RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PAX4O43316 350 aa12.92□□□□□ -0.34
CCDC3-201ENST00000378825 PF4P02776 101 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 COX7CP15954 63 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 CXCL5P42830 114 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 PDZD2O15018 2839 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 PRR3P79522 188 aaKnown RBP12.9□□□□□ -0.34
CCDC3-201ENST00000378825 HIST1H4AP62805 103 aaKnown RBP12.9□□□□□ -0.34
CCDC3-201ENST00000378825 CLPSL2Q6UWE3 100 aa12.89□□□□□ -0.35
CCDC3-201ENST00000378825 TRGV4A0A0C4DH28 118 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 SS18Q15532 418 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 CCL24O00175 119 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 NOTCH2Q04721 2471 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 ANK3Q12955 4377 aaKnown RBP12.87□□□□□ -0.35
CCDC3-201ENST00000378825 A0A1B0GX51 115 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 CFAP161Q6P656 301 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 LINC01561Q8N1V8 128 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 TRBV6-8A0A0A6YYG3 113 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 XCL1P47992 114 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 WFDC9Q8NEX5 89 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 OBSCN-AS1Q96MR7 158 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 FASNP49327 2511 aaKnown RBP12.85□□□□□ -0.35
CCDC3-201ENST00000378825 A0A087WZ39 114 aa12.84□□□□□ -0.35
CCDC3-201ENST00000378825 UNC79Q9P2D8 2635 aa12.84□□□□□ -0.35
CCDC3-201ENST00000378825 IBA57-AS1B1ANH7 110 aa12.83□□□□□ -0.35
CCDC3-201ENST00000378825 RPL18AQ02543 176 aaKnown RBP12.83□□□□□ -0.35
CCDC3-201ENST00000378825 H0YGX0 51 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 ATOX1O00244 68 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 HILS1P60008 231 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 FHL2Q14192 279 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 C6orf226Q5I0X4 101 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 KIR2DL5BQ8NHK3 375 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 TRBV6-4A0A1B0GX49 114 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 A0A096LPF7 62 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 LINC00959A0A1B0GUT2 108 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 CRYGAP11844 174 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 TMEM86BQ8N661 226 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 DEFB130BP0DP73 79 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 DEFB130AP0DP74 79 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 Q6JHZ5 121 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 LINC01006Q8NI28 216 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 C16orf74Q96GX8 76 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 OVOL2Q9BRP0 275 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 HECTD1Q9ULT8 2610 aa12.79□□□□□ -0.36
CCDC3-201ENST00000378825 NANOS2P60321 138 aaKnown RBP12.79□□□□□ -0.36
CCDC3-201ENST00000378825 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 KRTAP1-1Q07627 177 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 USP17L23D6RBM5 183 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 CSNK1G2-AS1Q8NCQ2 148 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 RNASE1P07998 156 aaKnown RBP12.77□□□□□ -0.36
CCDC3-201ENST00000378825 FAM19A5Q7Z5A7 132 aaPredicted RBP12.77□□□□□ -0.36
CCDC3-201ENST00000378825 ORMDL1Q9P0S3 153 aa12.77□□□□□ -0.36
CCDC3-201ENST00000378825 Q8N3U1 123 aa12.77□□□□□ -0.37
CCDC3-201ENST00000378825 C9orf116Q5BN46 136 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-201ENST00000378825 C19orf73Q9NVV2 129 aa12.76□□□□□ -0.37
CCDC3-201ENST00000378825 HIVEP2P31629 2446 aa12.76□□□□□ -0.37
CCDC3-201ENST00000378825 Q8NDZ9 215 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 UPK3BQ9BT76 320 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 VWFP04275 2813 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 LY6G6DO95868 133 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 SMR3AQ99954 134 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 FAM19A1Q7Z5A9 133 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 SERP2Q8N6R1 65 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 DSCR8Q96T75 97 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 J3KT08 172 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 IGLV10-54A0A075B6I4 117 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 OXTP01178 125 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 CCKP06307 115 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 GYPEP15421 78 aa12.72□□□□□ -0.37
CCDC3-201ENST00000378825 TRAV23DV6A0A075B6W5 121 aa12.71□□□□□ -0.37
CCDC3-201ENST00000378825 Q8N814 137 aa12.71□□□□□ -0.37
CCDC3-201ENST00000378825 ENHOQ6UWT2 76 aa12.69□□□□□ -0.38
CCDC3-201ENST00000378825 SPATA3Q8NHX4 192 aa12.69□□□□□ -0.38
CCDC3-201ENST00000378825 M0R2N4 97 aa12.68□□□□□ -0.38
CCDC3-201ENST00000378825 DPH3Q96FX2 82 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 C6orf99Q4VX62 202 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 Q8IZM0 81 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 LINC00269Q8N2A0 174 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 IGLV1-51P01701 117 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 KIAA0087Q14695 138 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 LINC00167Q96N53 147 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 OTOGQ6ZRI0 2925 aa12.65□□□□□ -0.38
CCDC3-201ENST00000378825 GHRHP01286 108 aa12.65□□□□□ -0.38
CCDC3-201ENST00000378825 DEFB4AO15263 64 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 C16orf95Q9H693 158 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 SMIM9A6NGZ8 99 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 TENM1Q9UKZ4 2725 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 C6orf223Q8N319 242 aa12.62□□□□□ -0.39
CCDC3-201ENST00000378825 KRTAP10-3P60369 221 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 C10orf25Q5T742 122 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 TMEM256-PLSCR3K7ERE1 68 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 TMEM258P61165 79 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 JMJD7-PLA2G4BH0Y9G9 81 aa12.6□□□□□ -0.39
CCDC3-201ENST00000378825 CHCHD10Q8WYQ3 142 aaPredicted RBP12.6□□□□□ -0.39
CCDC3-201ENST00000378825 J3QKU1 62 aa12.59□□□□□ -0.39
CCDC3-201ENST00000378825 A0A1B0GUV1 79 aa12.59□□□□□ -0.39
CCDC3-201ENST00000378825 RPS28P62857 69 aaKnown RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 KMT2BQ9UMN6 2715 aaPredicted RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 ANGP03950 147 aaKnown RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 C20orf197Q8N268 126 aa12.58□□□□□ -0.4
CCDC3-201ENST00000378825 UNQ6190/PRO20217Q6UXQ8 127 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 183.3 ms