RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 C11orf68Q9H3H3 251 aaKnown RBP13.42□□□□□ -0.26
COL9A3-201ENST00000343916 LYRM9A8MSI8 78 aa13.41□□□□□ -0.26
COL9A3-201ENST00000343916 F8P00451 2351 aa13.4□□□□□ -0.26
COL9A3-201ENST00000343916 CCDC179H3BU77 68 aa13.4□□□□□ -0.26
COL9A3-201ENST00000343916 LINC00158P58513 81 aa13.4□□□□□ -0.26
COL9A3-201ENST00000343916 Q8N3U1 123 aa13.4□□□□□ -0.26
COL9A3-201ENST00000343916 CELA1Q9UNI1 258 aa13.4□□□□□ -0.26
COL9A3-201ENST00000343916 APOC4P55056 127 aa13.39□□□□□ -0.27
COL9A3-201ENST00000343916 SHISA2Q6UWI4 295 aa13.39□□□□□ -0.27
COL9A3-201ENST00000343916 PFN2P35080 140 aa13.39□□□□□ -0.27
COL9A3-201ENST00000343916 A0A1B0GUV1 79 aa13.38□□□□□ -0.27
COL9A3-201ENST00000343916 Q6Q795 121 aa13.38□□□□□ -0.27
COL9A3-201ENST00000343916 DAD1P61803 113 aa13.38□□□□□ -0.27
COL9A3-201ENST00000343916 COX7A2LO14548 114 aa13.37□□□□□ -0.27
COL9A3-201ENST00000343916 SND1-IT1Q9HBX3 110 aa13.37□□□□□ -0.27
COL9A3-201ENST00000343916 SS18Q15532 418 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 IGKV2-28A0A075B6P5 120 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 IGKV2D-28P01615 120 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 C6orf226Q5I0X4 101 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 LINC00337Q8N6G1 96 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 Q8NAQ8 132 aa13.36□□□□□ -0.27
COL9A3-201ENST00000343916 LINC00269Q8N2A0 174 aa13.35□□□□□ -0.27
COL9A3-201ENST00000343916 DEFB121Q5J5C9 76 aa13.34□□□□□ -0.27
COL9A3-201ENST00000343916 HTN3P15516 51 aa13.34□□□□□ -0.27
COL9A3-201ENST00000343916 CCL18P55774 89 aa13.34□□□□□ -0.27
COL9A3-201ENST00000343916 IGLV10-54A0A075B6I4 117 aa13.33□□□□□ -0.28
COL9A3-201ENST00000343916 IGHV4-30-4P0DP06 118 aa13.33□□□□□ -0.28
COL9A3-201ENST00000343916 FAM240AA0A1B0GVK7 77 aa13.33□□□□□ -0.28
COL9A3-201ENST00000343916 IBA57-AS1B1ANH7 110 aa13.33□□□□□ -0.28
COL9A3-201ENST00000343916 CRPP02741 224 aa13.33□□□□□ -0.28
COL9A3-201ENST00000343916 FAM218AQ96MZ4 157 aa13.32□□□□□ -0.28
COL9A3-201ENST00000343916 BAHCC1Q9P281 2608 aa13.32□□□□□ -0.28
COL9A3-201ENST00000343916 ANGP03950 147 aaKnown RBP13.31□□□□□ -0.28
COL9A3-201ENST00000343916 ATP5G1P05496 136 aa13.31□□□□□ -0.28
COL9A3-201ENST00000343916 PPDPFQ9H3Y8 114 aa13.31□□□□□ -0.28
COL9A3-201ENST00000343916 TRAV13-2A0A0B4J235 113 aa13.31□□□□□ -0.28
COL9A3-201ENST00000343916 CYSRT1A8MQ03 144 aa13.3□□□□□ -0.28
COL9A3-201ENST00000343916 MIFP14174 115 aa13.3□□□□□ -0.28
COL9A3-201ENST00000343916 MRPL23Q16540 153 aaKnown RBP13.3□□□□□ -0.28
COL9A3-201ENST00000343916 WFDC9Q8NEX5 89 aa13.3□□□□□ -0.28
COL9A3-201ENST00000343916 REG3AQ06141 175 aa13.28□□□□□ -0.28
COL9A3-201ENST00000343916 Q8IZM0 81 aa13.28□□□□□ -0.28
COL9A3-201ENST00000343916 CHCHD10Q8WYQ3 142 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-201ENST00000343916 SPART-AS1P0CW21 52 aa13.27□□□□□ -0.29
COL9A3-201ENST00000343916 RPL28P46779 137 aaKnown RBP13.27□□□□□ -0.29
COL9A3-201ENST00000343916 SVIPQ8NHG7 77 aa13.26□□□□□ -0.29
COL9A3-201ENST00000343916 SMIM11BQ8TCY0 68 aa13.26□□□□□ -0.29
COL9A3-201ENST00000343916 CD164L2Q6UWJ8 174 aa13.25□□□□□ -0.29
COL9A3-201ENST00000343916 OXLD1Q5BKU9 147 aa13.25□□□□□ -0.29
COL9A3-201ENST00000343916 SMCR5Q8TEV8 140 aa13.25□□□□□ -0.29
COL9A3-201ENST00000343916 Q9HAA7 133 aa13.24□□□□□ -0.29
COL9A3-201ENST00000343916 TRBV7-7A0A0K0K1E9 115 aa13.24□□□□□ -0.29
COL9A3-201ENST00000343916 TRACP01848 142 aa13.23□□□□□ -0.29
COL9A3-201ENST00000343916 BAALC-AS2P0C853 105 aa13.23□□□□□ -0.29
COL9A3-201ENST00000343916 KIAA0087Q14695 138 aa13.23□□□□□ -0.29
COL9A3-201ENST00000343916 OR13C6PQ8NH95 151 aa13.22□□□□□ -0.29
COL9A3-201ENST00000343916 WIPF1O43516 503 aa13.22□□□□□ -0.29
COL9A3-201ENST00000343916 MALP21145 153 aa13.22□□□□□ -0.29
COL9A3-201ENST00000343916 C22orf24Q9Y442 160 aa13.21□□□□□ -0.29
COL9A3-201ENST00000343916 FAM236AA0A1B0GUQ0 79 aa13.21□□□□□ -0.29
COL9A3-201ENST00000343916 FAM236BA0A1B0GV22 79 aa13.21□□□□□ -0.29
COL9A3-201ENST00000343916 C9orf116Q5BN46 136 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-201ENST00000343916 C3orf56Q8N813 242 aa13.21□□□□□ -0.29
COL9A3-201ENST00000343916 A0A087WYN8 130 aa13.2□□□□□ -0.3
COL9A3-201ENST00000343916 RETNQ9HD89 108 aa13.2□□□□□ -0.3
COL9A3-201ENST00000343916 ACYP1P07311 99 aa13.2□□□□□ -0.3
COL9A3-201ENST00000343916 PRR3P79522 188 aaKnown RBP13.19□□□□□ -0.3
COL9A3-201ENST00000343916 CFAP161Q6P656 301 aa13.19□□□□□ -0.3
COL9A3-201ENST00000343916 LINC01561Q8N1V8 128 aa13.19□□□□□ -0.3
COL9A3-201ENST00000343916 LELP1Q5T871 98 aa13.18□□□□□ -0.3
COL9A3-201ENST00000343916 KRTAP10-11P60412 298 aa13.18□□□□□ -0.3
COL9A3-201ENST00000343916 KLK12Q9UKR0 248 aa13.18□□□□□ -0.3
COL9A3-201ENST00000343916 LINC00526Q96FQ7 95 aa13.17□□□□□ -0.3
COL9A3-201ENST00000343916 ANK2Q01484 3957 aa13.16□□□□□ -0.3
COL9A3-201ENST00000343916 PKD1L1Q8TDX9 2849 aa13.16□□□□□ -0.3
COL9A3-201ENST00000343916 STAB1Q9NY15 2570 aa13.16□□□□□ -0.3
COL9A3-201ENST00000343916 C6orf223Q8N319 242 aa13.15□□□□□ -0.3
COL9A3-201ENST00000343916 FBN1P35555 2871 aaKnown RBP13.15□□□□□ -0.3
COL9A3-201ENST00000343916 GAGE2AQ6NT46 116 aa13.15□□□□□ -0.3
COL9A3-201ENST00000343916 LINC00643Q86TS7 51 aa13.15□□□□□ -0.3
COL9A3-201ENST00000343916 SMIM20Q8N5G0 67 aa13.14□□□□□ -0.31
COL9A3-201ENST00000343916 C10orf25Q5T742 122 aa13.13□□□□□ -0.31
COL9A3-201ENST00000343916 DNAL4O96015 105 aa13.13□□□□□ -0.31
COL9A3-201ENST00000343916 CXCL5P42830 114 aa13.13□□□□□ -0.31
COL9A3-201ENST00000343916 LYPD5Q6UWN5 251 aa13.13□□□□□ -0.31
COL9A3-201ENST00000343916 IMUPQ9GZP8 106 aa13.12□□□□□ -0.31
COL9A3-201ENST00000343916 LECT2O14960 151 aa13.12□□□□□ -0.31
COL9A3-201ENST00000343916 KRTAP24-1Q3LI83 254 aa13.12□□□□□ -0.31
COL9A3-201ENST00000343916 ENHOQ6UWT2 76 aa13.12□□□□□ -0.31
COL9A3-201ENST00000343916 UNQ6190/PRO20217Q6UXQ8 127 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 H0YGX0 51 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 SPAG11BQ08648 103 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 COX17Q14061 63 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 Q8NDZ9 215 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 PRR34Q9NV39 138 aa13.11□□□□□ -0.31
COL9A3-201ENST00000343916 C9orf129Q5T035 196 aaKnown RBP13.1□□□□□ -0.31
COL9A3-201ENST00000343916 TENM3Q9P273 2699 aa13.09□□□□□ -0.31
COL9A3-201ENST00000343916 SLPIP03973 132 aa13.09□□□□□ -0.31
COL9A3-201ENST00000343916 INAFM2P0DMQ5 153 aa13.09□□□□□ -0.31
COL9A3-201ENST00000343916 NANOS2P60321 138 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms