□ -0.36
USP48-204ENST00000400301 IGKV2D-28P01615 120 aa12.83□□□□□ -0.36
USP48-204ENST00000400301 CCKP06307 115 aa12.83□□□□□ -0.36
USP48-204ENST00000400301 KLK5Q9Y337 293 aaPredicted RBP12.83□□□□□ -0.36
USP48-204ENST00000400301 Q6JHZ5 121 aa12.82□□□□□ -0.36
USP48-204ENST00000400301 Q8N3U1 123 aa12.82□□□□□ -0.36
USP48-204ENST00000400301 LYPD5Q6UWN5 251 aa12.82□□□□□ -0.36
USP48-204ENST00000400301 C19orf73Q9NVV2 129 aa12.82□□□□□ -0.36
USP48-204ENST00000400301 WFDC10BQ8IUB3 73 aa12.81□□□□□ -0.36
USP48-204ENST00000400301 PLAC8L1A1L4L8 177 aa12.81□□□□□ -0.36
USP48-204ENST00000400301 PRB2P02812 416 aaPredicted RBP12.81□□□□□ -0.36
USP48-204ENST00000400301 IGKV2-24A0A0C4DH68 120 aa12.81□□□□□ -0.36
USP48-204ENST00000400301 WFDC9Q8NEX5 89 aa12.81□□□□□ -0.36
USP48-204ENST00000400301 C20orf197Q8N268 126 aa12.8□□□□□ -0.36
USP48-204ENST00000400301 A0A087WVE0 104 aa12.8□□□□□ -0.36
USP48-204ENST00000400301 EGFEM1PQ0D2K5 195 aa12.79□□□□□ -0.36
USP48-204ENST00000400301 FAM19A3Q7Z5A8 133 aa12.79□□□□□ -0.36
USP48-204ENST00000400301 LINC00846Q9NV44 126 aa12.79□□□□□ -0.36
USP48-204ENST00000400301 TRAV10A0A0B4J240 114 aa12.78□□□□□ -0.36
USP48-204ENST00000400301 COX7CP15954 63 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms