RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KRTAP11-1Q8IUC1 163 aa13.27□□□□□ -0.29
CCDC28B-201ENST00000373602 SCGB3A1Q96QR1 104 aa13.27□□□□□ -0.29
CCDC28B-201ENST00000373602 GEMIN7Q9H840 131 aaKnown RBP13.27□□□□□ -0.29
CCDC28B-201ENST00000373602 CKS1BP61024 79 aa13.26□□□□□ -0.29
CCDC28B-201ENST00000373602 C9orf129Q5T035 196 aaKnown RBP13.26□□□□□ -0.29
CCDC28B-201ENST00000373602 C10orf91Q5T1B1 145 aa13.26□□□□□ -0.29
CCDC28B-201ENST00000373602 IGLV7-43P04211 117 aa13.25□□□□□ -0.29
CCDC28B-201ENST00000373602 ODF1Q14990 250 aa13.25□□□□□ -0.29
CCDC28B-201ENST00000373602 LINC01549A6NIU2 74 aa13.24□□□□□ -0.29
CCDC28B-201ENST00000373602 M0QXV9 152 aa13.24□□□□□ -0.29
CCDC28B-201ENST00000373602 RHEBQ15382 184 aa13.22□□□□□ -0.29
CCDC28B-201ENST00000373602 CARHSP1Q9Y2V2 147 aaKnown RBP13.22□□□□□ -0.29
CCDC28B-201ENST00000373602 TINCRA0A1B0GVN0 87 aa13.21□□□□□ -0.29
CCDC28B-201ENST00000373602 MRPL18Q9H0U6 180 aaKnown RBP13.21□□□□□ -0.29
CCDC28B-201ENST00000373602 F8VRH5 84 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 UBE2BP63146 152 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 FABP9Q0Z7S8 132 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 LINC00469Q8N7U9 141 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 DIRC1Q969H9 104 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 RPS10P5Q9NQ39 176 aa13.2□□□□□ -0.3
CCDC28B-201ENST00000373602 UBR4Q5T4S7 5183 aa13.19□□□□□ -0.3
CCDC28B-201ENST00000373602 IGLV5-45A0A087WSX0 123 aa13.19□□□□□ -0.3
CCDC28B-201ENST00000373602 CXCL5P42830 114 aa13.19□□□□□ -0.3
CCDC28B-201ENST00000373602 FA2HQ7L5A8 372 aa13.19□□□□□ -0.3
CCDC28B-201ENST00000373602 CST9LQ9H4G1 147 aa13.19□□□□□ -0.3
CCDC28B-201ENST00000373602 SMIM1B2RUZ4 78 aa13.18□□□□□ -0.3
CCDC28B-201ENST00000373602 PDZD11Q5EBL8 140 aa13.18□□□□□ -0.3
CCDC28B-201ENST00000373602 SMCO4Q9NRQ5 59 aa13.17□□□□□ -0.3
CCDC28B-201ENST00000373602 H0Y9J4 135 aa13.16□□□□□ -0.3
CCDC28B-201ENST00000373602 PMVKQ15126 192 aa13.16□□□□□ -0.3
CCDC28B-201ENST00000373602 XAGE1AQ9HD64 81 aa13.16□□□□□ -0.3
CCDC28B-201ENST00000373602 COX7B2Q8TF08 81 aa13.15□□□□□ -0.3
CCDC28B-201ENST00000373602 C22orf24Q9Y442 160 aa13.14□□□□□ -0.31
CCDC28B-201ENST00000373602 SPINK8P0C7L1 97 aa13.11□□□□□ -0.31
CCDC28B-201ENST00000373602 TRAPPC1Q9Y5R8 145 aa13.11□□□□□ -0.31
CCDC28B-201ENST00000373602 A0A096LNJ9 63 aa13.1□□□□□ -0.31
CCDC28B-201ENST00000373602 LBHQ53QV2 105 aaPredicted RBP13.1□□□□□ -0.31
CCDC28B-201ENST00000373602 PRR26Q8N8Z3 221 aa13.1□□□□□ -0.31
CCDC28B-201ENST00000373602 C18orf32Q8TCD1 76 aa13.1□□□□□ -0.31
CCDC28B-201ENST00000373602 URB1-AS1Q96HZ7 61 aa13.1□□□□□ -0.31
CCDC28B-201ENST00000373602 TP73-AS1Q9UF72 201 aa13.09□□□□□ -0.31
CCDC28B-201ENST00000373602 H3BRM9 83 aa13.08□□□□□ -0.32
CCDC28B-201ENST00000373602 KRTAP1-4P0C5Y4 121 aa13.08□□□□□ -0.32
CCDC28B-201ENST00000373602 LINC00614P0C842 121 aa13.08□□□□□ -0.32
CCDC28B-201ENST00000373602 IGLC3P0DOY3 106 aa13.08□□□□□ -0.32
CCDC28B-201ENST00000373602 NUPR1O60356 82 aa13.07□□□□□ -0.32
CCDC28B-201ENST00000373602 APOC3P02656 99 aa13.07□□□□□ -0.32
CCDC28B-201ENST00000373602 MRPL55Q7Z7F7 128 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-201ENST00000373602 IGLV1-50A0A075B6I6 118 aa13.05□□□□□ -0.32
CCDC28B-201ENST00000373602 ZNF861PO60384 105 aa13.05□□□□□ -0.32
CCDC28B-201ENST00000373602 HBDP02042 147 aa13.05□□□□□ -0.32
CCDC28B-201ENST00000373602 LRP2P98164 4655 aa13.04□□□□□ -0.32
CCDC28B-201ENST00000373602 SNAPINO95295 136 aa13.04□□□□□ -0.32
CCDC28B-201ENST00000373602 NDUFA6P56556 154 aa13.04□□□□□ -0.32
CCDC28B-201ENST00000373602 IGLV5-39A0A0G2JS06 123 aa13.03□□□□□ -0.32
CCDC28B-201ENST00000373602 RAB5BP61020 215 aa13.03□□□□□ -0.32
CCDC28B-201ENST00000373602 SVBPQ8N300 66 aa13.03□□□□□ -0.32
CCDC28B-201ENST00000373602 ZNF22P17026 224 aaPredicted RBP13.02□□□□□ -0.33
CCDC28B-201ENST00000373602 PMCHL1Q16048 86 aa13.02□□□□□ -0.33
CCDC28B-201ENST00000373602 NDUFA5Q16718 116 aa13.02□□□□□ -0.33
CCDC28B-201ENST00000373602 ATP5LO75964 103 aa13.01□□□□□ -0.33
CCDC28B-201ENST00000373602 LINC00167Q96N53 147 aa13.01□□□□□ -0.33
CCDC28B-201ENST00000373602 IGLV5-37A0A075B6J1 123 aa13□□□□□ -0.33
CCDC28B-201ENST00000373602 BCE1O60756 84 aa12.98□□□□□ -0.33
CCDC28B-201ENST00000373602 RPL37AP8A6NKH3 93 aa12.97□□□□□ -0.33
CCDC28B-201ENST00000373602 RPL13AP40429 203 aaKnown RBP12.97□□□□□ -0.33
CCDC28B-201ENST00000373602 BAGE3Q86Y29 109 aa12.97□□□□□ -0.33
CCDC28B-201ENST00000373602 YPEL4Q96NS1 127 aa12.96□□□□□ -0.33
CCDC28B-201ENST00000373602 GAGE10A6NGK3 116 aa12.95□□□□□ -0.34
CCDC28B-201ENST00000373602 C11orf86A6NJI1 115 aa12.95□□□□□ -0.34
CCDC28B-201ENST00000373602 PFN2P35080 140 aa12.95□□□□□ -0.34
CCDC28B-201ENST00000373602 RPL28P46779 137 aaKnown RBP12.95□□□□□ -0.34
CCDC28B-201ENST00000373602 NKAPP1Q8N9T2 125 aa12.94□□□□□ -0.34
CCDC28B-201ENST00000373602 ERG28Q9UKR5 140 aa12.93□□□□□ -0.34
CCDC28B-201ENST00000373602 COX17Q14061 63 aa12.92□□□□□ -0.34
CCDC28B-201ENST00000373602 TMEM170BQ5T4T1 132 aa12.92□□□□□ -0.34
CCDC28B-201ENST00000373602 CHCHD1Q96BP2 118 aaKnown RBP12.91□□□□□ -0.34
CCDC28B-201ENST00000373602 SND1-IT1Q9HBX3 110 aa12.91□□□□□ -0.34
CCDC28B-201ENST00000373602 SFTA2Q6UW10 78 aa12.9□□□□□ -0.34
CCDC28B-201ENST00000373602 CHTOPQ9Y3Y2 248 aaKnown RBP12.9□□□□□ -0.34
CCDC28B-201ENST00000373602 SCO1O75880 301 aa12.89□□□□□ -0.35
CCDC28B-201ENST00000373602 ZNF625Q96I27 306 aaPredicted RBP12.89□□□□□ -0.35
CCDC28B-201ENST00000373602 VPREB1P12018 145 aa12.88□□□□□ -0.35
CCDC28B-201ENST00000373602 KRTAP13-1Q8IUC0 172 aa12.88□□□□□ -0.35
CCDC28B-201ENST00000373602 TRAV12-1A0A0B4J245 112 aa12.87□□□□□ -0.35
CCDC28B-201ENST00000373602 IFI27L1Q96BM0 104 aa12.87□□□□□ -0.35
CCDC28B-201ENST00000373602 IGKV2-28A0A075B6P5 120 aa12.86□□□□□ -0.35
CCDC28B-201ENST00000373602 IGKV2D-28P01615 120 aa12.86□□□□□ -0.35
CCDC28B-201ENST00000373602 UBE2AP49459 152 aa12.85□□□□□ -0.35
CCDC28B-201ENST00000373602 RPL24P83731 157 aaKnown RBP12.85□□□□□ -0.35
CCDC28B-201ENST00000373602 A0A087X002 238 aa12.84□□□□□ -0.35
CCDC28B-201ENST00000373602 TMEM223A0PJW6 202 aa12.84□□□□□ -0.35
CCDC28B-201ENST00000373602 CBLN2Q8IUK8 224 aa12.83□□□□□ -0.36
CCDC28B-201ENST00000373602 LPAP08519 4548 aa12.82□□□□□ -0.36
CCDC28B-201ENST00000373602 CRYGAP11844 174 aa12.82□□□□□ -0.36
CCDC28B-201ENST00000373602 Q8NDZ9 215 aa12.82□□□□□ -0.36
CCDC28B-201ENST00000373602 HSBP1O75506 76 aa12.8□□□□□ -0.36
CCDC28B-201ENST00000373602 LINC00158P58513 81 aa12.8□□□□□ -0.36
CCDC28B-201ENST00000373602 FAM19A2Q8N3H0 131 aa12.8□□□□□ -0.36
CCDC28B-201ENST00000373602 TMEM126AQ9H061 195 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 181.9 ms