RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 NSD1Q96L73 2696 aaPredicted RBP8.52□□□□□ -1.04
USP1-201ENST00000339950 FAM222AQ5U5X8 452 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 C11orf72Q8NBR9 251 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 PKIGQ9Y2B9 76 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 SMIM1B2RUZ4 78 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 LST1O00453 97 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 COX7A2LO14548 114 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 DNAJC30Q96LL9 226 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 FAM110AQ9BQ89 295 aa8.52□□□□□ -1.05
USP1-201ENST00000339950 NBPF19A0A087WUL8 3843 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 TIRAPP58753 221 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 GHRHP01286 108 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 KLK12Q9UKR0 248 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 KLK9Q2XQG4 91 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 SOSTDC1Q6X4U4 206 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 PYGO1Q9Y3Y4 419 aa8.51□□□□□ -1.05
USP1-201ENST00000339950 PDZD2O15018 2839 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 TRAV25A0A0B4J276 109 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 A0A0U1RQV1 116 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 A8MTW9 85 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 INAFM1C9JVW0 142 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 HRCT1Q6UXD1 115 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 CDC42SE2Q9NRR3 84 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 ORMDL1Q9P0S3 153 aa8.5□□□□□ -1.05
USP1-201ENST00000339950 SCXQ7RTU7 201 aa8.49□□□□□ -1.05
USP1-201ENST00000339950 XAGE1AQ9HD64 81 aa8.49□□□□□ -1.05
USP1-201ENST00000339950 C16orf74Q96GX8 76 aa8.49□□□□□ -1.05
USP1-201ENST00000339950 NDUFA1O15239 70 aa8.48□□□□□ -1.05
USP1-201ENST00000339950 VWFP04275 2813 aa8.48□□□□□ -1.05
USP1-201ENST00000339950 ENHOQ6UWT2 76 aa8.47□□□□□ -1.05
USP1-201ENST00000339950 FAM19A5Q7Z5A7 132 aaPredicted RBP8.47□□□□□ -1.05
USP1-201ENST00000339950 TRBV6-8A0A0A6YYG3 113 aa8.47□□□□□ -1.05
USP1-201ENST00000339950 HIGD2BQ4VC39 106 aa8.47□□□□□ -1.05
USP1-201ENST00000339950 OVOL2Q9BRP0 275 aa8.46□□□□□ -1.05
USP1-201ENST00000339950 IGHV4-28A0A0C4DH34 117 aa8.46□□□□□ -1.05
USP1-201ENST00000339950 CCL18P55774 89 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 BRK1Q8WUW1 75 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 SPANXDQ9BXN6 97 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 SPANXCQ9NY87 97 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 SNURFQ9Y675 71 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 USP17L23D6RBM5 183 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 J3QKU1 62 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 SMIM11BQ8TCY0 68 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 LITAFQ99732 161 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 NHLRC4P0CG21 123 aaPredicted RBP8.45□□□□□ -1.06
USP1-201ENST00000339950 C5orf47Q569G3 176 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 MPLKIPQ8TAP9 179 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 FAM218AQ96MZ4 157 aa8.45□□□□□ -1.06
USP1-201ENST00000339950 CR1P17927 2039 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 A0A087WYN8 130 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 BRI3O95415 125 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 TRBV10-1A0A0K0K1A3 114 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 COX7CP15954 63 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 RPL18AQ02543 176 aaKnown RBP8.44□□□□□ -1.06
USP1-201ENST00000339950 LINC00337Q8N6G1 96 aa8.44□□□□□ -1.06
USP1-201ENST00000339950 DEFB105AQ8NG35 78 aa8.43□□□□□ -1.06
USP1-201ENST00000339950 C6orf223Q8N319 242 aa8.42□□□□□ -1.06
USP1-201ENST00000339950 CXCL5P42830 114 aa8.42□□□□□ -1.06
USP1-201ENST00000339950 SMIM9A6NGZ8 99 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 DEFB121Q5J5C9 76 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 SPATA3Q8NHX4 192 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 RETNQ9HD89 108 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 A0A096LNT2 108 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 LINC00959A0A1B0GUT2 108 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 H0YGX0 51 aa8.41□□□□□ -1.06
USP1-201ENST00000339950 CHCHD10Q8WYQ3 142 aaPredicted RBP8.41□□□□□ -1.06
USP1-201ENST00000339950 SBSPONQ8IVN8 264 aa8.4□□□□□ -1.06
USP1-201ENST00000339950 FAM104AQ969W3 186 aa8.4□□□□□ -1.06
USP1-201ENST00000339950 PRO0255Q9UI72 69 aa8.4□□□□□ -1.06
USP1-201ENST00000339950 FHL2Q14192 279 aa8.4□□□□□ -1.06
USP1-201ENST00000339950 OXLD1Q5BKU9 147 aa8.4□□□□□ -1.06
USP1-201ENST00000339950 Q6Q795 121 aa8.4□□□□□ -1.07
USP1-201ENST00000339950 UPK3BQ9BT76 320 aa8.4□□□□□ -1.07
USP1-201ENST00000339950 BEAN1Q3B7T3 259 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 KIR2DL5BQ8NHK3 375 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 TENM1Q9UKZ4 2725 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 FBN1P35555 2871 aaKnown RBP8.39□□□□□ -1.07
USP1-201ENST00000339950 REG3AQ06141 175 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 C6orf99Q4VX62 202 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 LY6G6DO95868 133 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 SPAG11BQ08648 103 aa8.39□□□□□ -1.07
USP1-201ENST00000339950 HILS1P60008 231 aa8.38□□□□□ -1.07
USP1-201ENST00000339950 UNQ6190/PRO20217Q6UXQ8 127 aa8.38□□□□□ -1.07
USP1-201ENST00000339950 CSDC2Q9Y534 153 aaKnown RBP8.38□□□□□ -1.07
USP1-201ENST00000339950 ZNF561-AS1K7EIQ3 104 aa8.38□□□□□ -1.07
USP1-201ENST00000339950 SERP2Q8N6R1 65 aa8.38□□□□□ -1.07
USP1-201ENST00000339950 IGKV2D-24A0A075B6R9 120 aa8.37□□□□□ -1.07
USP1-201ENST00000339950 TRBV6-4A0A1B0GX49 114 aa8.37□□□□□ -1.07
USP1-201ENST00000339950 IGLV1-51P01701 117 aa8.37□□□□□ -1.07
USP1-201ENST00000339950 CMC4P56277 68 aaPredicted RBP8.37□□□□□ -1.07
USP1-201ENST00000339950 LINC00846Q9NV44 126 aa8.36□□□□□ -1.07
USP1-201ENST00000339950 GIG44P09565 113 aaPredicted RBP8.35□□□□□ -1.07
USP1-201ENST00000339950 FAM19A1Q7Z5A9 133 aa8.35□□□□□ -1.07
USP1-201ENST00000339950 IMUPQ9GZP8 106 aa8.35□□□□□ -1.07
USP1-201ENST00000339950 LRCOL1A6NCL2 159 aa8.35□□□□□ -1.07
USP1-201ENST00000339950 TIMM17BO60830 172 aa8.35□□□□□ -1.07
USP1-201ENST00000339950 C9orf129Q5T035 196 aaKnown RBP8.34□□□□□ -1.07
USP1-201ENST00000339950 TENM4Q6N022 2769 aa8.34□□□□□ -1.07
USP1-201ENST00000339950 FAM236DA0A1B0GTK5 79 aa8.34□□□□□ -1.07
USP1-201ENST00000339950 FAM240AA0A1B0GVK7 77 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms