RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ATP5G1P05496 136 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 SHISA2Q6UWI4 295 aa10.25□□□□□ -0.77
CLCNKA-201ENST00000331433 C6orf226Q5I0X4 101 aa10.24□□□□□ -0.77
CLCNKA-201ENST00000331433 SND1-IT1Q9HBX3 110 aa10.23□□□□□ -0.77
CLCNKA-201ENST00000331433 IGLV10-54A0A075B6I4 117 aa10.23□□□□□ -0.77
CLCNKA-201ENST00000331433 LINC01600Q96MT4 127 aa10.23□□□□□ -0.77
CLCNKA-201ENST00000331433 IGKV2-28A0A075B6P5 120 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 IBA57-AS1B1ANH7 110 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 COX7A2LO14548 114 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 WIPF1O43516 503 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 IGKV2D-28P01615 120 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 ANGP03950 147 aaKnown RBP10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 SPART-AS1P0CW21 52 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 LINC00337Q8N6G1 96 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 CCL18P55774 89 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 PPDPFQ9H3Y8 114 aa10.22□□□□□ -0.77
CLCNKA-201ENST00000331433 OXLD1Q5BKU9 147 aa10.21□□□□□ -0.77
CLCNKA-201ENST00000331433 STAB1Q9NY15 2570 aa10.21□□□□□ -0.78
CLCNKA-201ENST00000331433 H3BT86 120 aa10.21□□□□□ -0.78
CLCNKA-201ENST00000331433 CRPP02741 224 aa10.21□□□□□ -0.78
CLCNKA-201ENST00000331433 ANK2Q01484 3957 aa10.2□□□□□ -0.78
CLCNKA-201ENST00000331433 UBE2WQ96B02 151 aa10.2□□□□□ -0.78
CLCNKA-201ENST00000331433 PKD1L1Q8TDX9 2849 aa10.2□□□□□ -0.78
CLCNKA-201ENST00000331433 XGP55808 180 aa10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 CHCHD10Q8WYQ3 142 aaPredicted RBP10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 TRAV13-2A0A0B4J235 113 aa10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 MT-ATP8P03928 68 aa10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 REG3AQ06141 175 aa10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 Q8IZM0 81 aa10.19□□□□□ -0.78
CLCNKA-201ENST00000331433 MRPL23Q16540 153 aaKnown RBP10.18□□□□□ -0.78
CLCNKA-201ENST00000331433 CD164L2Q6UWJ8 174 aa10.18□□□□□ -0.78
CLCNKA-201ENST00000331433 FAM218AQ96MZ4 157 aa10.18□□□□□ -0.78
CLCNKA-201ENST00000331433 RETNQ9HD89 108 aa10.17□□□□□ -0.78
CLCNKA-201ENST00000331433 FBN1P35555 2871 aaKnown RBP10.17□□□□□ -0.78
CLCNKA-201ENST00000331433 KRTAP10-11P60412 298 aa10.17□□□□□ -0.78
CLCNKA-201ENST00000331433 RPL28P46779 137 aaKnown RBP10.15□□□□□ -0.78
CLCNKA-201ENST00000331433 CKS1BP61024 79 aa10.15□□□□□ -0.78
CLCNKA-201ENST00000331433 KIAA0087Q14695 138 aa10.15□□□□□ -0.78
CLCNKA-201ENST00000331433 SCGB1A1P11684 91 aa10.15□□□□□ -0.78
CLCNKA-201ENST00000331433 TRAV8-4A0A0B4J246 113 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 MALP21145 153 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 LELP1Q5T871 98 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 LINC01561Q8N1V8 128 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 SMIM11BQ8TCY0 68 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 KRTAP24-1Q3LI83 254 aa10.14□□□□□ -0.79
CLCNKA-201ENST00000331433 CFAP161Q6P656 301 aa10.13□□□□□ -0.79
CLCNKA-201ENST00000331433 TENM3Q9P273 2699 aa10.13□□□□□ -0.79
CLCNKA-201ENST00000331433 CMYA5Q8N3K9 4069 aa10.13□□□□□ -0.79
CLCNKA-201ENST00000331433 TRACP01848 142 aa10.12□□□□□ -0.79
CLCNKA-201ENST00000331433 C9orf116Q5BN46 136 aaPredicted RBP10.12□□□□□ -0.79
CLCNKA-201ENST00000331433 OR13C6PQ8NH95 151 aa10.12□□□□□ -0.79
CLCNKA-201ENST00000331433 KLK12Q9UKR0 248 aa10.12□□□□□ -0.79
CLCNKA-201ENST00000331433 Q9HAA7 133 aa10.11□□□□□ -0.79
CLCNKA-201ENST00000331433 LYPD5Q6UWN5 251 aa10.1□□□□□ -0.79
CLCNKA-201ENST00000331433 A0A087WYN8 130 aa10.09□□□□□ -0.79
CLCNKA-201ENST00000331433 BAALC-AS2P0C853 105 aa10.09□□□□□ -0.79
CLCNKA-201ENST00000331433 PRR3P79522 188 aaKnown RBP10.09□□□□□ -0.79
CLCNKA-201ENST00000331433 LINC00526Q96FQ7 95 aa10.09□□□□□ -0.79
CLCNKA-201ENST00000331433 C6orf223Q8N319 242 aa10.09□□□□□ -0.79
CLCNKA-201ENST00000331433 CXCL5P42830 114 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 DEFB121Q5J5C9 76 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 NOTCH1P46531 2555 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 ENHOQ6UWT2 76 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 C3orf56Q8N813 242 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 PRR34Q9NV39 138 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 C22orf24Q9Y442 160 aa10.08□□□□□ -0.8
CLCNKA-201ENST00000331433 Q6ZTC4 211 aa10.07□□□□□ -0.8
CLCNKA-201ENST00000331433 C10orf25Q5T742 122 aa10.07□□□□□ -0.8
CLCNKA-201ENST00000331433 SPAG11BQ08648 103 aa10.06□□□□□ -0.8
CLCNKA-201ENST00000331433 KPRPQ5T749 579 aaPredicted RBP10.06□□□□□ -0.8
CLCNKA-201ENST00000331433 EGFEM1PQ0D2K5 195 aa10.06□□□□□ -0.8
CLCNKA-201ENST00000331433 COX17Q14061 63 aa10.06□□□□□ -0.8
CLCNKA-201ENST00000331433 UNQ6190/PRO20217Q6UXQ8 127 aa10.06□□□□□ -0.8
CLCNKA-201ENST00000331433 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
CLCNKA-201ENST00000331433 WFDC10BQ8IUB3 73 aa10.05□□□□□ -0.8
CLCNKA-201ENST00000331433 KLK5Q9Y337 293 aaPredicted RBP10.05□□□□□ -0.8
CLCNKA-201ENST00000331433 H0YGX0 51 aa10.04□□□□□ -0.8
CLCNKA-201ENST00000331433 Q8NDZ9 215 aa10.04□□□□□ -0.8
CLCNKA-201ENST00000331433 DNAL4O96015 105 aa10.04□□□□□ -0.8
CLCNKA-201ENST00000331433 LECT2O14960 151 aa10.03□□□□□ -0.8
CLCNKA-201ENST00000331433 SNCGO76070 127 aa10.03□□□□□ -0.8
CLCNKA-201ENST00000331433 C15orf53Q8NAA6 179 aa10.03□□□□□ -0.8
CLCNKA-201ENST00000331433 NANOS2P60321 138 aaKnown RBP10.02□□□□□ -0.8
CLCNKA-201ENST00000331433 FAM240AA0A1B0GVK7 77 aa10.02□□□□□ -0.81
CLCNKA-201ENST00000331433 TTC32Q5I0X7 151 aa10.02□□□□□ -0.81
CLCNKA-201ENST00000331433 A0A0J9YWU9 116 aa10.01□□□□□ -0.81
CLCNKA-201ENST00000331433 NCR3O14931 201 aa10.01□□□□□ -0.81
CLCNKA-201ENST00000331433 DNAH3Q8TD57 4116 aa10.01□□□□□ -0.81
CLCNKA-201ENST00000331433 NDUFC2O95298 119 aa10□□□□□ -0.81
CLCNKA-201ENST00000331433 H3BNG1 76 aa10□□□□□ -0.81
CLCNKA-201ENST00000331433 SLPIP03973 132 aa10□□□□□ -0.81
CLCNKA-201ENST00000331433 C9orf129Q5T035 196 aaKnown RBP9.99□□□□□ -0.81
CLCNKA-201ENST00000331433 ESRGQ1W209 222 aa9.98□□□□□ -0.81
CLCNKA-201ENST00000331433 TMEM126AQ9H061 195 aa9.98□□□□□ -0.81
CLCNKA-201ENST00000331433 NBEAL1Q6ZS30 2694 aa9.98□□□□□ -0.81
CLCNKA-201ENST00000331433 GAGE2BQ13066 116 aa9.97□□□□□ -0.81
CLCNKA-201ENST00000331433 GAGE2EQ4V326 116 aa9.97□□□□□ -0.81
CLCNKA-201ENST00000331433 GAGE2DQ9UEU5 116 aa9.97□□□□□ -0.81
CLCNKA-201ENST00000331433 A0A1B0GV72 72 aa9.96□□□□□ -0.81
CLCNKA-201ENST00000331433 C6orf48Q9UBA6 75 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms