RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PAPPA-AS1Q5QFB9 102 aa7.66□□□□□ -1.18
CD44-203ENST00000278386 COMMD7Q86VX2 200 aa7.66□□□□□ -1.18
CD44-203ENST00000278386 CTDSP1Q9GZU7 261 aa7.66□□□□□ -1.18
CD44-203ENST00000278386 GEMIN7Q9H840 131 aaKnown RBP7.66□□□□□ -1.18
CD44-203ENST00000278386 XAGE1AQ9HD64 81 aa7.66□□□□□ -1.18
CD44-203ENST00000278386 NXT2Q9NPJ8 142 aaKnown RBP7.66□□□□□ -1.18
CD44-203ENST00000278386 IGIPA6NJ69 53 aa7.65□□□□□ -1.18
CD44-203ENST00000278386 NUPR1O60356 82 aa7.65□□□□□ -1.18
CD44-203ENST00000278386 PRR4Q16378 134 aa7.65□□□□□ -1.18
CD44-203ENST00000278386 FAM19A3Q7Z5A8 133 aa7.65□□□□□ -1.18
CD44-203ENST00000278386 C22orf24Q9Y442 160 aa7.65□□□□□ -1.18
CD44-203ENST00000278386 F8VRH5 84 aa7.64□□□□□ -1.19
CD44-203ENST00000278386 ZNF861PO60384 105 aa7.64□□□□□ -1.19
CD44-203ENST00000278386 LBHQ53QV2 105 aaPredicted RBP7.64□□□□□ -1.19
CD44-203ENST00000278386 SEC11CQ9BY50 192 aa7.64□□□□□ -1.19
CD44-203ENST00000278386 CDKN2A-AS1Q9UH64 79 aa7.64□□□□□ -1.19
CD44-203ENST00000278386 G0S2P27469 103 aa7.63□□□□□ -1.19
CD44-203ENST00000278386 CXCL5P42830 114 aa7.63□□□□□ -1.19
CD44-203ENST00000278386 TIMM17AQ99595 171 aa7.63□□□□□ -1.19
CD44-203ENST00000278386 C10orf91Q5T1B1 145 aa7.62□□□□□ -1.19
CD44-203ENST00000278386 MRPL55Q7Z7F7 128 aaKnown RBP7.62□□□□□ -1.19
CD44-203ENST00000278386 TOMM6Q96B49 74 aa7.62□□□□□ -1.19
CD44-203ENST00000278386 CARHSP1Q9Y2V2 147 aaKnown RBP7.62□□□□□ -1.19
CD44-203ENST00000278386 KIAA1644Q3SXP7 199 aa7.61□□□□□ -1.19
CD44-203ENST00000278386 SMIM1B2RUZ4 78 aa7.6□□□□□ -1.19
CD44-203ENST00000278386 SCGB3A1Q96QR1 104 aa7.6□□□□□ -1.19
CD44-203ENST00000278386 TP73-AS1Q9UF72 201 aa7.6□□□□□ -1.19
CD44-203ENST00000278386 RPL28P46779 137 aaKnown RBP7.59□□□□□ -1.19
CD44-203ENST00000278386 ERASQ7Z444 233 aa7.59□□□□□ -1.19
CD44-203ENST00000278386 COX7B2Q8TF08 81 aa7.59□□□□□ -1.19
CD44-203ENST00000278386 GAGE10A6NGK3 116 aa7.58□□□□□ -1.2
CD44-203ENST00000278386 RPL37AP8A6NKH3 93 aa7.58□□□□□ -1.2
CD44-203ENST00000278386 BCE1O60756 84 aa7.58□□□□□ -1.2
CD44-203ENST00000278386 TSPAN13O95857 204 aa7.58□□□□□ -1.2
CD44-203ENST00000278386 TRAV9-1A0A075B6T8 112 aa7.57□□□□□ -1.2
CD44-203ENST00000278386 TINCRA0A1B0GVN0 87 aa7.57□□□□□ -1.2
CD44-203ENST00000278386 SPINK8P0C7L1 97 aa7.57□□□□□ -1.2
CD44-203ENST00000278386 PDZD11Q5EBL8 140 aa7.57□□□□□ -1.2
CD44-203ENST00000278386 NKAPP1Q8N9T2 125 aa7.57□□□□□ -1.2
CD44-203ENST00000278386 RAB5BP61020 215 aa7.56□□□□□ -1.2
CD44-203ENST00000278386 TYMSOSQ8TAI1 123 aa7.56□□□□□ -1.2
CD44-203ENST00000278386 LINC00167Q96N53 147 aa7.56□□□□□ -1.2
CD44-203ENST00000278386 A0A087X002 238 aa7.55□□□□□ -1.2
CD44-203ENST00000278386 CRYGAP11844 174 aa7.55□□□□□ -1.2
CD44-203ENST00000278386 UBE2AP49459 152 aa7.55□□□□□ -1.2
CD44-203ENST00000278386 RPS10P5Q9NQ39 176 aa7.55□□□□□ -1.2
CD44-203ENST00000278386 SMCO4Q9NRQ5 59 aa7.55□□□□□ -1.2
CD44-203ENST00000278386 IGLV5-45A0A087WSX0 123 aa7.54□□□□□ -1.2
CD44-203ENST00000278386 LINC01549A6NIU2 74 aa7.54□□□□□ -1.2
CD44-203ENST00000278386 S100PP25815 95 aa7.54□□□□□ -1.2
CD44-203ENST00000278386 RHEBQ15382 184 aa7.54□□□□□ -1.2
CD44-203ENST00000278386 GNB1LQ9BYB4 327 aa7.54□□□□□ -1.2
CD44-203ENST00000278386 H3BRM9 83 aa7.53□□□□□ -1.2
CD44-203ENST00000278386 PMVKQ15126 192 aa7.53□□□□□ -1.2
CD44-203ENST00000278386 FA2HQ7L5A8 372 aa7.53□□□□□ -1.2
CD44-203ENST00000278386 CST9LQ9H4G1 147 aa7.53□□□□□ -1.2
CD44-203ENST00000278386 MUC2Q02817 5179 aa7.52□□□□□ -1.21
CD44-203ENST00000278386 IGLV5-37A0A075B6J1 123 aa7.52□□□□□ -1.21
CD44-203ENST00000278386 IGKV2-28A0A075B6P5 120 aa7.52□□□□□ -1.21
CD44-203ENST00000278386 ATP5LO75964 103 aa7.52□□□□□ -1.21
CD44-203ENST00000278386 IGKV2D-28P01615 120 aa7.52□□□□□ -1.21
CD44-203ENST00000278386 MRPL18Q9H0U6 180 aaKnown RBP7.52□□□□□ -1.21
CD44-203ENST00000278386 LINC01546A6NGU7 62 aa7.51□□□□□ -1.21
CD44-203ENST00000278386 SCO1O75880 301 aa7.51□□□□□ -1.21
CD44-203ENST00000278386 APOC3P02656 99 aa7.51□□□□□ -1.21
CD44-203ENST00000278386 PFN2P35080 140 aa7.51□□□□□ -1.21
CD44-203ENST00000278386 ANAPC11Q9NYG5 84 aa7.51□□□□□ -1.21
CD44-203ENST00000278386 A0A0U1RQV1 116 aa7.5□□□□□ -1.21
CD44-203ENST00000278386 NDUFA6P56556 154 aa7.5□□□□□ -1.21
CD44-203ENST00000278386 FABP9Q0Z7S8 132 aa7.49□□□□□ -1.21
CD44-203ENST00000278386 PRLHP81277 87 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 COX19Q49B96 90 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 KRTAP13-2Q52LG2 175 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 KRTAP13-1Q8IUC0 172 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 URB1-AS1Q96HZ7 61 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 YPEL4Q96NS1 127 aa7.48□□□□□ -1.21
CD44-203ENST00000278386 IGLC3P0DOY3 106 aa7.47□□□□□ -1.21
CD44-203ENST00000278386 FAM19A1Q7Z5A9 133 aa7.47□□□□□ -1.21
CD44-203ENST00000278386 LINC00304Q8N9R0 145 aa7.47□□□□□ -1.21
CD44-203ENST00000278386 RETNLBQ9BQ08 111 aa7.47□□□□□ -1.21
CD44-203ENST00000278386 ERG28Q9UKR5 140 aa7.47□□□□□ -1.21
CD44-203ENST00000278386 IGKV2D-26A0A0A0MRZ7 120 aa7.46□□□□□ -1.22
CD44-203ENST00000278386 SNAPINO95295 136 aa7.46□□□□□ -1.22
CD44-203ENST00000278386 ZNF22P17026 224 aaPredicted RBP7.46□□□□□ -1.22
CD44-203ENST00000278386 FAM229BQ4G0N7 80 aa7.46□□□□□ -1.22
CD44-203ENST00000278386 SVBPQ8N300 66 aa7.46□□□□□ -1.22
CD44-203ENST00000278386 A0A096LNJ9 63 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 IGLV5-39A0A0G2JS06 123 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 TMEM238C9JI98 176 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 VPREB1P12018 145 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 C18orf32Q8TCD1 76 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 ZNF625Q96I27 306 aaPredicted RBP7.45□□□□□ -1.22
CD44-203ENST00000278386 TMEM126AQ9H061 195 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 SND1-IT1Q9HBX3 110 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 TRAPPC1Q9Y5R8 145 aa7.45□□□□□ -1.22
CD44-203ENST00000278386 HBDP02042 147 aa7.44□□□□□ -1.22
CD44-203ENST00000278386 RPL24P83731 157 aaKnown RBP7.44□□□□□ -1.22
CD44-203ENST00000278386 NDUFA5Q16718 116 aa7.44□□□□□ -1.22
CD44-203ENST00000278386 COX17Q14061 63 aa7.43□□□□□ -1.22
CD44-203ENST00000278386 PMCHL1Q16048 86 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 233.5 ms