RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 LRP2P98164 4655 aa10.82□□□□□ -0.68
HDDC3-201ENST00000330334 C9orf129Q5T035 196 aaKnown RBP10.81□□□□□ -0.68
HDDC3-201ENST00000330334 KRTAP11-1Q8IUC1 163 aa10.81□□□□□ -0.68
HDDC3-201ENST00000330334 ALKBH7Q9BT30 221 aaPredicted RBP10.81□□□□□ -0.68
HDDC3-201ENST00000330334 CDKN2A-AS1Q9UH64 79 aa10.81□□□□□ -0.68
HDDC3-201ENST00000330334 S100PP25815 95 aa10.8□□□□□ -0.68
HDDC3-201ENST00000330334 COX19Q49B96 90 aa10.8□□□□□ -0.68
HDDC3-201ENST00000330334 GEMIN7Q9H840 131 aaKnown RBP10.8□□□□□ -0.68
HDDC3-201ENST00000330334 M0QXV9 152 aa10.79□□□□□ -0.68
HDDC3-201ENST00000330334 SCGB3A1Q96QR1 104 aa10.79□□□□□ -0.68
HDDC3-201ENST00000330334 TOMM7Q9P0U1 55 aa10.79□□□□□ -0.68
HDDC3-201ENST00000330334 F8VRH5 84 aa10.77□□□□□ -0.69
HDDC3-201ENST00000330334 H0Y9J4 135 aa10.77□□□□□ -0.69
HDDC3-201ENST00000330334 CXCL5P42830 114 aa10.77□□□□□ -0.69
HDDC3-201ENST00000330334 TINCRA0A1B0GVN0 87 aa10.76□□□□□ -0.69
HDDC3-201ENST00000330334 UBE2BP63146 152 aa10.76□□□□□ -0.69
HDDC3-201ENST00000330334 C10orf91Q5T1B1 145 aa10.76□□□□□ -0.69
HDDC3-201ENST00000330334 IGLV5-45A0A087WSX0 123 aa10.75□□□□□ -0.69
HDDC3-201ENST00000330334 PDZD11Q5EBL8 140 aa10.75□□□□□ -0.69
HDDC3-201ENST00000330334 LINC00469Q8N7U9 141 aa10.74□□□□□ -0.69
HDDC3-201ENST00000330334 CST9LQ9H4G1 147 aa10.74□□□□□ -0.69
HDDC3-201ENST00000330334 SMIM1B2RUZ4 78 aa10.73□□□□□ -0.69
HDDC3-201ENST00000330334 RHEBQ15382 184 aa10.73□□□□□ -0.69
HDDC3-201ENST00000330334 LBHQ53QV2 105 aaPredicted RBP10.72□□□□□ -0.69
HDDC3-201ENST00000330334 COMMD7Q86VX2 200 aa10.72□□□□□ -0.69
HDDC3-201ENST00000330334 TP73-AS1Q9UF72 201 aa10.72□□□□□ -0.69
HDDC3-201ENST00000330334 CARHSP1Q9Y2V2 147 aaKnown RBP10.72□□□□□ -0.69
HDDC3-201ENST00000330334 C22orf24Q9Y442 160 aa10.72□□□□□ -0.69
HDDC3-201ENST00000330334 IGLV1-50A0A075B6I6 118 aa10.71□□□□□ -0.69
HDDC3-201ENST00000330334 FABP9Q0Z7S8 132 aa10.71□□□□□ -0.69
HDDC3-201ENST00000330334 PMVKQ15126 192 aa10.71□□□□□ -0.69
HDDC3-201ENST00000330334 FA2HQ7L5A8 372 aa10.71□□□□□ -0.69
HDDC3-201ENST00000330334 MRPL18Q9H0U6 180 aaKnown RBP10.71□□□□□ -0.69
HDDC3-201ENST00000330334 XAGE1AQ9HD64 81 aa10.71□□□□□ -0.69
HDDC3-201ENST00000330334 NUPR1O60356 82 aa10.7□□□□□ -0.7
HDDC3-201ENST00000330334 PRR26Q8N8Z3 221 aa10.7□□□□□ -0.7
HDDC3-201ENST00000330334 COX7B2Q8TF08 81 aa10.7□□□□□ -0.7
HDDC3-201ENST00000330334 KRTAP1-4P0C5Y4 121 aa10.69□□□□□ -0.7
HDDC3-201ENST00000330334 SMCO4Q9NRQ5 59 aa10.69□□□□□ -0.7
HDDC3-201ENST00000330334 ZNF861PO60384 105 aa10.68□□□□□ -0.7
HDDC3-201ENST00000330334 RPS10P5Q9NQ39 176 aa10.68□□□□□ -0.7
HDDC3-201ENST00000330334 H3BRM9 83 aa10.66□□□□□ -0.7
HDDC3-201ENST00000330334 MRPL55Q7Z7F7 128 aaKnown RBP10.66□□□□□ -0.7
HDDC3-201ENST00000330334 SPINK8P0C7L1 97 aa10.64□□□□□ -0.71
HDDC3-201ENST00000330334 LINC00614P0C842 121 aa10.64□□□□□ -0.71
HDDC3-201ENST00000330334 IGLC3P0DOY3 106 aa10.64□□□□□ -0.71
HDDC3-201ENST00000330334 RPL13AP40429 203 aaKnown RBP10.64□□□□□ -0.71
HDDC3-201ENST00000330334 A0A096LNJ9 63 aa10.63□□□□□ -0.71
HDDC3-201ENST00000330334 TRAPPC1Q9Y5R8 145 aa10.63□□□□□ -0.71
HDDC3-201ENST00000330334 IGLV5-37A0A075B6J1 123 aa10.62□□□□□ -0.71
HDDC3-201ENST00000330334 IGLV5-39A0A0G2JS06 123 aa10.62□□□□□ -0.71
HDDC3-201ENST00000330334 C18orf32Q8TCD1 76 aa10.62□□□□□ -0.71
HDDC3-201ENST00000330334 RNF213Q63HN8 5207 aa10.61□□□□□ -0.71
HDDC3-201ENST00000330334 BCE1O60756 84 aa10.61□□□□□ -0.71
HDDC3-201ENST00000330334 ATP5LO75964 103 aa10.61□□□□□ -0.71
HDDC3-201ENST00000330334 URB1-AS1Q96HZ7 61 aa10.61□□□□□ -0.71
HDDC3-201ENST00000330334 LINC00167Q96N53 147 aa10.61□□□□□ -0.71
HDDC3-201ENST00000330334 HBDP02042 147 aa10.6□□□□□ -0.71
HDDC3-201ENST00000330334 RPL28P46779 137 aaKnown RBP10.6□□□□□ -0.71
HDDC3-201ENST00000330334 RAB5BP61020 215 aa10.59□□□□□ -0.71
HDDC3-201ENST00000330334 ZNF22P17026 224 aaPredicted RBP10.57□□□□□ -0.72
HDDC3-201ENST00000330334 NDUFA6P56556 154 aa10.57□□□□□ -0.72
HDDC3-201ENST00000330334 COX17Q14061 63 aa10.57□□□□□ -0.72
HDDC3-201ENST00000330334 RPL37AP8A6NKH3 93 aa10.56□□□□□ -0.72
HDDC3-201ENST00000330334 SNAPINO95295 136 aa10.56□□□□□ -0.72
HDDC3-201ENST00000330334 APOC3P02656 99 aa10.56□□□□□ -0.72
HDDC3-201ENST00000330334 SVBPQ8N300 66 aa10.56□□□□□ -0.72
HDDC3-201ENST00000330334 NDUFA5Q16718 116 aa10.55□□□□□ -0.72
HDDC3-201ENST00000330334 SFTA2Q6UW10 78 aa10.55□□□□□ -0.72
HDDC3-201ENST00000330334 NKAPP1Q8N9T2 125 aa10.55□□□□□ -0.72
HDDC3-201ENST00000330334 LPAP08519 4548 aa10.54□□□□□ -0.72
HDDC3-201ENST00000330334 BAGE3Q86Y29 109 aa10.54□□□□□ -0.72
HDDC3-201ENST00000330334 PFN2P35080 140 aa10.53□□□□□ -0.72
HDDC3-201ENST00000330334 PMCHL1Q16048 86 aa10.53□□□□□ -0.72
HDDC3-201ENST00000330334 KRTAP13-1Q8IUC0 172 aa10.53□□□□□ -0.72
HDDC3-201ENST00000330334 ERG28Q9UKR5 140 aa10.53□□□□□ -0.72
HDDC3-201ENST00000330334 GAGE10A6NGK3 116 aa10.52□□□□□ -0.73
HDDC3-201ENST00000330334 SND1-IT1Q9HBX3 110 aa10.52□□□□□ -0.73
HDDC3-201ENST00000330334 C11orf86A6NJI1 115 aa10.51□□□□□ -0.73
HDDC3-201ENST00000330334 YPEL4Q96NS1 127 aa10.51□□□□□ -0.73
HDDC3-201ENST00000330334 CRYGAP11844 174 aa10.5□□□□□ -0.73
HDDC3-201ENST00000330334 VPREB1P12018 145 aa10.5□□□□□ -0.73
HDDC3-201ENST00000330334 RPL24P83731 157 aaKnown RBP10.5□□□□□ -0.73
HDDC3-201ENST00000330334 TMEM170BQ5T4T1 132 aa10.5□□□□□ -0.73
HDDC3-201ENST00000330334 CHCHD1Q96BP2 118 aaKnown RBP10.5□□□□□ -0.73
HDDC3-201ENST00000330334 ZNF625Q96I27 306 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-201ENST00000330334 A0A087X002 238 aa10.48□□□□□ -0.73
HDDC3-201ENST00000330334 TRAV12-1A0A0B4J245 112 aa10.48□□□□□ -0.73
HDDC3-201ENST00000330334 UBE2AP49459 152 aa10.48□□□□□ -0.73
HDDC3-201ENST00000330334 CHTOPQ9Y3Y2 248 aaKnown RBP10.48□□□□□ -0.73
HDDC3-201ENST00000330334 IGKV2-28A0A075B6P5 120 aa10.46□□□□□ -0.73
HDDC3-201ENST00000330334 IGKV2D-28P01615 120 aa10.46□□□□□ -0.73
HDDC3-201ENST00000330334 SCO1O75880 301 aa10.45□□□□□ -0.74
HDDC3-201ENST00000330334 FAM229BQ4G0N7 80 aa10.45□□□□□ -0.74
HDDC3-201ENST00000330334 TYMSOSQ8TAI1 123 aa10.45□□□□□ -0.74
HDDC3-201ENST00000330334 IFI27L1Q96BM0 104 aa10.45□□□□□ -0.74
HDDC3-201ENST00000330334 TMEM223A0PJW6 202 aa10.44□□□□□ -0.74
HDDC3-201ENST00000330334 PRR4Q16378 134 aa10.43□□□□□ -0.74
HDDC3-201ENST00000330334 TMEM126AQ9H061 195 aa10.43□□□□□ -0.74
HDDC3-201ENST00000330334 M0R378 163 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms