RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 COMMD7Q86VX2 200 aa11.9□□□□□ -0.5
LIME1-201ENST00000309546 Q8IZM0 81 aa11.9□□□□□ -0.5
LIME1-201ENST00000309546 CDKN2A-AS1Q9UH64 79 aa11.9□□□□□ -0.5
LIME1-201ENST00000309546 S100PP25815 95 aa11.89□□□□□ -0.51
LIME1-201ENST00000309546 DIRC1Q969H9 104 aa11.89□□□□□ -0.51
LIME1-201ENST00000309546 LINC00469Q8N7U9 141 aa11.88□□□□□ -0.51
LIME1-201ENST00000309546 SCGB3A1Q96QR1 104 aa11.88□□□□□ -0.51
LIME1-201ENST00000309546 LRP2P98164 4655 aa11.87□□□□□ -0.51
LIME1-201ENST00000309546 ERASQ7Z444 233 aa11.86□□□□□ -0.51
LIME1-201ENST00000309546 SEC11CQ9BY50 192 aa11.86□□□□□ -0.51
LIME1-201ENST00000309546 H0Y9J4 135 aa11.85□□□□□ -0.51
LIME1-201ENST00000309546 GNB1LQ9BYB4 327 aa11.85□□□□□ -0.51
LIME1-201ENST00000309546 XAGE1AQ9HD64 81 aa11.85□□□□□ -0.51
LIME1-201ENST00000309546 F8VRH5 84 aa11.83□□□□□ -0.52
LIME1-201ENST00000309546 PRR26Q8N8Z3 221 aa11.83□□□□□ -0.52
LIME1-201ENST00000309546 CXCL5P42830 114 aa11.82□□□□□ -0.52
LIME1-201ENST00000309546 SMIM1B2RUZ4 78 aa11.81□□□□□ -0.52
LIME1-201ENST00000309546 FA2HQ7L5A8 372 aa11.81□□□□□ -0.52
LIME1-201ENST00000309546 MRPL18Q9H0U6 180 aaKnown RBP11.81□□□□□ -0.52
LIME1-201ENST00000309546 SMCO4Q9NRQ5 59 aa11.81□□□□□ -0.52
LIME1-201ENST00000309546 TINCRA0A1B0GVN0 87 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 LINC01549A6NIU2 74 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 FABP9Q0Z7S8 132 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 COX19Q49B96 90 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 COX7B2Q8TF08 81 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 C22orf24Q9Y442 160 aa11.8□□□□□ -0.52
LIME1-201ENST00000309546 LINC01546A6NGU7 62 aa11.79□□□□□ -0.52
LIME1-201ENST00000309546 RPS10P5Q9NQ39 176 aa11.79□□□□□ -0.52
LIME1-201ENST00000309546 SPINK8P0C7L1 97 aa11.78□□□□□ -0.52
LIME1-201ENST00000309546 PDZD11Q5EBL8 140 aa11.78□□□□□ -0.52
LIME1-201ENST00000309546 CST9LQ9H4G1 147 aa11.78□□□□□ -0.52
LIME1-201ENST00000309546 IGLV5-45A0A087WSX0 123 aa11.77□□□□□ -0.53
LIME1-201ENST00000309546 PMVKQ15126 192 aa11.77□□□□□ -0.53
LIME1-201ENST00000309546 LBHQ53QV2 105 aaPredicted RBP11.77□□□□□ -0.53
LIME1-201ENST00000309546 RHEBQ15382 184 aa11.76□□□□□ -0.53
LIME1-201ENST00000309546 C10orf91Q5T1B1 145 aa11.76□□□□□ -0.53
LIME1-201ENST00000309546 KRTAP1-4P0C5Y4 121 aa11.75□□□□□ -0.53
LIME1-201ENST00000309546 NDUFA5Q16718 116 aa11.75□□□□□ -0.53
LIME1-201ENST00000309546 IGLV1-50A0A075B6I6 118 aa11.74□□□□□ -0.53
LIME1-201ENST00000309546 NUPR1O60356 82 aa11.74□□□□□ -0.53
LIME1-201ENST00000309546 MRPL55Q7Z7F7 128 aaKnown RBP11.74□□□□□ -0.53
LIME1-201ENST00000309546 RAB5BP61020 215 aa11.73□□□□□ -0.53
LIME1-201ENST00000309546 CARHSP1Q9Y2V2 147 aaKnown RBP11.73□□□□□ -0.53
LIME1-201ENST00000309546 H3BRM9 83 aa11.72□□□□□ -0.53
LIME1-201ENST00000309546 ZNF861PO60384 105 aa11.72□□□□□ -0.53
LIME1-201ENST00000309546 NDUFA6P56556 154 aa11.72□□□□□ -0.53
LIME1-201ENST00000309546 TP73-AS1Q9UF72 201 aa11.72□□□□□ -0.53
LIME1-201ENST00000309546 SLC7A5P1Q8MH63 180 aa11.71□□□□□ -0.53
LIME1-201ENST00000309546 TRAPPC1Q9Y5R8 145 aa11.71□□□□□ -0.53
LIME1-201ENST00000309546 RNF213Q63HN8 5207 aa11.69□□□□□ -0.54
LIME1-201ENST00000309546 GAGE10A6NGK3 116 aa11.69□□□□□ -0.54
LIME1-201ENST00000309546 RPL37AP8A6NKH3 93 aa11.69□□□□□ -0.54
LIME1-201ENST00000309546 ATP5LO75964 103 aa11.69□□□□□ -0.54
LIME1-201ENST00000309546 A0A096LNJ9 63 aa11.68□□□□□ -0.54
LIME1-201ENST00000309546 RPL13AP40429 203 aaKnown RBP11.68□□□□□ -0.54
LIME1-201ENST00000309546 PMCHL1Q16048 86 aa11.68□□□□□ -0.54
LIME1-201ENST00000309546 C18orf32Q8TCD1 76 aa11.68□□□□□ -0.54
LIME1-201ENST00000309546 LINC00167Q96N53 147 aa11.68□□□□□ -0.54
LIME1-201ENST00000309546 BCE1O60756 84 aa11.67□□□□□ -0.54
LIME1-201ENST00000309546 IGLC3P0DOY3 106 aa11.67□□□□□ -0.54
LIME1-201ENST00000309546 URB1-AS1Q96HZ7 61 aa11.67□□□□□ -0.54
LIME1-201ENST00000309546 HBDP02042 147 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 APOC3P02656 99 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 LINC00614P0C842 121 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 PFN2P35080 140 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 RPL28P46779 137 aaKnown RBP11.66□□□□□ -0.54
LIME1-201ENST00000309546 SVBPQ8N300 66 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 NKAPP1Q8N9T2 125 aa11.66□□□□□ -0.54
LIME1-201ENST00000309546 ZNF22P17026 224 aaPredicted RBP11.65□□□□□ -0.54
LIME1-201ENST00000309546 SNAPINO95295 136 aa11.64□□□□□ -0.55
LIME1-201ENST00000309546 LPAP08519 4548 aa11.63□□□□□ -0.55
LIME1-201ENST00000309546 IGLV5-39A0A0G2JS06 123 aa11.63□□□□□ -0.55
LIME1-201ENST00000309546 IGLV5-37A0A075B6J1 123 aa11.62□□□□□ -0.55
LIME1-201ENST00000309546 SCO1O75880 301 aa11.61□□□□□ -0.55
LIME1-201ENST00000309546 C11orf86A6NJI1 115 aa11.6□□□□□ -0.55
LIME1-201ENST00000309546 UBE2AP49459 152 aa11.6□□□□□ -0.55
LIME1-201ENST00000309546 BAGE3Q86Y29 109 aa11.6□□□□□ -0.55
LIME1-201ENST00000309546 ZNF625Q96I27 306 aaPredicted RBP11.6□□□□□ -0.55
LIME1-201ENST00000309546 ERG28Q9UKR5 140 aa11.6□□□□□ -0.55
LIME1-201ENST00000309546 IGKV2-28A0A075B6P5 120 aa11.59□□□□□ -0.55
LIME1-201ENST00000309546 IGKV2D-28P01615 120 aa11.59□□□□□ -0.55
LIME1-201ENST00000309546 TMEM170BQ5T4T1 132 aa11.59□□□□□ -0.55
LIME1-201ENST00000309546 PRR4Q16378 134 aa11.58□□□□□ -0.56
LIME1-201ENST00000309546 SND1-IT1Q9HBX3 110 aa11.57□□□□□ -0.56
LIME1-201ENST00000309546 A0A087X002 238 aa11.56□□□□□ -0.56
LIME1-201ENST00000309546 CHTOPQ9Y3Y2 248 aaKnown RBP11.56□□□□□ -0.56
LIME1-201ENST00000309546 TSPAN13O95857 204 aa11.55□□□□□ -0.56
LIME1-201ENST00000309546 CRYGAP11844 174 aa11.55□□□□□ -0.56
LIME1-201ENST00000309546 VPREB1P12018 145 aa11.54□□□□□ -0.56
LIME1-201ENST00000309546 COX17Q14061 63 aa11.54□□□□□ -0.56
LIME1-201ENST00000309546 TYMSOSQ8TAI1 123 aa11.54□□□□□ -0.56
LIME1-201ENST00000309546 ANAPC11Q9NYG5 84 aa11.54□□□□□ -0.56
LIME1-201ENST00000309546 RPL24P83731 157 aaKnown RBP11.53□□□□□ -0.56
LIME1-201ENST00000309546 KRTAP13-1Q8IUC0 172 aa11.53□□□□□ -0.56
LIME1-201ENST00000309546 PRLHP81277 87 aa11.52□□□□□ -0.57
LIME1-201ENST00000309546 SFTA2Q6UW10 78 aa11.52□□□□□ -0.57
LIME1-201ENST00000309546 FAM19A1Q7Z5A9 133 aa11.51□□□□□ -0.57
LIME1-201ENST00000309546 TMEM238C9JI98 176 aa11.5□□□□□ -0.57
LIME1-201ENST00000309546 CHCHD1Q96BP2 118 aaKnown RBP11.5□□□□□ -0.57
LIME1-201ENST00000309546 TMEM126AQ9H061 195 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms