RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 IGLV4-60A0A075B6I1 120 aa3.33□□□□□ -1.88
PTPN13-201ENST00000316707 Q6ZQT0 140 aa3.33□□□□□ -1.88
PTPN13-201ENST00000316707 Q6ZVQ6 151 aa3.33□□□□□ -1.88
PTPN13-201ENST00000316707 CYSTM1Q9H1C7 97 aa3.32□□□□□ -1.88
PTPN13-201ENST00000316707 DSPP15924 2871 aaKnown RBP3.32□□□□□ -1.88
PTPN13-201ENST00000316707 PRO0255Q9UI72 69 aa3.32□□□□□ -1.88
PTPN13-201ENST00000316707 HILS1P60008 231 aa3.32□□□□□ -1.88
PTPN13-201ENST00000316707 A0A1B0GW54 56 aa3.32□□□□□ -1.88
PTPN13-201ENST00000316707 C4orf26Q17RF5 130 aa3.32□□□□□ -1.88
PTPN13-201ENST00000316707 NANOS2P60321 138 aaKnown RBP3.31□□□□□ -1.88
PTPN13-201ENST00000316707 TRBV7-6A0A0J9YX20 115 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 OXTP01178 125 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 A0A0J9YWU9 116 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 IGHV4-30-4P0DP06 118 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 MIFP14174 115 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 Q6ZQY7 126 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 Q8N3U1 123 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 KIAA0087Q14695 138 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 LINC00612Q8N6U2 182 aa3.31□□□□□ -1.88
PTPN13-201ENST00000316707 A0A096LNT2 108 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 DIRC1Q969H9 104 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 FAM208BQ5VWN6 2430 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 PSCAO43653 123 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 TMEM254Q8TBM7 123 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 TLN2Q9Y4G6 2542 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 PLAC8L1A1L4L8 177 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 GYPEP15421 78 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 COX7BP24311 80 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 WFDC9Q8NEX5 89 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 LRRK2Q5S007 2527 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 TRBV7-4A0A0J9YYF1 115 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 CHCHD10Q8WYQ3 142 aaPredicted RBP3.3□□□□□ -1.88
PTPN13-201ENST00000316707 DEFB130BP0DP73 79 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 DEFB130AP0DP74 79 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 CASC2Q6XLA1 102 aa3.3□□□□□ -1.88
PTPN13-201ENST00000316707 PIEZO1Q92508 2521 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 LOC100131303A0A0U1RQF7 123 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 IGHV4-31P0DP07 118 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 SPAG11BQ08648 103 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 SPTSSBQ8NFR3 76 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 HIVEP2P31629 2446 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 MYO18BQ8IUG5 2567 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 V9GYY9 64 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 NACAE9PAV3 2078 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 GVQW2A0A096LPI5 108 aaPredicted RBP3.29□□□□□ -1.88
PTPN13-201ENST00000316707 LYRM9A8MSI8 78 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 IGLV1-51P01701 117 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 ZNF73O43830 326 aaPredicted RBP3.29□□□□□ -1.88
PTPN13-201ENST00000316707 IGLV6-57P01721 117 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 NREPQ16612 68 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 REG3AQ06141 175 aa3.29□□□□□ -1.88
PTPN13-201ENST00000316707 GIG44P09565 113 aaPredicted RBP3.28□□□□□ -1.88
PTPN13-201ENST00000316707 C18orf65Q6ZTR6 163 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 LINC00336Q6ZUF6 198 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 RMI2Q96E14 147 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 JMJD1CQ15652 2540 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 LAMA1P25391 3075 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 SPATA3Q8NHX4 192 aa3.28□□□□□ -1.88
PTPN13-201ENST00000316707 CHD8Q9HCK8 2581 aa3.28□□□□□ -1.89
PTPN13-201ENST00000316707 ANGP03950 147 aaKnown RBP3.28□□□□□ -1.89
PTPN13-201ENST00000316707 CFAP54Q96N23 3096 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 BPY2O14599 106 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 CSNK1G2-AS1Q8NCQ2 148 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 REV3LO60673 3130 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 RPL35AP18077 110 aaKnown RBP3.27□□□□□ -1.89
PTPN13-201ENST00000316707 LINC00269Q8N2A0 174 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 NKAPP1Q8N9T2 125 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 ESRGQ1W209 222 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 C4orf48Q5BLP8 95 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 TRAV10A0A0B4J240 114 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 F8WDY8 70 aa3.27□□□□□ -1.89
PTPN13-201ENST00000316707 SPEGQ15772 3267 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 PRR3P79522 188 aaKnown RBP3.26□□□□□ -1.89
PTPN13-201ENST00000316707 SNURFQ9Y675 71 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 SETD2Q9BYW2 2564 aaPredicted RBP3.26□□□□□ -1.89
PTPN13-201ENST00000316707 A6NED7 52 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 FUSP35637 526 aaKnown RBP eCLIP3.26□□□□□ -1.89
PTPN13-201ENST00000316707 C19orf73Q9NVV2 129 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 LINC01006Q8NI28 216 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 CCDC168Q8NDH2 2452 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 M0R378 163 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 EGFEM1PQ0D2K5 195 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 CYSRT1A8MQ03 144 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 ELOF1P60002 83 aaKnown RBP3.26□□□□□ -1.89
PTPN13-201ENST00000316707 ABCA2Q9BZC7 2435 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 ZFYVE26Q68DK2 2539 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 EPG5Q9HCE0 2579 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 VPS13AQ96RL7 3174 aa3.26□□□□□ -1.89
PTPN13-201ENST00000316707 UNQ6190/PRO20217Q6UXQ8 127 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 FP248Q71RG6 208 aaPredicted RBP3.25□□□□□ -1.89
PTPN13-201ENST00000316707 PRYO14603 147 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 HIGD2BQ4VC39 106 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 A0A0U1RQV1 116 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 PKIGQ9Y2B9 76 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 FRYQ5TBA9 3013 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 MP68P56378 58 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 UBE2BP63146 152 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 LELP1Q5T871 98 aa3.25□□□□□ -1.89
PTPN13-201ENST00000316707 TM2D3Q9BRN9 247 aa3.24□□□□□ -1.89
PTPN13-201ENST00000316707 PKD1L2Q7Z442 2459 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms