RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 IBA57-AS1B1ANH7 110 aa17.14■□□□□ 0.33
SHOX2-201ENST00000389589 TRAV10A0A0B4J240 114 aa17.13■□□□□ 0.33
SHOX2-201ENST00000389589 MALP21145 153 aa17.13■□□□□ 0.33
SHOX2-201ENST00000389589 FOXI1Q12951 378 aa17.13■□□□□ 0.33
SHOX2-201ENST00000389589 ESRGQ1W209 222 aa17.12■□□□□ 0.33
SHOX2-201ENST00000389589 Q1RN00 199 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 WFDC10BQ8IUB3 73 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 H3BMG7 143 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 CRPP02741 224 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 ENHOQ6UWT2 76 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 SOSTDC1Q6X4U4 206 aa17.11■□□□□ 0.33
SHOX2-201ENST00000389589 TRBV20-1A0A075B6N2 111 aa17.1■□□□□ 0.33
SHOX2-201ENST00000389589 TRAV8-4A0A0B4J246 113 aa17.1■□□□□ 0.33
SHOX2-201ENST00000389589 H7C2G1 150 aa17.1■□□□□ 0.33
SHOX2-201ENST00000389589 CXCL5P42830 114 aa17.1■□□□□ 0.33
SHOX2-201ENST00000389589 PSMB2P49721 201 aa17.1■□□□□ 0.33
SHOX2-201ENST00000389589 LINC00158P58513 81 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 MGAM2Q2M2H8 2515 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 GAGE12HA6NDE8 117 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 SCGB1C2P0DMR2 95 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 CFAP161Q6P656 301 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 MIR7-3HGQ8N6C7 128 aa17.09■□□□□ 0.33
SHOX2-201ENST00000389589 F8W1H4 67 aa17.08■□□□□ 0.33
SHOX2-201ENST00000389589 CKS1BP61024 79 aa17.08■□□□□ 0.33
SHOX2-201ENST00000389589 KIAA0087Q14695 138 aa17.08■□□□□ 0.32
SHOX2-201ENST00000389589 C15orf53Q8NAA6 179 aa17.08■□□□□ 0.32
SHOX2-201ENST00000389589 TRBV30A0A0K0K1B3 111 aa17.06■□□□□ 0.32
SHOX2-201ENST00000389589 KLK5Q9Y337 293 aaPredicted RBP17.06■□□□□ 0.32
SHOX2-201ENST00000389589 UBE2WQ96B02 151 aa17.06■□□□□ 0.32
SHOX2-201ENST00000389589 RPL13AP40429 203 aaKnown RBP17.04■□□□□ 0.32
SHOX2-201ENST00000389589 TCL1BO95988 128 aa17.03■□□□□ 0.32
SHOX2-201ENST00000389589 PFN2P35080 140 aa17.03■□□□□ 0.32
SHOX2-201ENST00000389589 C2orf82Q6UX34 121 aa17.03■□□□□ 0.32
SHOX2-201ENST00000389589 LINC01556Q5JQF7 62 aa17.02■□□□□ 0.32
SHOX2-201ENST00000389589 HUWE1Q7Z6Z7 4374 aaKnown RBP17.02■□□□□ 0.31
SHOX2-201ENST00000389589 TRIAP1O43715 76 aa17■□□□□ 0.31
SHOX2-201ENST00000389589 COX6CP09669 75 aa17■□□□□ 0.31
SHOX2-201ENST00000389589 COX17Q14061 63 aa17■□□□□ 0.31
SHOX2-201ENST00000389589 PRO0461Q9UI25 63 aa17■□□□□ 0.31
SHOX2-201ENST00000389589 SND1-IT1Q9HBX3 110 aa16.99■□□□□ 0.31
SHOX2-201ENST00000389589 CCL18P55774 89 aa16.98■□□□□ 0.31
SHOX2-201ENST00000389589 SPAG11BQ08648 103 aa16.98■□□□□ 0.31
SHOX2-201ENST00000389589 OCIAD2Q56VL3 154 aa16.97■□□□□ 0.31
SHOX2-201ENST00000389589 TRAV13-2A0A0B4J235 113 aa16.96■□□□□ 0.31
SHOX2-201ENST00000389589 WFDC2Q14508 124 aa16.95■□□□□ 0.3
SHOX2-201ENST00000389589 DNAH10OSP0CZ25 163 aa16.94■□□□□ 0.3
SHOX2-201ENST00000389589 ATXN8Q156A1 80 aa16.94■□□□□ 0.3
SHOX2-201ENST00000389589 B9D2Q9BPU9 175 aa16.92■□□□□ 0.3
SHOX2-201ENST00000389589 K7ERU9 68 aa16.92■□□□□ 0.3
SHOX2-201ENST00000389589 KRTAP26-1Q6PEX3 210 aa16.92■□□□□ 0.3
SHOX2-201ENST00000389589 MTURNQ8N3F0 131 aa16.91■□□□□ 0.3
SHOX2-201ENST00000389589 MUC7Q8TAX7 377 aa16.9■□□□□ 0.3
SHOX2-201ENST00000389589 C1orf43Q9BWL3 253 aa16.9■□□□□ 0.3
SHOX2-201ENST00000389589 LINC00588Q9Y4M8 146 aa16.9■□□□□ 0.3
SHOX2-201ENST00000389589 IGKV2-28A0A075B6P5 120 aa16.89■□□□□ 0.29
SHOX2-201ENST00000389589 IGKV2D-28P01615 120 aa16.89■□□□□ 0.29
SHOX2-201ENST00000389589 C6orf223Q8N319 242 aa16.89■□□□□ 0.29
SHOX2-201ENST00000389589 UNQ6190/PRO20217Q6UXQ8 127 aa16.88■□□□□ 0.29
SHOX2-201ENST00000389589 LINC00337Q8N6G1 96 aa16.87■□□□□ 0.29
SHOX2-201ENST00000389589 NTN5Q8WTR8 489 aaPredicted RBP16.87■□□□□ 0.29
SHOX2-201ENST00000389589 GVQW2A0A096LPI5 108 aaPredicted RBP16.86■□□□□ 0.29
SHOX2-201ENST00000389589 SMCPP49901 116 aaPredicted RBP16.86■□□□□ 0.29
SHOX2-201ENST00000389589 ETDBQ3ZM63 59 aa16.85■□□□□ 0.29
SHOX2-201ENST00000389589 C9orf116Q5BN46 136 aaPredicted RBP16.85■□□□□ 0.29
SHOX2-201ENST00000389589 C10orf25Q5T742 122 aa16.85■□□□□ 0.29
SHOX2-201ENST00000389589 LINC01620Q4KN68 170 aa16.84■□□□□ 0.29
SHOX2-201ENST00000389589 LINC00526Q96FQ7 95 aa16.84■□□□□ 0.29
SHOX2-201ENST00000389589 ZNF561-AS1K7EIQ3 104 aa16.83■□□□□ 0.28
SHOX2-201ENST00000389589 IGKV2D-24A0A075B6R9 120 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 C9JAW5 83 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 LST1O00453 97 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 NDUFC2O95298 119 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 M0QXV9 152 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 RPL28P46779 137 aaKnown RBP16.82■□□□□ 0.28
SHOX2-201ENST00000389589 UPK3BQ9BT76 320 aa16.82■□□□□ 0.28
SHOX2-201ENST00000389589 DNAH9Q9NYC9 4486 aa16.81■□□□□ 0.28
SHOX2-201ENST00000389589 SLC25A20O43772 301 aa16.81■□□□□ 0.28
SHOX2-201ENST00000389589 CLEC2BQ92478 149 aa16.81■□□□□ 0.28
SHOX2-201ENST00000389589 C15orf56Q8N910 161 aa16.79■□□□□ 0.28
SHOX2-201ENST00000389589 C2orf48Q96LS8 159 aa16.78■□□□□ 0.28
SHOX2-201ENST00000389589 C6orf48Q9UBA6 75 aa16.77■□□□□ 0.28
SHOX2-201ENST00000389589 TRBV10-2A0A0K0K1G8 114 aa16.77■□□□□ 0.27
SHOX2-201ENST00000389589 F8WDY8 70 aa16.77■□□□□ 0.27
SHOX2-201ENST00000389589 NHLRC4P0CG21 123 aaPredicted RBP16.77■□□□□ 0.27
SHOX2-201ENST00000389589 HIGD2BQ4VC39 106 aa16.77■□□□□ 0.27
SHOX2-201ENST00000389589 CAMK2N2Q96S95 79 aa16.77■□□□□ 0.27
SHOX2-201ENST00000389589 LINC01600Q96MT4 127 aa16.76■□□□□ 0.27
SHOX2-201ENST00000389589 Q9HAA7 133 aa16.76■□□□□ 0.27
SHOX2-201ENST00000389589 OR13C6PQ8NH95 151 aa16.76■□□□□ 0.27
SHOX2-201ENST00000389589 COL7A1Q02388 2944 aa16.75■□□□□ 0.27
SHOX2-201ENST00000389589 J3QR89 54 aa16.75■□□□□ 0.27
SHOX2-201ENST00000389589 TEN1Q86WV5 123 aa16.75■□□□□ 0.27
SHOX2-201ENST00000389589 ANKRD29Q8N6D5 301 aa16.74■□□□□ 0.27
SHOX2-201ENST00000389589 SMIM11BQ8TCY0 68 aa16.74■□□□□ 0.27
SHOX2-201ENST00000389589 RMI2Q96E14 147 aa16.73■□□□□ 0.27
SHOX2-201ENST00000389589 RNF151Q2KHN1 245 aa16.73■□□□□ 0.27
SHOX2-201ENST00000389589 STAB2Q8WWQ8 2551 aa16.72■□□□□ 0.27
SHOX2-201ENST00000389589 H3BT86 120 aa16.7■□□□□ 0.26
SHOX2-201ENST00000389589 H0YGX0 51 aa16.69■□□□□ 0.26
SHOX2-201ENST00000389589 TRACP01848 142 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms