RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PMAIP1Q13794 54 aa9.13□□□□□ -0.95
COL3A1-201ENST00000304636 ADAMTS20P59510 1910 aa9.12□□□□□ -0.95
COL3A1-201ENST00000304636 IGLV1-51P01701 117 aa9.12□□□□□ -0.95
COL3A1-201ENST00000304636 LINC01547P58512 204 aaPredicted RBP9.12□□□□□ -0.95
COL3A1-201ENST00000304636 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.12□□□□□ -0.95
COL3A1-201ENST00000304636 TMEM254Q8TBM7 123 aa9.12□□□□□ -0.95
COL3A1-201ENST00000304636 ZNF706Q9Y5V0 76 aaPredicted RBP9.11□□□□□ -0.95
COL3A1-201ENST00000304636 CXCL6P80162 114 aa9.11□□□□□ -0.95
COL3A1-201ENST00000304636 IL17DQ8TAD2 202 aa9.11□□□□□ -0.95
COL3A1-201ENST00000304636 LINC00208Q96KT6 92 aa9.1□□□□□ -0.95
COL3A1-201ENST00000304636 CUL9Q8IWT3 2517 aa9.1□□□□□ -0.95
COL3A1-201ENST00000304636 INAFM1C9JVW0 142 aa9.09□□□□□ -0.95
COL3A1-201ENST00000304636 A0A1W2PPR1 153 aa9.09□□□□□ -0.95
COL3A1-201ENST00000304636 SHISA2Q6UWI4 295 aa9.09□□□□□ -0.95
COL3A1-201ENST00000304636 Q8N2B8 174 aa9.08□□□□□ -0.96
COL3A1-201ENST00000304636 RPS28P62857 69 aaKnown RBP9.08□□□□□ -0.96
COL3A1-201ENST00000304636 AGRNO00468 2067 aa9.08□□□□□ -0.96
COL3A1-201ENST00000304636 IGLV5-45A0A087WSX0 123 aa9.08□□□□□ -0.96
COL3A1-201ENST00000304636 PTPN13Q12923 2485 aa9.08□□□□□ -0.96
COL3A1-201ENST00000304636 TRBV7-6A0A0J9YX20 115 aa9.07□□□□□ -0.96
COL3A1-201ENST00000304636 C11orf72Q8NBR9 251 aa9.07□□□□□ -0.96
COL3A1-201ENST00000304636 F8WDY8 70 aa9.07□□□□□ -0.96
COL3A1-201ENST00000304636 NANOS2P60321 138 aaKnown RBP9.07□□□□□ -0.96
COL3A1-201ENST00000304636 C10orf25Q5T742 122 aa9.07□□□□□ -0.96
COL3A1-201ENST00000304636 BCE1O60756 84 aa9.07□□□□□ -0.96
COL3A1-201ENST00000304636 C6orf223Q8N319 242 aa9.06□□□□□ -0.96
COL3A1-201ENST00000304636 PRRC2AP48634 2157 aaKnown RBP9.06□□□□□ -0.96
COL3A1-201ENST00000304636 PLAC8L1A1L4L8 177 aa9.05□□□□□ -0.96
COL3A1-201ENST00000304636 REG3GQ6UW15 175 aa9.05□□□□□ -0.96
COL3A1-201ENST00000304636 RETNQ9HD89 108 aa9.04□□□□□ -0.96
COL3A1-201ENST00000304636 IGHV3OR16-9A0A0B4J2B5 98 aa9.04□□□□□ -0.96
COL3A1-201ENST00000304636 C2orf48Q96LS8 159 aa9.04□□□□□ -0.96
COL3A1-201ENST00000304636 PRO0628Q9UI54 55 aa9.04□□□□□ -0.96
COL3A1-201ENST00000304636 LINC00474Q9P2X8 69 aa9.04□□□□□ -0.96
COL3A1-201ENST00000304636 A8MTW9 85 aa9.03□□□□□ -0.96
COL3A1-201ENST00000304636 NAV2Q8IVL1 2488 aa9.03□□□□□ -0.96
COL3A1-201ENST00000304636 LY6G6DO95868 133 aa9.03□□□□□ -0.96
COL3A1-201ENST00000304636 FAM218AQ96MZ4 157 aa9.03□□□□□ -0.96
COL3A1-201ENST00000304636 ESRGQ1W209 222 aa9.03□□□□□ -0.96
COL3A1-201ENST00000304636 IGLV9-49A0A0B4J1Y8 123 aa9.02□□□□□ -0.97
COL3A1-201ENST00000304636 PSPHP1O15172 72 aa9.02□□□□□ -0.97
COL3A1-201ENST00000304636 CACNA1AO00555 2505 aa9.01□□□□□ -0.97
COL3A1-201ENST00000304636 EP400Q96L91 3159 aa9.01□□□□□ -0.97
COL3A1-201ENST00000304636 C16orf95Q9H693 158 aa9□□□□□ -0.97
COL3A1-201ENST00000304636 SONP18583 2426 aaKnown RBP9□□□□□ -0.97
COL3A1-201ENST00000304636 HCG22E2RYF7 251 aa8.99□□□□□ -0.97
COL3A1-201ENST00000304636 SPATA3Q8NHX4 192 aa8.99□□□□□ -0.97
COL3A1-201ENST00000304636 PIEZO2Q9H5I5 2752 aa8.99□□□□□ -0.97
COL3A1-201ENST00000304636 NOTCH2Q04721 2471 aa8.99□□□□□ -0.97
COL3A1-201ENST00000304636 C7orf33Q8WU49 177 aa8.99□□□□□ -0.97
COL3A1-201ENST00000304636 hDV103S1A0JD37 113 aa8.98□□□□□ -0.97
COL3A1-201ENST00000304636 H0Y9P7 68 aa8.98□□□□□ -0.97
COL3A1-201ENST00000304636 WDR87Q6ZQQ6 2873 aa8.98□□□□□ -0.97
COL3A1-201ENST00000304636 LYPD5Q6UWN5 251 aa8.97□□□□□ -0.97
COL3A1-201ENST00000304636 A0A087WSZ3 146 aa8.97□□□□□ -0.97
COL3A1-201ENST00000304636 LITAFQ99732 161 aa8.97□□□□□ -0.97
COL3A1-201ENST00000304636 Q9BRP9 147 aa8.96□□□□□ -0.97
COL3A1-201ENST00000304636 Q6ZRU5 148 aa8.96□□□□□ -0.98
COL3A1-201ENST00000304636 HIVEP3Q5T1R4 2406 aa8.96□□□□□ -0.98
COL3A1-201ENST00000304636 PLA2G2AP14555 144 aa8.95□□□□□ -0.98
COL3A1-201ENST00000304636 C4orf26Q17RF5 130 aa8.95□□□□□ -0.98
COL3A1-201ENST00000304636 KLK9Q2XQG4 91 aa8.94□□□□□ -0.98
COL3A1-201ENST00000304636 LOC110117498A0A087WWA1 95 aa8.94□□□□□ -0.98
COL3A1-201ENST00000304636 Q6ZTC4 211 aa8.94□□□□□ -0.98
COL3A1-201ENST00000304636 PCOTHQ58A44 107 aa8.94□□□□□ -0.98
COL3A1-201ENST00000304636 Q6ZQT0 140 aa8.94□□□□□ -0.98
COL3A1-201ENST00000304636 KRTAP10-9P60411 292 aa8.93□□□□□ -0.98
COL3A1-201ENST00000304636 SMIM29Q86T20 159 aa8.93□□□□□ -0.98
COL3A1-201ENST00000304636 MYO9AB2RTY4 2548 aa8.93□□□□□ -0.98
COL3A1-201ENST00000304636 OXLD1Q5BKU9 147 aa8.93□□□□□ -0.98
COL3A1-201ENST00000304636 Q9UF83 564 aa8.92□□□□□ -0.98
COL3A1-201ENST00000304636 IGHV6-1A0A0B4J1U7 121 aa8.92□□□□□ -0.98
COL3A1-201ENST00000304636 A0A1B0GW54 56 aa8.92□□□□□ -0.98
COL3A1-201ENST00000304636 DOPEY1Q5JWR5 2465 aa8.91□□□□□ -0.98
COL3A1-201ENST00000304636 DEFB116Q30KQ4 102 aa8.91□□□□□ -0.98
COL3A1-201ENST00000304636 LIMD2Q9BT23 127 aa8.91□□□□□ -0.98
COL3A1-201ENST00000304636 KIAA0087Q14695 138 aa8.91□□□□□ -0.98
COL3A1-201ENST00000304636 TLN1Q9Y490 2541 aaKnown RBP8.91□□□□□ -0.98
COL3A1-201ENST00000304636 PTPRBP23467 1997 aa8.9□□□□□ -0.98
COL3A1-201ENST00000304636 M0R2N4 97 aa8.9□□□□□ -0.99
COL3A1-201ENST00000304636 FHL3Q13643 280 aa8.9□□□□□ -0.99
COL3A1-201ENST00000304636 SMCR5Q8TEV8 140 aa8.9□□□□□ -0.99
COL3A1-201ENST00000304636 ELOF1P60002 83 aaKnown RBP8.89□□□□□ -0.99
COL3A1-201ENST00000304636 IGF2RP11717 2491 aa8.89□□□□□ -0.99
COL3A1-201ENST00000304636 CCDC168Q8NDH2 2452 aa8.89□□□□□ -0.99
COL3A1-201ENST00000304636 SPINK1P00995 79 aa8.88□□□□□ -0.99
COL3A1-201ENST00000304636 C1orf64Q8NEQ6 169 aa8.88□□□□□ -0.99
COL3A1-201ENST00000304636 RETNLBQ9BQ08 111 aa8.88□□□□□ -0.99
COL3A1-201ENST00000304636 X6R8D5 127 aa8.88□□□□□ -0.99
COL3A1-201ENST00000304636 MYO18BQ8IUG5 2567 aa8.87□□□□□ -0.99
COL3A1-201ENST00000304636 C6orf48Q9UBA6 75 aa8.87□□□□□ -0.99
COL3A1-201ENST00000304636 COL4A2P08572 1712 aa8.87□□□□□ -0.99
COL3A1-201ENST00000304636 C22orf24Q9Y442 160 aa8.87□□□□□ -0.99
COL3A1-201ENST00000304636 NHLRC4P0CG21 123 aaPredicted RBP8.84□□□□□ -0.99
COL3A1-201ENST00000304636 SMR3AQ99954 134 aa8.84□□□□□ -0.99
COL3A1-201ENST00000304636 PRLHP81277 87 aa8.83□□□□□ -1
COL3A1-201ENST00000304636 TM2D3Q9BRN9 247 aa8.83□□□□□ -1
COL3A1-201ENST00000304636 CIRBP-AS1Q8TBR5 109 aa8.83□□□□□ -1
COL3A1-201ENST00000304636 ABCA2Q9BZC7 2435 aa8.81□□□□□ -1
COL3A1-201ENST00000304636 COL27A1Q8IZC6 1860 aaPredicted RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms