RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LINC00959A0A1B0GUT2 108 aa8.85□□□□□ -0.99
SHMT1-205ENST00000395684 DNAL4O96015 105 aa8.85□□□□□ -0.99
SHMT1-205ENST00000395684 C3orf56Q8N813 242 aa8.85□□□□□ -0.99
SHMT1-205ENST00000395684 PAX4O43316 350 aa8.84□□□□□ -0.99
SHMT1-205ENST00000395684 DEFB130BP0DP73 79 aa8.84□□□□□ -0.99
SHMT1-205ENST00000395684 DEFB130AP0DP74 79 aa8.84□□□□□ -0.99
SHMT1-205ENST00000395684 C11orf68Q9H3H3 251 aaKnown RBP8.84□□□□□ -0.99
SHMT1-205ENST00000395684 H0YGX0 51 aa8.83□□□□□ -1
SHMT1-205ENST00000395684 C6orf226Q5I0X4 101 aa8.83□□□□□ -1
SHMT1-205ENST00000395684 C14orf132Q9NPU4 83 aa8.83□□□□□ -1
SHMT1-205ENST00000395684 LECT2O14960 151 aa8.82□□□□□ -1
SHMT1-205ENST00000395684 MTORP42345 2549 aa8.82□□□□□ -1
SHMT1-205ENST00000395684 XCL1P47992 114 aa8.82□□□□□ -1
SHMT1-205ENST00000395684 OR13C6PQ8NH95 151 aa8.82□□□□□ -1
SHMT1-205ENST00000395684 FN1P02751 2386 aaKnown RBP8.82□□□□□ -1
SHMT1-205ENST00000395684 PDZD2O15018 2839 aa8.81□□□□□ -1
SHMT1-205ENST00000395684 OBSCN-AS1Q96MR7 158 aa8.81□□□□□ -1
SHMT1-205ENST00000395684 SLPIP03973 132 aa8.81□□□□□ -1
SHMT1-205ENST00000395684 C16orf95Q9H693 158 aa8.81□□□□□ -1
SHMT1-205ENST00000395684 CXCL5P42830 114 aa8.8□□□□□ -1
SHMT1-205ENST00000395684 GYPEP15421 78 aa8.8□□□□□ -1
SHMT1-205ENST00000395684 SMIM20Q8N5G0 67 aa8.8□□□□□ -1
SHMT1-205ENST00000395684 J3QKU1 62 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 RNASE1P07998 156 aaKnown RBP8.79□□□□□ -1
SHMT1-205ENST00000395684 CLPSL2Q6UWE3 100 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 NCR3O14931 201 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 LY6G6DO95868 133 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 KRTAP1-1Q07627 177 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 BAHCC1Q9P281 2608 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 NBEAL2Q6ZNJ1 2754 aa8.79□□□□□ -1
SHMT1-205ENST00000395684 ANK3Q12955 4377 aaKnown RBP8.79□□□□□ -1
SHMT1-205ENST00000395684 KIR2DL5BQ8NHK3 375 aa8.78□□□□□ -1
SHMT1-205ENST00000395684 KLK5Q9Y337 293 aaPredicted RBP8.78□□□□□ -1
SHMT1-205ENST00000395684 A0A096LPF7 62 aa8.78□□□□□ -1
SHMT1-205ENST00000395684 PRR3P79522 188 aaKnown RBP8.78□□□□□ -1
SHMT1-205ENST00000395684 LINC00612Q8N6U2 182 aa8.78□□□□□ -1
SHMT1-205ENST00000395684 A0A1B0GUV1 79 aa8.77□□□□□ -1
SHMT1-205ENST00000395684 SS18Q15532 418 aa8.77□□□□□ -1
SHMT1-205ENST00000395684 LINC00846Q9NV44 126 aa8.77□□□□□ -1
SHMT1-205ENST00000395684 Q8IZM0 81 aa8.77□□□□□ -1.01
SHMT1-205ENST00000395684 C3orf22Q8N5N4 141 aa8.77□□□□□ -1.01
SHMT1-205ENST00000395684 NANOS2P60321 138 aaKnown RBP8.76□□□□□ -1.01
SHMT1-205ENST00000395684 UQCRQO14949 82 aa8.75□□□□□ -1.01
SHMT1-205ENST00000395684 HIST1H4AP62805 103 aaKnown RBP8.75□□□□□ -1.01
SHMT1-205ENST00000395684 TMEM126AQ9H061 195 aa8.75□□□□□ -1.01
SHMT1-205ENST00000395684 OTOGQ6ZRI0 2925 aa8.75□□□□□ -1.01
SHMT1-205ENST00000395684 C9orf153Q5TBE3 101 aa8.75□□□□□ -1.01
SHMT1-205ENST00000395684 X6R8D5 127 aa8.75□□□□□ -1.01
SHMT1-205ENST00000395684 IGKV3D-7A0A0C4DH55 119 aa8.74□□□□□ -1.01
SHMT1-205ENST00000395684 ORMDL1Q9P0S3 153 aa8.74□□□□□ -1.01
SHMT1-205ENST00000395684 KIAA0087Q14695 138 aa8.74□□□□□ -1.01
SHMT1-205ENST00000395684 LINC00526Q96FQ7 95 aa8.74□□□□□ -1.01
SHMT1-205ENST00000395684 PRO0255Q9UI72 69 aa8.74□□□□□ -1.01
SHMT1-205ENST00000395684 LINC00269Q8N2A0 174 aa8.73□□□□□ -1.01
SHMT1-205ENST00000395684 C2orf48Q96LS8 159 aa8.73□□□□□ -1.01
SHMT1-205ENST00000395684 LINC01561Q8N1V8 128 aa8.73□□□□□ -1.01
SHMT1-205ENST00000395684 Q8N3U1 123 aa8.73□□□□□ -1.01
SHMT1-205ENST00000395684 COX7CP15954 63 aa8.72□□□□□ -1.01
SHMT1-205ENST00000395684 KRTAP10-3P60369 221 aa8.72□□□□□ -1.01
SHMT1-205ENST00000395684 LINC00167Q96N53 147 aa8.72□□□□□ -1.01
SHMT1-205ENST00000395684 IGLV10-54A0A075B6I4 117 aa8.71□□□□□ -1.01
SHMT1-205ENST00000395684 C9orf116Q5BN46 136 aaPredicted RBP8.71□□□□□ -1.01
SHMT1-205ENST00000395684 Q6JHZ5 121 aa8.71□□□□□ -1.01
SHMT1-205ENST00000395684 TEP1Q99973 2627 aaKnown RBP8.71□□□□□ -1.01
SHMT1-205ENST00000395684 Q8N814 137 aa8.71□□□□□ -1.02
SHMT1-205ENST00000395684 A0A087WVE0 104 aa8.7□□□□□ -1.02
SHMT1-205ENST00000395684 CD164L2Q6UWJ8 174 aa8.7□□□□□ -1.02
SHMT1-205ENST00000395684 Q8NDZ9 215 aa8.7□□□□□ -1.02
SHMT1-205ENST00000395684 CHCHD10Q8WYQ3 142 aaPredicted RBP8.7□□□□□ -1.02
SHMT1-205ENST00000395684 ATOX1O00244 68 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 NDUFC2O95298 119 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 CCKP06307 115 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 HILS1P60008 231 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 DEFB4AO15263 64 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 VWFP04275 2813 aa8.69□□□□□ -1.02
SHMT1-205ENST00000395684 RPL18AQ02543 176 aaKnown RBP8.68□□□□□ -1.02
SHMT1-205ENST00000395684 COX17Q14061 63 aa8.68□□□□□ -1.02
SHMT1-205ENST00000395684 LINC00482Q8N8I6 264 aa8.68□□□□□ -1.02
SHMT1-205ENST00000395684 IGHV4-28A0A0C4DH34 117 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 A0A1B0GX51 115 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 SMIM9A6NGZ8 99 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 ANGP03950 147 aaKnown RBP8.67□□□□□ -1.02
SHMT1-205ENST00000395684 REG3AQ06141 175 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 SPATA3Q8NHX4 192 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 CRYGAP11844 174 aa8.67□□□□□ -1.02
SHMT1-205ENST00000395684 JMJD7-PLA2G4BH0Y9G9 81 aa8.66□□□□□ -1.02
SHMT1-205ENST00000395684 TMEM256-PLSCR3K7ERE1 68 aa8.66□□□□□ -1.02
SHMT1-205ENST00000395684 C6orf99Q4VX62 202 aa8.66□□□□□ -1.02
SHMT1-205ENST00000395684 CYSTM1Q9H1C7 97 aa8.66□□□□□ -1.02
SHMT1-205ENST00000395684 HIVEP1P15822 2718 aa8.66□□□□□ -1.02
SHMT1-205ENST00000395684 LYRM9A8MSI8 78 aa8.65□□□□□ -1.02
SHMT1-205ENST00000395684 DEFB135Q30KP9 77 aa8.65□□□□□ -1.03
SHMT1-205ENST00000395684 C10orf25Q5T742 122 aa8.65□□□□□ -1.03
SHMT1-205ENST00000395684 hADV29S1A0JD25 119 aa8.64□□□□□ -1.03
SHMT1-205ENST00000395684 C6orf223Q8N319 242 aa8.64□□□□□ -1.03
SHMT1-205ENST00000395684 MAST4O15021 2626 aa8.64□□□□□ -1.03
SHMT1-205ENST00000395684 SMR3AQ99954 134 aa8.64□□□□□ -1.03
SHMT1-205ENST00000395684 USP17L23D6RBM5 183 aa8.63□□□□□ -1.03
SHMT1-205ENST00000395684 UNQ6190/PRO20217Q6UXQ8 127 aa8.63□□□□□ -1.03
SHMT1-205ENST00000395684 S100A7L2Q5SY68 101 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms