RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 CDC42SE2Q9NRR3 84 aa11.16□□□□□ -0.62
USH1C-202ENST00000318024 CXCL5P42830 114 aa11.15□□□□□ -0.62
USH1C-202ENST00000318024 RPL28P46779 137 aaKnown RBP11.15□□□□□ -0.62
USH1C-202ENST00000318024 Q6ZTI0 123 aa11.15□□□□□ -0.62
USH1C-202ENST00000318024 SMIM9A6NGZ8 99 aa11.15□□□□□ -0.63
USH1C-202ENST00000318024 C3orf22Q8N5N4 141 aa11.15□□□□□ -0.63
USH1C-202ENST00000318024 PLAC8L1A1L4L8 177 aa11.14□□□□□ -0.63
USH1C-202ENST00000318024 TRAV13-1A0A0B4J241 112 aa11.13□□□□□ -0.63
USH1C-202ENST00000318024 ATP5G1P05496 136 aa11.13□□□□□ -0.63
USH1C-202ENST00000318024 IGHV4-30-4P0DP06 118 aa11.13□□□□□ -0.63
USH1C-202ENST00000318024 DEFB135Q30KP9 77 aa11.13□□□□□ -0.63
USH1C-202ENST00000318024 HIST1H4AP62805 103 aaKnown RBP11.13□□□□□ -0.63
USH1C-202ENST00000318024 C16orf74Q96GX8 76 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 IGKV2-28A0A075B6P5 120 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 TRBV10-1A0A0K0K1A3 114 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 UQCRQO14949 82 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 IGKV2D-28P01615 120 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 LINC00337Q8N6G1 96 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 LINC00526Q96FQ7 95 aa11.12□□□□□ -0.63
USH1C-202ENST00000318024 INAFM2P0DMQ5 153 aa11.11□□□□□ -0.63
USH1C-202ENST00000318024 C2orf48Q96LS8 159 aa11.11□□□□□ -0.63
USH1C-202ENST00000318024 MDFIQ99750 246 aa11.11□□□□□ -0.63
USH1C-202ENST00000318024 MALP21145 153 aa11.11□□□□□ -0.63
USH1C-202ENST00000318024 TRAV13-2A0A0B4J235 113 aa11.1□□□□□ -0.63
USH1C-202ENST00000318024 K7EQD1 137 aa11.1□□□□□ -0.63
USH1C-202ENST00000318024 DEFB4AO15263 64 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 RPL36AP83881 106 aaKnown RBP11.09□□□□□ -0.63
USH1C-202ENST00000318024 RPL36ALQ969Q0 106 aaKnown RBP11.09□□□□□ -0.63
USH1C-202ENST00000318024 Q9HAA7 133 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 X6R8D5 127 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 APOC4P55056 127 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 OBSCN-AS1Q96MR7 158 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 NOTCH1P46531 2555 aa11.09□□□□□ -0.63
USH1C-202ENST00000318024 TRGV2A0A075B6R0 118 aa11.08□□□□□ -0.64
USH1C-202ENST00000318024 C9orf129Q5T035 196 aaKnown RBP11.08□□□□□ -0.64
USH1C-202ENST00000318024 C9orf153Q5TBE3 101 aa11.08□□□□□ -0.64
USH1C-202ENST00000318024 KIR2DL5BQ8NHK3 375 aa11.07□□□□□ -0.64
USH1C-202ENST00000318024 DEFB130BP0DP73 79 aa11.07□□□□□ -0.64
USH1C-202ENST00000318024 DEFB130AP0DP74 79 aa11.07□□□□□ -0.64
USH1C-202ENST00000318024 COX7CP15954 63 aa11.07□□□□□ -0.64
USH1C-202ENST00000318024 EGFEM1PQ0D2K5 195 aa11.07□□□□□ -0.64
USH1C-202ENST00000318024 MIR7-3HGQ8N6C7 128 aa11.06□□□□□ -0.64
USH1C-202ENST00000318024 DNAH3Q8TD57 4116 aa11.06□□□□□ -0.64
USH1C-202ENST00000318024 A0A087WYN8 130 aa11.05□□□□□ -0.64
USH1C-202ENST00000318024 CRPP02741 224 aa11.05□□□□□ -0.64
USH1C-202ENST00000318024 PRB2P02812 416 aaPredicted RBP11.05□□□□□ -0.64
USH1C-202ENST00000318024 GAGE2AQ6NT46 116 aa11.05□□□□□ -0.64
USH1C-202ENST00000318024 SMIM11BQ8TCY0 68 aa11.05□□□□□ -0.64
USH1C-202ENST00000318024 OVOL2Q9BRP0 275 aa11.05□□□□□ -0.64
USH1C-202ENST00000318024 F8WDY8 70 aa11.04□□□□□ -0.64
USH1C-202ENST00000318024 SND1-IT1Q9HBX3 110 aa11.04□□□□□ -0.64
USH1C-202ENST00000318024 CRYGAP11844 174 aa11.04□□□□□ -0.64
USH1C-202ENST00000318024 COX7B2Q8TF08 81 aa11.04□□□□□ -0.64
USH1C-202ENST00000318024 NBEAL1Q6ZS30 2694 aa11.03□□□□□ -0.64
USH1C-202ENST00000318024 TMEM243Q9BU79 118 aa11.03□□□□□ -0.64
USH1C-202ENST00000318024 CCL18P55774 89 aa11.02□□□□□ -0.65
USH1C-202ENST00000318024 KLK5Q9Y337 293 aaPredicted RBP11.02□□□□□ -0.65
USH1C-202ENST00000318024 IGHV4-28A0A0C4DH34 117 aa11.01□□□□□ -0.65
USH1C-202ENST00000318024 OR13C6PQ8NH95 151 aa11.01□□□□□ -0.65
USH1C-202ENST00000318024 H0YGX0 51 aa11.01□□□□□ -0.65
USH1C-202ENST00000318024 MGAM2Q2M2H8 2515 aa11.01□□□□□ -0.65
USH1C-202ENST00000318024 IGHV3OR16-9A0A0B4J2B5 98 aa11□□□□□ -0.65
USH1C-202ENST00000318024 ATOX1O00244 68 aa11□□□□□ -0.65
USH1C-202ENST00000318024 RETNQ9HD89 108 aa11□□□□□ -0.65
USH1C-202ENST00000318024 Q6JHZ5 121 aa11□□□□□ -0.65
USH1C-202ENST00000318024 LINC00846Q9NV44 126 aa11□□□□□ -0.65
USH1C-202ENST00000318024 TRGV4A0A0C4DH28 118 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 LOC100131303A0A0U1RQF7 123 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 A0A1B0GX51 115 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 MRAPQ8TCY5 172 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 C14orf132Q9NPU4 83 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 J3KT08 172 aa10.99□□□□□ -0.65
USH1C-202ENST00000318024 IBA57-AS1B1ANH7 110 aa10.98□□□□□ -0.65
USH1C-202ENST00000318024 RPL18AQ02543 176 aaKnown RBP10.98□□□□□ -0.65
USH1C-202ENST00000318024 SS18Q15532 418 aa10.98□□□□□ -0.65
USH1C-202ENST00000318024 Q8NAQ8 132 aa10.98□□□□□ -0.65
USH1C-202ENST00000318024 UBE2L6O14933 153 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 DNAL4O96015 105 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 FHL2Q14192 279 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 CYSTM1Q9H1C7 97 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 IGLV4-60A0A075B6I1 120 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 CELA1Q9UNI1 258 aa10.97□□□□□ -0.65
USH1C-202ENST00000318024 LINC00158P58513 81 aa10.96□□□□□ -0.65
USH1C-202ENST00000318024 A0A087WZ39 114 aa10.96□□□□□ -0.66
USH1C-202ENST00000318024 UPK3BQ9BT76 320 aa10.96□□□□□ -0.66
USH1C-202ENST00000318024 TOMM7Q9P0U1 55 aa10.96□□□□□ -0.66
USH1C-202ENST00000318024 LOC107984640A0A0U1RRK4 108 aa10.95□□□□□ -0.66
USH1C-202ENST00000318024 LECT2O14960 151 aa10.95□□□□□ -0.66
USH1C-202ENST00000318024 MIFP14174 115 aa10.95□□□□□ -0.66
USH1C-202ENST00000318024 FAM19A5Q7Z5A7 132 aaPredicted RBP10.95□□□□□ -0.66
USH1C-202ENST00000318024 TRBV6-4A0A1B0GX49 114 aa10.94□□□□□ -0.66
USH1C-202ENST00000318024 LINC01561Q8N1V8 128 aa10.94□□□□□ -0.66
USH1C-202ENST00000318024 LINC00612Q8N6U2 182 aa10.94□□□□□ -0.66
USH1C-202ENST00000318024 IGKV3D-7A0A0C4DH55 119 aa10.94□□□□□ -0.66
USH1C-202ENST00000318024 RPS28P62857 69 aaKnown RBP10.94□□□□□ -0.66
USH1C-202ENST00000318024 hADV29S1A0JD25 119 aa10.93□□□□□ -0.66
USH1C-202ENST00000318024 LINC00167Q96N53 147 aa10.93□□□□□ -0.66
USH1C-202ENST00000318024 LYRM9A8MSI8 78 aa10.93□□□□□ -0.66
USH1C-202ENST00000318024 NCR3O14931 201 aa10.92□□□□□ -0.66
USH1C-202ENST00000318024 DAD1P61803 113 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms