RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 C2orf82Q6UX34 121 aa10.31□□□□□ -0.76
GPC3-202ENST00000394299 PFN2P35080 140 aa10.31□□□□□ -0.76
GPC3-202ENST00000394299 RPL13AP40429 203 aaKnown RBP10.31□□□□□ -0.76
GPC3-202ENST00000394299 REG3AQ06141 175 aa10.31□□□□□ -0.76
GPC3-202ENST00000394299 MIR7-3HGQ8N6C7 128 aa10.31□□□□□ -0.76
GPC3-202ENST00000394299 LINC00158P58513 81 aa10.3□□□□□ -0.76
GPC3-202ENST00000394299 C6orf226Q5I0X4 101 aa10.3□□□□□ -0.76
GPC3-202ENST00000394299 CHCHD10Q8WYQ3 142 aaPredicted RBP10.3□□□□□ -0.76
GPC3-202ENST00000394299 A0A0J9YWU9 116 aa10.29□□□□□ -0.76
GPC3-202ENST00000394299 LYPD5Q6UWN5 251 aa10.29□□□□□ -0.76
GPC3-202ENST00000394299 LELP1Q5T871 98 aa10.29□□□□□ -0.76
GPC3-202ENST00000394299 SPATA25Q9BR10 227 aa10.29□□□□□ -0.76
GPC3-202ENST00000394299 TRBV20-1A0A075B6N2 111 aa10.28□□□□□ -0.76
GPC3-202ENST00000394299 NANOS2P60321 138 aaKnown RBP10.28□□□□□ -0.76
GPC3-202ENST00000394299 LYRM7Q5U5X0 104 aa10.28□□□□□ -0.76
GPC3-202ENST00000394299 TRBV30A0A0K0K1B3 111 aa10.28□□□□□ -0.76
GPC3-202ENST00000394299 KLK12Q9UKR0 248 aa10.28□□□□□ -0.76
GPC3-202ENST00000394299 CKS1BP61024 79 aa10.27□□□□□ -0.77
GPC3-202ENST00000394299 KPRPQ5T749 579 aaPredicted RBP10.27□□□□□ -0.77
GPC3-202ENST00000394299 CLEC2BQ92478 149 aa10.27□□□□□ -0.77
GPC3-202ENST00000394299 C9JAW5 83 aa10.26□□□□□ -0.77
GPC3-202ENST00000394299 CD164L2Q6UWJ8 174 aa10.26□□□□□ -0.77
GPC3-202ENST00000394299 LINC00526Q96FQ7 95 aa10.25□□□□□ -0.77
GPC3-202ENST00000394299 COX7A2LO14548 114 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 WFDC10BQ8IUB3 73 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 MRAPQ8TCY5 172 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 MGAM2Q2M2H8 2515 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 CCL18P55774 89 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 KIAA0087Q14695 138 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 ENHOQ6UWT2 76 aa10.24□□□□□ -0.77
GPC3-202ENST00000394299 J3QR89 54 aa10.23□□□□□ -0.77
GPC3-202ENST00000394299 FOXI1Q12951 378 aa10.23□□□□□ -0.77
GPC3-202ENST00000394299 HUWE1Q7Z6Z7 4374 aaKnown RBP10.23□□□□□ -0.77
GPC3-202ENST00000394299 C9orf116Q5BN46 136 aaPredicted RBP10.23□□□□□ -0.77
GPC3-202ENST00000394299 Q8IZM0 81 aa10.23□□□□□ -0.77
GPC3-202ENST00000394299 IGKV2-28A0A075B6P5 120 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 IBA57-AS1B1ANH7 110 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 IGKV2D-28P01615 120 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 MALP21145 153 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 SND1-IT1Q9HBX3 110 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 SLC25A20O43772 301 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 ATXN8Q156A1 80 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 LINC01620Q4KN68 170 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 C6orf223Q8N319 242 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 LINC00337Q8N6G1 96 aa10.22□□□□□ -0.77
GPC3-202ENST00000394299 ESRGQ1W209 222 aa10.21□□□□□ -0.77
GPC3-202ENST00000394299 C11orf45Q8TAV5 145 aa10.21□□□□□ -0.77
GPC3-202ENST00000394299 CARD19Q96LW7 228 aa10.21□□□□□ -0.77
GPC3-202ENST00000394299 DEFB121Q5J5C9 76 aa10.21□□□□□ -0.78
GPC3-202ENST00000394299 DEFB131BA0A096LNP1 70 aa10.2□□□□□ -0.78
GPC3-202ENST00000394299 UBE2WQ96B02 151 aa10.2□□□□□ -0.78
GPC3-202ENST00000394299 COX6CP09669 75 aa10.19□□□□□ -0.78
GPC3-202ENST00000394299 ANKRD29Q8N6D5 301 aa10.19□□□□□ -0.78
GPC3-202ENST00000394299 COPS9Q8WXC6 57 aa10.19□□□□□ -0.78
GPC3-202ENST00000394299 PRR34Q9NV39 138 aa10.19□□□□□ -0.78
GPC3-202ENST00000394299 C10orf25Q5T742 122 aa10.19□□□□□ -0.78
GPC3-202ENST00000394299 K7EIL1 84 aa10.18□□□□□ -0.78
GPC3-202ENST00000394299 CFAP161Q6P656 301 aa10.18□□□□□ -0.78
GPC3-202ENST00000394299 PRR3P79522 188 aaKnown RBP10.17□□□□□ -0.78
GPC3-202ENST00000394299 UNQ6190/PRO20217Q6UXQ8 127 aa10.17□□□□□ -0.78
GPC3-202ENST00000394299 TEN1Q86WV5 123 aa10.17□□□□□ -0.78
GPC3-202ENST00000394299 LINC01561Q8N1V8 128 aa10.17□□□□□ -0.78
GPC3-202ENST00000394299 CDIP1Q9H305 208 aa10.17□□□□□ -0.78
GPC3-202ENST00000394299 H3BNG1 76 aa10.16□□□□□ -0.78
GPC3-202ENST00000394299 LST1O00453 97 aa10.16□□□□□ -0.78
GPC3-202ENST00000394299 CRPP02741 224 aa10.15□□□□□ -0.79
GPC3-202ENST00000394299 FAM218AQ96MZ4 157 aa10.15□□□□□ -0.79
GPC3-202ENST00000394299 TRBV10-2A0A0K0K1G8 114 aa10.14□□□□□ -0.79
GPC3-202ENST00000394299 SPAG11BQ08648 103 aa10.14□□□□□ -0.79
GPC3-202ENST00000394299 NTN5Q8WTR8 489 aaPredicted RBP10.14□□□□□ -0.79
GPC3-202ENST00000394299 MDFIQ99750 246 aa10.14□□□□□ -0.79
GPC3-202ENST00000394299 MT-ATP8P03928 68 aa10.14□□□□□ -0.79
GPC3-202ENST00000394299 TRAV13-2A0A0B4J235 113 aa10.13□□□□□ -0.79
GPC3-202ENST00000394299 Q8NDZ9 215 aa10.12□□□□□ -0.79
GPC3-202ENST00000394299 OR13C6PQ8NH95 151 aa10.12□□□□□ -0.79
GPC3-202ENST00000394299 SMIM11BQ8TCY0 68 aa10.12□□□□□ -0.79
GPC3-202ENST00000394299 PPDPFQ9H3Y8 114 aa10.12□□□□□ -0.79
GPC3-202ENST00000394299 KLK5Q9Y337 293 aaPredicted RBP10.12□□□□□ -0.79
GPC3-202ENST00000394299 PPDPFLQ8WWR9 84 aa10.12□□□□□ -0.79
GPC3-202ENST00000394299 TEX49A0A1B0GTD5 131 aa10.11□□□□□ -0.79
GPC3-202ENST00000394299 TM2D3Q9BRN9 247 aa10.11□□□□□ -0.79
GPC3-202ENST00000394299 XGP55808 180 aa10.1□□□□□ -0.79
GPC3-202ENST00000394299 HIGD2BQ4VC39 106 aa10.1□□□□□ -0.79
GPC3-202ENST00000394299 TRAV8-4A0A0B4J246 113 aa10.1□□□□□ -0.79
GPC3-202ENST00000394299 COL7A1Q02388 2944 aa10.1□□□□□ -0.79
GPC3-202ENST00000394299 CXCL5P42830 114 aa10.09□□□□□ -0.79
GPC3-202ENST00000394299 RPL28P46779 137 aaKnown RBP10.09□□□□□ -0.79
GPC3-202ENST00000394299 KRTAP26-1Q6PEX3 210 aa10.09□□□□□ -0.79
GPC3-202ENST00000394299 Q9HAA7 133 aa10.08□□□□□ -0.8
GPC3-202ENST00000394299 COX17Q14061 63 aa10.07□□□□□ -0.8
GPC3-202ENST00000394299 LYSTQ99698 3801 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 A0A087WYN8 130 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 M0QXV9 152 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 C6orf48Q9UBA6 75 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 DNAH9Q9NYC9 4486 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 NCR3O14931 201 aa10.06□□□□□ -0.8
GPC3-202ENST00000394299 TRAV10A0A0B4J240 114 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 LINC01600Q96MT4 127 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 IGKV2D-24A0A075B6R9 120 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 H3BT86 120 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 289.8 ms